FvH4_7g19180

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001241
Physical Location & Seq
Forward (+)
15886879 .. 15892005
5127 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19180.t2

Sequence Viewer

Length: 1641 bp
ATGGGTTTTTTGGGTACTGTATTGGGGGTTTTGGGTTTTGGCATTGGAAGTCTGATTGGACTGGTGGTGGGTTTCTTCCTTTTCATCTATTCAGAGCCCAAGAAAGTGAAGGACCCAGTAATCAGGCCACTACATGAACTAGAGAAAAGTAACTTGGAAGATATTCTAAATGAAATTCCATTGTGGATCAAATGCCCTGATTATGATCGAGTAGACTGGCTAAACAAGTTTCTCTTGGATATGTGGCCTTACCTTGACAAGTCAATTTGCTCCACAATAAGAAGCATGGCACAACCTATCTTTGCAGAATACATTGGCAAGTATCACATTGAGACAATTGAATTCGACGAACTAAGTCTCGGAACTCTGCCACCCATAATATATGGTCTGAAAGTTTGTGAGACTAATGAGAAAGAACTAGTCATGGAACCAGCATTTAGGTGGGCTGGCAACCCCAACATAGTTCTGGTGGTTAAGTTGTTGTCTCTAAGAGTTAAAATTCAGTTAGTGGATTTGCAAGTATTTGCAGCACCACGGATAACTCTGAAGCCTCTTGTGCCAACGTTTCCATGTTTCGCAAACATTGTGGTTTCTTTATTGGAAAAGCCACATGTAGATTTTGGGATGAACATATTGGGAGGGGACATCATGTCCATTCCAGGCCTCTATCCATTTATTCAGGACACCATCAAGAGACAAGTCGCAAACCTCTATCTCTGGCCTCAAACACTTGATATCTCCATTCTTGATGCTTCAACAGCGGCTATAAAGAAGCCTGTTGGAATACTTCAAGTAAAGGTTGTTCGAGCACTGAAGCTTTTAAGGATGGACTTCCTGGGAACTTCGGATCCTTACGTGAAACTTAGCCTCACTGAAGATAGGTTGCCAGCAAAGAAAACCACTATTAAGATGAAATCTTTGAATCCTGAGTGGAATGAGAAGTTCAAGCTTATTGTGAAAGACCCCTATACTCAAGGGCTTGAGTTACAAGTCTATGACTGGGACAAGGTTGGCAGACATGACAGATTGGGAATGCAACTTATTCCTTTACAAGTGCTAACTCCTGGGGAGACAAAGGAATTTGTGCTGGATTTGGTCAAGAACACAAATCTTAATGATCCTCAAAACAAGAAGCGTAGAGGACAACTTGTGGTGGAGCTTACTTATGTTCCTTTAAAATCAGATAGCCTGACATCTAATGGACCTGATGGTGGATATGGGAGAACTGAGAGTGGAATTAGCAAGTCATCAGATAGTGGCGAAACCCTGGATGAAGCAGGTTTACTGTCAGTGATGGTCGTGGGAGCTGAGGAAGTAGAAGGGGAGCATCACAACAATCCTTATGCTTTGCTTTGCTTTAAAGGAGAAGAAAAGAAAACAAAGGTGATAAAAAAATCTCGAAACCCAAGTTGGAATGAAGATTTCCAGTTCATGCTTGATGAACCTCCAGTAAATGAGAAGATCCATATTGAGGTCCTGAGCAGAAGCAGAGCCCTTAGTTTCAGAAGAAAGGAATCATTGGGATATGTGGAAATTAATCTCTCTGATGTGGTACACAATGGACGAATCAACCAAAAGTACCATTTAATTGACTCCAAAAATGGAAAGTTACATGTAGAGCTTAGTTGGACTAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001505 GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0005544 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0006906 GO:0006996 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008104 GO:0008150 GO:0008289 GO:0009987 GO:0010638 GO:0010646 GO:0010647 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016079 GO:0016192 GO:0017156 GO:0017157 GO:0017158 GO:0019905 GO:0023051 GO:0023052 GO:0023056 GO:0023061 GO:0030133 GO:0030276 GO:0031338 GO:0031340 GO:0031410 GO:0031982 GO:0032024 GO:0032879 GO:0032880 GO:0032940 GO:0033036 GO:0033043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045055 GO:0045921 GO:0045956 GO:0046872 GO:0046883 GO:0046887 GO:0046903 GO:0046907 GO:0048284 GO:0048489 GO:0048518 GO:0048522 GO:0048791 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070201 GO:0070382 GO:0071840 GO:0071944 GO:0090087 GO:0090174 GO:0090276 GO:0090277 GO:0097479 GO:0097480 GO:0097708 GO:0098916 GO:0099003 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:1903305 GO:1903307 GO:1903530 GO:1903532 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

547

Amino Acids

61.77

Weight (kDa)

