Rh1DG067600

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002187
Physical Location & Seq
Forward (+)
11923467 .. 11927974
4508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG067600.1

Sequence Viewer

Length: 741 bp
ATGTTGGGTCTGAGAGATATCCTCCTGATTGCTCCAAACCATTCTTCTGTGCACCAACAAAACCAACCCATTTCCTCTGACCACCCAGCTCTCCCTCTTCCTTCCTCCACAGCTCTTGGGGTTGGCCTCGGTATTTTCCCTCTCCTCACTGCAACCCCATGTGGCCAAAATGCTCCGACCGCCGAGGGCAATCCGGACAATTCACGTTTCTGGAGCCTGAGAACGTACCCGGAGCTGAATTCTTCCAAGCAAGACATGCTCAGTTTTGGGAATCACGGCGCCGCCGAAAGTCAACAGGTGGCGGAATCCGATGACGGAAATGTGAACGGAGAAGGTGGTGGTCGTGGCGGTGAAGACAGTGGCATGAGGGCTTGCAAGGACTGTGGGAACAGAGCCAAGAAAGGCTGCGAGTATTCGAGGTGCAGGACTTGTTGCAGAGGCAGGGGATATGACTGCTCCACTCACGTGAGGAGCACGTGGGTTCCGGCAGCGAGGCGGCGGGAAAGGCAGATGGGGGTGACCGTTGCTGTTGCTGGTGGTGTTGCTAGTGGCGGCGGCGGTGAAGGTTCTTCCGGTTCTTCTTCCGTTGCCAAAAGACCAAGAGTAATGATGCCATCAAAGAATATACAAATCTCAGACAGTCATTACCAGATCAAGTTCGGGTACCAGCTGTTTTTAAGTGCCATAGAGTCACTGCCATTAGCAATGGTGAGGCCGAGATTGCTTACCAGGCTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

246

Amino Acids

26.17

Weight (kDa)

