Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002187

Physical Location & Seq

Genomic Coordinates Reverse (-)

43698312 .. 43709002

Gene Structure 10691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG264300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGTTATGGTGGCCTTCCTCAGGCTTGGAGTGTTGTGGGTCGAGATCTAGCATGGTTTATGGAGCGCTCTGGTGGTTGGGTTGTGGGGGAATCAACTTGCTTCCCTCCTGTGTCCGCCGGCGTTAGATCTGGAGCTTTATTTGATGTGTGGCGCGTGCGGCGGCCAGGTGATGATGGGGGTGCGATTAGGGTCAAGGTCACTGGAAGCGGCATGTTTGCTCCAAGCGACAGCGGTATTTTTCTGGGTGGTGACCACGGCGGTGGTAGGCATGATGGAGGCGACGATGGGATGCATGGCCTTGTGAGCGTCTCTAGAGTTCCGGCGACGACGGGAGGTAGTTCTGTTGAGGAGATTGACTTGGGATATAAGATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.04

Weight (kDa)

5.84

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54430
fragaria_vesca	FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110
malus_domestica	MD02G1285800.v1.1
prunus_persica	Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319531 RchiOBHm_Chr1g0324311
rosa_laevigata	RLG00000008631 RLG00000017375 RLG00000030203 RLG00000033698
rosa_multiflora	Rmu_sc0004082.1_g000006 Rmu_sc0004082.1_g000019 Rmu_sc0004082.1_g000020
rosa_roxburghii	Rroxscaffold_159G00432690 Rroxscaffold_159G00432760 Rroxscaffold_159G00432820 Rroxscaffold_4G00325640 Rroxscaffold_4G00325700
rosa_rugosa	Rorug01G0045000 Rorug01G0045100 Rorug01G0045200 Rorug01G0045300 Rorug01G0045400 Rorug01G0045500
rosa_samantha	Rh1AG061000 Rh1BG052100 Rh1CG063200 Rh1DG067600 Rh6AG126800 Rh6CG264300 Rh7CG487400
rosa_wichuraiana	Rw1G005190 Rw4G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AciI	CCGC	6 cut(s)	117, 160, 163, 210, 234, 261
AcoI	YGGCCR	1 cut(s)	164
AfeI	AGCGCT	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	166
AleI	CACNNNNGTG	1 cut(s)	261
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	316
Aor51HI	AGCGCT	1 cut(s)	68
AoxI	GGCC	3 cut(s)	13, 164, 298
AspLEI	GCGC	2 cut(s)	69, 156
AsuHPI	GGTGA	2 cut(s)	182, 263
AxyI	CCTNAGG	1 cut(s)	21
BccI	CCATC	3 cut(s)	170, 269, 281
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	2 cut(s)	50, 315
BfoI	RGCGCY	1 cut(s)	70
BglII	AGATCT	2 cut(s)	46, 128
BisI	GCNGC	3 cut(s)	161, 164, 211
BlsI	GCNGC	3 cut(s)	162, 165, 212
Bme1390I	CCNGG	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	208
Bse21I	CCTNAGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	15, 166, 300
BsiSI	CCGG	2 cut(s)	120, 323
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	316
BsmBI	CGTCTC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	15, 166, 300
Bsp143I	GATC	3 cut(s)	46, 128, 372
BspACI	CCGC	6 cut(s)	117, 160, 163, 210, 234, 261
BspANI	GGCC	3 cut(s)	15, 166, 300
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	46, 128, 372
Bst2UI	CCWGG	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	121, 158
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	256
BstEII	GGTNACC	1 cut(s)	251
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 156
BstKTI	GATC	3 cut(s)	49, 131, 375
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	3 cut(s)	46, 128, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 306
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	217
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	46, 128
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	2 cut(s)	46, 128
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	15, 166, 300
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	121, 158
CfoI	GCGC	2 cut(s)	69, 156
Cfr10I	RCCGGY	1 cut(s)	119
CseI	GACGC	1 cut(s)	298
CviAII	CATG	4 cut(s)	54, 214, 272, 296
CviJI	RGCY	5 cut(s)	15, 26, 137, 166, 300
CviKI_1	RGCY	5 cut(s)	15, 26, 137, 166, 300
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	3 cut(s)	48, 130, 374
DpnII	GATC	3 cut(s)	46, 128, 372
EaeI	YGGCCR	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	106
Eco47III	AGCGCT	1 cut(s)	68
Eco81I	CCTNAGG	1 cut(s)	21
Eco91I	GGTNACC	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	4 cut(s)	57, 217, 275, 299
FaiI	YATR	7 cut(s)	9, 55, 62, 215, 273, 297, 369
FatI	CATG	4 cut(s)	53, 213, 271, 295
Fnu4HI	GCNGC	3 cut(s)	161, 164, 211
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	161, 164, 211
FspBI	CTAG	2 cut(s)	50, 315
GlaI	GCGC	2 cut(s)	68, 155
GluI	GCNGC	3 cut(s)	161, 164, 211
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	15, 166, 300
HapII	CCGG	2 cut(s)	120, 323
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	2 cut(s)	69, 156
Hin1II	CATG	4 cut(s)	57, 217, 275, 299
Hin6I	GCGC	2 cut(s)	67, 154
HinP1I	GCGC	2 cut(s)	67, 154
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	2 cut(s)	120, 323
HphI	GGTGA	2 cut(s)	182, 263
Hpy188III	TCNNGA	3 cut(s)	44, 132, 315
Hpy99I	CGWCG	3 cut(s)	287, 331, 334
HpyAV	CCTTC	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 306
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	57, 217, 275, 299
HspAI	GCGC	2 cut(s)	67, 154
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	46, 128, 372
LmnI	GCTCC	3 cut(s)	64, 134, 226
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	2 cut(s)	50, 315
MaeIII	GTNAC	2 cut(s)	199, 251
MalI	GATC	3 cut(s)	48, 130, 374
MboI	GATC	3 cut(s)	46, 128, 372
MflI	RGATCY	2 cut(s)	46, 128
MnlI	CCTC	5 cut(s)	30, 117, 272, 329, 343
Mph1103I	ATGCAT	1 cut(s)	297
MreI	CGCCGGCG	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	2 cut(s)	120, 323
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	160, 306
NaeI	GCCGGC	1 cut(s)	121
NdeII	GATC	3 cut(s)	46, 128, 372
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	4 cut(s)	57, 217, 275, 299
NmuCI	GTSAC	2 cut(s)	199, 251
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	1 cut(s)	217
OliI	CACNNNNGTG	1 cut(s)	261
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	162, 165, 212
Psp6I	CCWGG	1 cut(s)	166
PspEI	GGTNACC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	46, 128
RseI	CAYNNNNRTG	1 cut(s)	261
SatI	GCNGC	3 cut(s)	161, 164, 211
Sau3AI	GATC	3 cut(s)	46, 128, 372
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	4 cut(s)	139, 172, 201, 340
SfaNI	GCATC	1 cut(s)	282
SgrAI	CRCCGGYG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	261
SsiI	CCGC	6 cut(s)	117, 160, 163, 210, 234, 261
SspMI	CTAG	2 cut(s)	50, 315
StyD4I	CCNGG	1 cut(s)	166
TaqI	TCGA	1 cut(s)	43
TauI	GCSGC	3 cut(s)	163, 166, 213
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	199, 251
Tsp45I	GTSAC	2 cut(s)	199, 251
TspRI	CASTG	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	2 cut(s)	50, 315
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.