Rroxscaffold_159G00432820

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0002187
Physical Location & Seq
Forward (+)
460882 .. 461614
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432820.1

Sequence Viewer

Length: 330 bp
ATGGAACTGATGTGTAGTCACGCCGACGTTACAGCCTCTAATGCAAATCTCAGACAGTCATTACCAGATCAATTTCGGGTACCAGCTGTTTTTAAGTGCCATAGAGTCACTGCCATTAGCAATGGTGAAGCTGAGATTGCTTACCAGGCTACTGTGAAAATCAGTGGTCATGTATTCAAGGGGTTGCTCTATGATCGTGGGGTTGATAAGAAGAATGAATACCCTTGTATTTCACATATGCATTTGGGAAGTGGTAGTAACCAAAGGAATGGAGACTCTTCTTCTCCAACTGTGCCTCCATCCAATGTCTGTGTGGCGTCCACCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

109

Amino Acids

11.74

Weight (kDa)

7.73

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 11 - 69 3.1e-21 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 1 cut(s) 81
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 3 cut(s) 86, 131, 327
AluI AGCT 3 cut(s) 86, 131, 327
Alw26I GTCTC 1 cut(s) 267
Asp718I GGTACC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 137
BanI GGYRCC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BccI CCATC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 267
Bme1390I CCNGG 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 317
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 64, 123
BshNI GGYRCC 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 67, 193
BspCNI CTCAG 2 cut(s) 63, 124
BspLI GGNNCC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 127
BssMI GATC 2 cut(s) 67, 193
BssNI GRCGYC 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 3 cut(s) 57, 154, 292
Bst6I CTCTTC 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 50, 132
BstF5I GGATG 1 cut(s) 299
BstKTI GATC 2 cut(s) 70, 196
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 2 cut(s) 67, 193
BstMWI GCNNNNNNNGC 3 cut(s) 41, 137, 146
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 299
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 2 cut(s) 108, 169
CseI GACGC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 80
CviAII CATG 1 cut(s) 170
CviJI RGCY 5 cut(s) 35, 86, 131, 149, 327
CviKI_1 RGCY 5 cut(s) 35, 86, 131, 149, 327
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 2 cut(s) 50, 132
DpnI GATC 2 cut(s) 69, 195
DpnII GATC 2 cut(s) 67, 193
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 243
FaeI CATG 1 cut(s) 173
FaiI YATR 5 cut(s) 102, 171, 192, 237, 239
FatI CATG 1 cut(s) 169
FauNDI CATATG 1 cut(s) 237
FokI GGATG 1 cut(s) 286
HgaI GACGC 1 cut(s) 306
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 1 cut(s) 173
HinfI GANTC 2 cut(s) 105, 275
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 1 cut(s) 29
HpyCH4III ACNGT 3 cut(s) 57, 154, 292
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 44, 241
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 137, 146
HpyF3I CTNAG 2 cut(s) 50, 132
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 1 cut(s) 173
KpnI GGTACC 1 cut(s) 83
Kzo9I GATC 2 cut(s) 67, 193
LpnPI CCDG 4 cut(s) 78, 96, 131, 158
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 4 cut(s) 17, 28, 106, 257
MalI GATC 2 cut(s) 69, 195
MboI GATC 2 cut(s) 67, 193
MboII GAAGA 3 cut(s) 223, 270, 273
MluCI AATT 1 cut(s) 71
MlyI GAGTC 2 cut(s) 114, 269
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 2 cut(s) 46, 306
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 1 cut(s) 93
MspA1I CMGCKG 2 cut(s) 86, 327
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 41, 137, 146
NdeI CATATG 1 cut(s) 237
NdeII GATC 2 cut(s) 67, 193
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 17, 106
NsiI ATGCAT 1 cut(s) 243
PleI GAGTC 2 cut(s) 113, 269
PpsI GAGTC 2 cut(s) 113, 269
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 81
PvuII CAGCTG 2 cut(s) 86, 327
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 2 cut(s) 67, 193
SchI GAGTC 2 cut(s) 114, 269
ScrFI CCNGG 1 cut(s) 146
SetI ASST 4 cut(s) 30, 88, 133, 329
Sse9I AATT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 3 cut(s) 57, 154, 292
TaiI ACGT 1 cut(s) 30
TasI AATT 1 cut(s) 71
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 2 cut(s) 115, 169
TseFI GTSAC 2 cut(s) 17, 106
Tsp45I GTSAC 2 cut(s) 17, 106
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 2 cut(s) 115, 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.