Rh1BG052100

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002187
Physical Location & Seq
Forward (+)
7274560 .. 7277848
3289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG052100.1

Sequence Viewer

Length: 744 bp
ATGTTGGGTCTGAGAGATATCCTCCTGATTGCTCCAAACCATTCTTCTGTGCACCAACAAAACCAACCCATTTCCTCTGACCACCCAACTCTCCCTCTTCCTTCCTCCACAGCTCTTGGGGTTGGCCTCGGTATTTTCCCTCTCCTCACTGCAACCCCATGTGGCCAAAATGCTCCGGCCGCCGAGGGCAATCCGGACAATTCACGTTTCTGGAGCCTGAGAACGTACCCGGAGCTGAATTCTTCCAAGCAAGACATGCTCAGTTTTGGGATTCACGGCGGCGCCGAAAGTCAACAGGTGGTGGAATCCGATGACGGAAATGTGAACGGAGAAGGTGGTGGTCGTGGTGGTGGTGAAGACAGTGGCATGAGGGCTTGCAAGGACTGTGGGAACAGAGCCAAGAAAGGCTGCGAGTATTCAAGGTGCAGGACTTGTTGCAGAGGCAGGGGATATGACTGCTCCACTCACGTGAGGAGCACGTGGGTTCCGGCAGCGAGGCGGCGGGAAAGGCAGATGGGTGTGACCGTTGCTGTTGCTGGTGGTGTTGCTAGTGGCGGCGGCGGTGAAGGTTCTTCCGGTTCTTCTTCCGTTGCCAAAAGACCAAGAGTTATGATGCCATCAAAGAATATGCAAATCTCAGACAGTCATTACCAGATCAAGTTCGGGTGCCAGCTGTTTTTAAGTGCCATAGAGTCACTGCCGTTAGCAATGGTGAAGCCGAGATTGCTTACCAGGCTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

247

Amino Acids

26.17

Weight (kDa)