9.13

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 123 - 206 3.5e-31 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 663
AccB1I GGYRCC 2 cut(s) 278, 663
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 9 cut(s) 180, 282, 302, 348, 496, 499, 552, 555, 558
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 238
AcvI CACGTG 2 cut(s) 466, 477
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 2 cut(s) 227, 665
AjnI CCWGG 1 cut(s) 728
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AleI CACNNNNGTG 1 cut(s) 464
AluBI AGCT 4 cut(s) 89, 113, 235, 670
AluI AGCT 4 cut(s) 89, 113, 235, 670
Alw21I GWGCWC 2 cut(s) 54, 476
Alw44I GTGCAC 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 3 cut(s) 124, 163, 713
ApaLI GTGCAC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 405, 488
ApoI RAATTY 1 cut(s) 238
Asp718I GGTACC 1 cut(s) 663
AspLEI GCGC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 4 cut(s) 362, 529, 572, 721
BaeGI GKGCMC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 2 cut(s) 278, 663
BbrPI CACGTG 2 cut(s) 466, 477
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 2 cut(s) 54, 476
BbvI GCAGC 2 cut(s) 392, 500
BccI CCATC 2 cut(s) 505, 622
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 730
BcnI CCSGG 1 cut(s) 230
BfaI CTAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 6 cut(s) 282, 406, 489, 497, 553, 556
BlsI GCNGC 6 cut(s) 283, 407, 490, 498, 554, 557
Bme1390I CCNGG 2 cut(s) 230, 730
BmiI GGNNCC 4 cut(s) 215, 280, 483, 665
BmrFI CCNGG 2 cut(s) 230, 730
BmsI GCATC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 360
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 2 cut(s) 466, 477
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 127, 183
BsaWI WCCGGW 2 cut(s) 193, 572
Bse3DI GCAATG 1 cut(s) 711
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 1 cut(s) 730
BseDI CCNNGG 2 cut(s) 127, 183
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 3 cut(s) 209, 274, 648
BseRI GAGGAG 2 cut(s) 134, 484
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 2 cut(s) 392, 500
BseYI CCCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 442
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 3 cut(s) 126, 165, 715
BshNI GGYRCC 2 cut(s) 278, 663
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 54, 476
BsiSI CCGG 4 cut(s) 194, 230, 485, 573
BsnI GGCC 3 cut(s) 126, 165, 715
Bsp1286I GDGCHC 2 cut(s) 54, 476
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 1 cut(s) 651
BspACI CCGC 9 cut(s) 180, 282, 302, 348, 496, 499, 552, 555, 558
BspANI GGCC 3 cut(s) 126, 165, 715
BspCNI CTCAG 3 cut(s) 210, 273, 647
BspEI TCCGGA 1 cut(s) 193
BspLI GGNNCC 4 cut(s) 215, 280, 483, 665
BspT107I GGYRCC 2 cut(s) 278, 663
BsrDI GCAATG 1 cut(s) 711
BssECI CCNNGG 2 cut(s) 127, 183
BssMI GATC 1 cut(s) 651
BssNI GRCGYC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 730
Bst4CI ACNGT 5 cut(s) 359, 383, 523, 641, 738
Bst6I CTCTTC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 256
BstBAI YACGTR 2 cut(s) 466, 477
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 4 cut(s) 11, 218, 260, 634
BstEII GGTNACC 1 cut(s) 517
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 1 cut(s) 654
BstMBI GATC 1 cut(s) 651
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 5 cut(s) 179, 256, 505, 721, 730
BstNI CCWGG 1 cut(s) 730
BstNSI RCATGY 1 cut(s) 259
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 2 cut(s) 228, 728
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 392, 500
BstV2I GAAGAC 1 cut(s) 360
BsuRI GGCC 3 cut(s) 126, 165, 715
BtsI GCAGTG 2 cut(s) 147, 692
BtsIMutI CAGTG 3 cut(s) 147, 364, 692
Cac8I GCNNGC 1 cut(s) 373
CfoI GCGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 226, 664
CspCI CAANNNNNGTGG 4 cut(s) 97, 132, 364, 399
CviAII CATG 3 cut(s) 159, 256, 364
CviQI GTAC 2 cut(s) 226, 664
DdeI CTNAG 4 cut(s) 11, 218, 260, 634
DinI GGCGCC 1 cut(s) 280
DpnI GATC 1 cut(s) 653
DpnII GATC 1 cut(s) 651
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EciI GGCGGA 1 cut(s) 317
Eco32I GATATC 1 cut(s) 19
Eco72I CACGTG 2 cut(s) 466, 477
Eco91I GGTNACC 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 728
EcoRV GATATC 1 cut(s) 19