9.05

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 124 - 209 7.1e-31 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 281, 666
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 7 cut(s) 180, 279, 499, 502, 555, 558, 561
AcoI YGGCCR 2 cut(s) 163, 177
AcsI RAATTY 1 cut(s) 238
AcvI CACGTG 2 cut(s) 469, 480
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 227
AgsI TTSAA 1 cut(s) 420
AjnI CCWGG 1 cut(s) 731
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AleI CACNNNNGTG 1 cut(s) 467
AluBI AGCT 3 cut(s) 113, 235, 673
AluI AGCT 3 cut(s) 113, 235, 673
Alw21I GWGCWC 2 cut(s) 54, 479
Alw44I GTGCAC 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 3 cut(s) 124, 163, 177
ApaLI GTGCAC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 408, 491
ApoI RAATTY 1 cut(s) 238
AspLEI GCGC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 365, 575, 724
BaeGI GKGCMC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 2 cut(s) 281, 666
BbrPI CACGTG 2 cut(s) 469, 480
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 54, 479
BbvI GCAGC 2 cut(s) 395, 503
BccI CCATC 2 cut(s) 508, 625
BceAI ACGGC 2 cut(s) 292, 685
BciT130I CCWGG 1 cut(s) 733
BcnI CCSGG 1 cut(s) 230
BfaI CTAG 1 cut(s) 549
BfoI RGCGCY 1 cut(s) 285
BisI GCNGC 7 cut(s) 180, 280, 409, 492, 500, 556, 559
BlsI GCNGC 7 cut(s) 181, 281, 410, 493, 501, 557, 560
Bme1390I CCNGG 2 cut(s) 230, 733
BmiI GGNNCC 4 cut(s) 215, 283, 486, 668
BmrFI CCNGG 2 cut(s) 230, 733
BmsI GCATC 1 cut(s) 603
BpiI GAAGAC 1 cut(s) 363
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 2 cut(s) 469, 480
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 127, 183
BsaWI WCCGGW 2 cut(s) 193, 575
Bse3DI GCAATG 1 cut(s) 714
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 1 cut(s) 733
BseDI CCNNGG 2 cut(s) 127, 183
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 3 cut(s) 209, 274, 651
BseRI GAGGAG 2 cut(s) 134, 487
BseSI GKGCMC 1 cut(s) 54
BseX3I CGGCCG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 395, 503
BsgI GTGCAG 1 cut(s) 445
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 3 cut(s) 126, 165, 179
BshNI GGYRCC 2 cut(s) 281, 666
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 54, 479
BsiSI CCGG 5 cut(s) 176, 194, 230, 488, 576
BsnI GGCC 3 cut(s) 126, 165, 179
Bsp1286I GDGCHC 2 cut(s) 54, 479
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 1 cut(s) 654
BspACI CCGC 7 cut(s) 180, 279, 499, 502, 555, 558, 561
BspANI GGCC 3 cut(s) 126, 165, 179
BspCNI CTCAG 3 cut(s) 210, 273, 650
BspEI TCCGGA 1 cut(s) 193
BspLI GGNNCC 4 cut(s) 215, 283, 486, 668
BspT107I GGYRCC 2 cut(s) 281, 666
BsrDI GCAATG 1 cut(s) 714
BssECI CCNNGG 2 cut(s) 127, 183
BssMI GATC 1 cut(s) 654
BssNI GRCGYC 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 733
Bst4CI ACNGT 5 cut(s) 362, 386, 526, 644, 741
Bst6I CTCTTC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 256
BstBAI YACGTR 2 cut(s) 469, 480
BstC8I GCNNGC 2 cut(s) 376, 671
BstDEI CTNAG 4 cut(s) 11, 218, 260, 637
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 1 cut(s) 657
BstMBI GATC 1 cut(s) 654
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 5 cut(s) 179, 256, 508, 724, 733
BstNI CCWGG 1 cut(s) 733
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 2 cut(s) 228, 731
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 395, 503
BstV2I GAAGAC 1 cut(s) 363
BstZI CGGCCG 1 cut(s) 177
BsuRI GGCC 3 cut(s) 126, 165, 179
BtsI GCAGTG 2 cut(s) 147, 695
BtsIMutI CAGTG 3 cut(s) 147, 367, 695
Cac8I GCNNGC 2 cut(s) 376, 671
CfoI GCGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 226
CspCI CAANNNNNGTGG 4 cut(s) 97, 132, 367, 402
CviAII CATG 3 cut(s) 159, 256, 367
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 4 cut(s) 11, 218, 260, 637
DinI GGCGCC 1 cut(s) 283
DpnI GATC 1 cut(s) 656
DpnII GATC 1 cut(s) 654
EaeI YGGCCR 2 cut(s) 163, 177
EagI CGGCCG 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EclXI CGGCCG 1 cut(s) 177
Eco32I GATATC 1 cut(s) 19
Eco52I CGGCCG 1 cut(s) 177
Eco72I CACGTG 2 cut(s) 469, 480
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 731
EcoRV GATATC 1 cut(s) 19
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
FaeI CATG 3 cut(s) 162, 259, 370
FaiI YATR 7 cut(s) 160, 257, 368, 453, 611, 629, 689
FatI CATG 3 cut(s) 158, 255, 366
FauI CCCGC 1 cut(s) 495
Fnu4HI GCNGC 7 cut(s) 180, 280, 409, 492, 500, 556, 559
Fsp4HI GCNGC 7 cut(s) 180, 280, 409, 492, 500, 556, 559
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 283
GluI GCNGC 7 cut(s) 180, 280, 409, 492, 500, 556, 559
GsuI CTGGAG 1 cut(s) 232
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 3 cut(s) 126, 165, 179
HapII CCGG 5 cut(s) 176, 194, 230, 488, 576
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 3 cut(s) 162, 259, 370
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 3 cut(s) 271, 305, 692
HpaII CCGG 5 cut(s) 176, 194, 230, 488, 576
HphI GGTGA 3 cut(s) 365, 575, 724
Hpy166II GTNNAC 3 cut(s) 52, 293, 325
Hpy188I TCNGA 4 cut(s) 12, 79, 310, 640
Hpy188III TCNNGA 3 cut(s) 25, 194, 211
Hpy8I GTNNAC 3 cut(s) 52, 293, 325
HpyAV CCTTC 3 cut(s) 111, 326, 560
HpyCH4III ACNGT 5 cut(s) 362, 386, 526, 644, 741
HpyCH4IV ACGT 4 cut(s) 205, 224, 468, 479
HpyCH4V TGCA 6 cut(s) 52, 152, 378, 426, 438, 631
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 256, 508, 724, 733
HpyF3I CTNAG 4 cut(s) 11, 218, 260, 637
HpySE526I ACGT 4 cut(s) 205, 224, 468, 479
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 3 cut(s) 162, 259, 370
HspAI GCGC 1 cut(s) 282
KasI GGCGCC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 193
Kzo9I GATC 1 cut(s) 654
LmnI GCTCC 6 cut(s) 37, 178, 213, 232, 464, 474
Lsp1109I GCAGC 2 cut(s) 395, 503
LweI GCATC 1 cut(s) 603
MaeI CTAG 1 cut(s) 549
MaeII ACGT 4 cut(s) 205, 224, 468, 479
MaeIII GTNAC 2 cut(s) 520, 693
MalI GATC 1 cut(s) 656
MboI GATC 1 cut(s) 654
MboII GAAGA 7 cut(s) 36, 89, 234, 368, 564, 573, 576
MhlI GDGCHC 2 cut(s) 54, 479
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 2 cut(s) 199, 238
MluNI TGGCCA 1 cut(s) 165
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 1 cut(s) 701
Mox20I TGGCCA 1 cut(s) 165
MroI TCCGGA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 165
MseI TTAA 1 cut(s) 680
MslI CAYNNNNRTG 1 cut(s) 467
Msp20I TGGCCA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 673
MspI CCGG 5 cut(s) 176, 194, 230, 488, 576
MspR9I CCNGG 2 cut(s) 230, 733
MvaI CCWGG 1 cut(s) 733
MwoI GCNNNNNNNGC 5 cut(s) 179, 256, 508, 724, 733
NarI GGCGCC 1 cut(s) 282
NciI CCSGG 1 cut(s) 230
NdeII GATC 1 cut(s) 654
NlaIII CATG 3 cut(s) 162, 259, 370
NlaIV GGNNCC 4 cut(s) 215, 283, 486, 668
NmeAIII GCCGAG 2 cut(s) 208, 744
NmuCI GTSAC 2 cut(s) 520, 693
NspI RCATGY 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 2 cut(s) 271, 305
PkrI GCNGC 7 cut(s) 181, 281, 410, 493, 501, 557, 560
PleI GAGTC 1 cut(s) 700
PluTI GGCGCC 1 cut(s) 285
PmaCI CACGTG 2 cut(s) 469, 480
PmlI CACGTG 2 cut(s) 469, 480
PpsI GAGTC 1 cut(s) 700
Ppu21I YACGTR 2 cut(s) 469, 480
Psp6I CCWGG 1 cut(s) 731
PspCI CACGTG 2 cut(s) 469, 480
PspGI CCWGG 1 cut(s) 731
PspN4I GGNNCC 4 cut(s) 215, 283, 486, 668
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 7 cut(s) 180, 280, 409, 492, 500, 556, 559
Sau3AI GATC 1 cut(s) 654
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 2 cut(s) 230, 733
SduI GDGCHC 2 cut(s) 54, 479
SfaNI GCATC 1 cut(s) 603
SfoI GGCGCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 467
Sse9I AATT 2 cut(s) 199, 238
SsiI CCGC 7 cut(s) 180, 279, 499, 502, 555, 558, 561
SspDI GGCGCC 1 cut(s) 281
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 228, 731
TaaI ACNGT 5 cut(s) 362, 386, 526, 644, 741
TaiI ACGT 4 cut(s) 208, 227, 471, 482
TasI AATT 2 cut(s) 199, 238
TauI GCSGC 5 cut(s) 182, 282, 502, 558, 561
TfiI GAWTC 2 cut(s) 271, 305
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TscAI CASTG 3 cut(s) 154, 367, 702
TseFI GTSAC 2 cut(s) 520, 693
TseI GCWGC 2 cut(s) 408, 491
Tsp45I GTSAC 2 cut(s) 520, 693
TspGWI ACGGA 3 cut(s) 330, 342, 577
TspRI CASTG 3 cut(s) 154, 367, 702
VneI GTGCAC 1 cut(s) 50
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 259
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.