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
FaeI CATG 3 cut(s) 162, 259, 367
FaiI YATR 6 cut(s) 160, 257, 365, 450, 626, 686
FatI CATG 3 cut(s) 158, 255, 363
FauI CCCGC 1 cut(s) 492
Fnu4HI GCNGC 6 cut(s) 282, 406, 489, 497, 553, 556
Fsp4HI GCNGC 6 cut(s) 282, 406, 489, 497, 553, 556
FspBI CTAG 1 cut(s) 546
GlaI GCGC 1 cut(s) 280
GluI GCNGC 6 cut(s) 282, 406, 489, 497, 553, 556
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 232
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 126, 165, 715
HapII CCGG 4 cut(s) 194, 230, 485, 573
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 3 cut(s) 162, 259, 367
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 3 cut(s) 271, 305, 689
HpaII CCGG 4 cut(s) 194, 230, 485, 573
HphI GGTGA 4 cut(s) 362, 529, 572, 721
Hpy166II GTNNAC 3 cut(s) 52, 293, 325
Hpy188I TCNGA 5 cut(s) 12, 79, 177, 310, 637
Hpy188III TCNNGA 3 cut(s) 25, 194, 211
Hpy8I GTNNAC 3 cut(s) 52, 293, 325
HpyAV CCTTC 3 cut(s) 111, 326, 557
HpyCH4III ACNGT 5 cut(s) 359, 383, 523, 641, 738
HpyCH4IV ACGT 4 cut(s) 205, 224, 465, 476
HpyCH4V TGCA 5 cut(s) 52, 152, 375, 423, 435
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 256, 505, 721, 730
HpyF3I CTNAG 4 cut(s) 11, 218, 260, 634
HpySE526I ACGT 4 cut(s) 205, 224, 465, 476
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 3 cut(s) 162, 259, 367
HspAI GCGC 1 cut(s) 279
KasI GGCGCC 1 cut(s) 278
Kpn2I TCCGGA 1 cut(s) 193
KpnI GGTACC 1 cut(s) 667
Kzo9I GATC 1 cut(s) 651
LmnI GCTCC 6 cut(s) 37, 178, 213, 232, 461, 471
Lsp1109I GCAGC 2 cut(s) 392, 500
LweI GCATC 1 cut(s) 600
MaeI CTAG 1 cut(s) 546
MaeII ACGT 4 cut(s) 205, 224, 465, 476
MaeIII GTNAC 2 cut(s) 517, 690
MalI GATC 1 cut(s) 653
MboI GATC 1 cut(s) 651
MboII GAAGA 7 cut(s) 36, 89, 234, 365, 561, 570, 573
MhlI GDGCHC 2 cut(s) 54, 476
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 2 cut(s) 199, 238
MluNI TGGCCA 1 cut(s) 165
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 1 cut(s) 200
Mox20I TGGCCA 1 cut(s) 165
MroI TCCGGA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 165
MseI TTAA 1 cut(s) 677
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 670
MspI CCGG 4 cut(s) 194, 230, 485, 573
MspR9I CCNGG 2 cut(s) 230, 730
MvaI CCWGG 1 cut(s) 730
MwoI GCNNNNNNNGC 5 cut(s) 179, 256, 505, 721, 730
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 1 cut(s) 230
NdeII GATC 1 cut(s) 651
NlaIII CATG 3 cut(s) 162, 259, 367
NlaIV GGNNCC 4 cut(s) 215, 280, 483, 665
NmeAIII GCCGAG 2 cut(s) 208, 741
NmuCI GTSAC 2 cut(s) 517, 690
NspI RCATGY 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 2 cut(s) 271, 305
PkrI GCNGC 6 cut(s) 283, 407, 490, 498, 554, 557
PleI GAGTC 1 cut(s) 697
PluTI GGCGCC 1 cut(s) 282
PmaCI CACGTG 2 cut(s) 466, 477
PmlI CACGTG 2 cut(s) 466, 477
PpsI GAGTC 1 cut(s) 697
Ppu21I YACGTR 2 cut(s) 466, 477
Psp6I CCWGG 1 cut(s) 728
PspCI CACGTG 2 cut(s) 466, 477
PspEI GGTNACC 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 728
PspN4I GGNNCC 4 cut(s) 215, 280, 483, 665
PvuII CAGCTG 1 cut(s) 670
RsaI GTAC 2 cut(s) 227, 665
RsaNI GTAC 2 cut(s) 226, 664
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 1 cut(s) 677
SatI GCNGC 6 cut(s) 282, 406, 489, 497, 553, 556
Sau3AI GATC 1 cut(s) 651
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 2 cut(s) 230, 730
SduI GDGCHC 2 cut(s) 54, 476
SfaNI GCATC 1 cut(s) 600
SfoI GGCGCC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 464
Sse9I AATT 2 cut(s) 199, 238
SsiI CCGC 9 cut(s) 180, 282, 302, 348, 496, 499, 552, 555, 558
SspDI GGCGCC 1 cut(s) 278
SspMI CTAG 1 cut(s) 546
StyD4I CCNGG 2 cut(s) 228, 728
TaaI ACNGT 5 cut(s) 359, 383, 523, 641, 738
TaiI ACGT 4 cut(s) 208, 227, 468, 479
TaqI TCGA 1 cut(s) 416
TasI AATT 2 cut(s) 199, 238
TauI GCSGC 4 cut(s) 284, 499, 555, 558
TfiI GAWTC 2 cut(s) 271, 305
Tru1I TTAA 1 cut(s) 677
Tru9I TTAA 1 cut(s) 677
TscAI CASTG 3 cut(s) 154, 364, 699
TseFI GTSAC 2 cut(s) 517, 690
TseI GCWGC 2 cut(s) 405, 488
Tsp45I GTSAC 2 cut(s) 517, 690
TspGWI ACGGA 3 cut(s) 330, 342, 574
TspRI CASTG 3 cut(s) 154, 364, 699
VneI GTGCAC 1 cut(s) 50
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 259
XspI CTAG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.