6.82

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 67 - 242 2.2e-14 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 261 - 362 1.4e-24 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1268
AccI GTMKAC 1 cut(s) 213
AciI CCGC 1 cut(s) 761
AclI AACGTT 1 cut(s) 563
AclWI GGATC 5 cut(s) 194, 842, 855, 1112, 1456
AcsI RAATTY 4 cut(s) 174, 341, 498, 1079
AcuI CTGAAG 3 cut(s) 566, 833, 894
AfaI GTAC 3 cut(s) 16, 1554, 1580
AfiI CCNNNNNNNGG 2 cut(s) 1211, 1471
AflIII ACRYGT 2 cut(s) 610, 1612
AgsI TTSAA 5 cut(s) 341, 756, 791, 922, 946
AhdI GACNNNNNGTC 1 cut(s) 649
AhlI ACTAGT 1 cut(s) 418
AjnI CCWGG 4 cut(s) 658, 834, 1063, 1266
AjuI GAANNNNNNNTTGG 4 cut(s) 137, 169, 1393, 1425
AloI GAACNNNNNNTCC 2 cut(s) 832, 864
AluBI AGCT 5 cut(s) 817, 949, 1159, 1307, 1621
AluI AGCT 5 cut(s) 817, 949, 1159, 1307, 1621
Alw21I GWGCWC 1 cut(s) 811
Alw26I GTCTC 6 cut(s) 326, 362, 395, 489, 688, 1064
AlwI GGATC 5 cut(s) 194, 842, 855, 1112, 1456
AoxI GGCC 4 cut(s) 125, 245, 661, 719
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 4 cut(s) 174, 341, 498, 1079
AseI ATTAAT 1 cut(s) 1536
Asp700I GAANNNNTTC 1 cut(s) 162
AspS9I GGNCC 3 cut(s) 112, 1202, 1474
AsuHPI GGTGA 1 cut(s) 1396
AvaII GGWCC 3 cut(s) 112, 1202, 1474
BamHI GGATCC 1 cut(s) 847
BanII GRGCYC 2 cut(s) 99, 1495
BarI GAAGNNNNNNTAC 2 cut(s) 1266, 1298
Bbv12I GWGCWC 1 cut(s) 811
BbvCI CCTCAGC 1 cut(s) 1308
BbvI GCAGC 1 cut(s) 539
BccI CCATC 4 cut(s) 695, 820, 1202, 1288
BciT130I CCWGG 4 cut(s) 660, 836, 1065, 1268
BcoDI GTCTC 6 cut(s) 326, 362, 395, 489, 688, 1064
BcuI ACTAGT 1 cut(s) 418
BfaI CTAG 2 cut(s) 140, 419
BfuAI ACCTGC 1 cut(s) 1268
BisI GCNGC 2 cut(s) 528, 762
BlsI GCNGC 2 cut(s) 529, 763
Bme1390I CCNGG 4 cut(s) 660, 836, 1065, 1268
Bme18I GGWCC 3 cut(s) 112, 1202, 1474
BmeRI GACNNNNNGTC 1 cut(s) 649
BmgT120I GGNCC 3 cut(s) 112, 1202, 1474
BmiI GGNNCC 3 cut(s) 114, 429, 849
BmrFI CCNGG 4 cut(s) 660, 836, 1065, 1268
BmrI ACTGGG 2 cut(s) 110, 1009
BmsI GCATC 2 cut(s) 739, 1336
BmuI ACTGGG 2 cut(s) 110, 1009
BpmI CTGGAG 1 cut(s) 1431
Bpu10I CCTNAGC 2 cut(s) 1308, 1478
BpuEI CTTGAG 2 cut(s) 957, 1001
BsaAI YACGTR 1 cut(s) 856
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 4 cut(s) 533, 835, 1064, 1266
Bsc4I CCNNNNNNNGG 2 cut(s) 1211, 1471
Bse1I ACTGG 6 cut(s) 66, 116, 221, 1004, 1426, 1448
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 4 cut(s) 660, 836, 1065, 1268
BseDI CCNNGG 4 cut(s) 533, 835, 1064, 1266
BseGI GGATG 3 cut(s) 630, 831, 1276
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 2 cut(s) 1211, 1471
BseMII CTCAG 4 cut(s) 918, 1218, 1299, 1469
BseNI ACTGG 6 cut(s) 66, 116, 221, 1004, 1426, 1448
BseXI GCAGC 1 cut(s) 539
BshFI GGCC 4 cut(s) 127, 247, 663, 721
BsiHKAI GWGCWC 1 cut(s) 811
BslFI GGGAC 2 cut(s) 656, 1016
BslI CCNNNNNNNGG 2 cut(s) 1211, 1471
BsmAI GTCTC 6 cut(s) 326, 362, 395, 489, 688, 1064
BsmFI GGGAC 2 cut(s) 656, 1016
BsmI GAATGC 1 cut(s) 1038
BsnI GGCC 4 cut(s) 127, 247, 663, 721
Bsp1286I GDGCHC 3 cut(s) 99, 811, 1495
Bsp143I GATC 5 cut(s) 186, 205, 847, 1117, 1461
BspACI CCGC 1 cut(s) 761
BspANI GGCC 4 cut(s) 127, 247, 663, 721
BspCNI CTCAG 4 cut(s) 919, 1219, 1300, 1470
BspLI GGNNCC 3 cut(s) 114, 429, 849
BspMI ACCTGC 1 cut(s) 1268
BspPI GGATC 5 cut(s) 194, 842, 855, 1112, 1456
BsrI ACTGG 6 cut(s) 66, 116, 221, 1004, 1426, 1448
BssECI CCNNGG 4 cut(s) 533, 835, 1064, 1266
BssMI GATC 5 cut(s) 186, 205, 847, 1117, 1461
Bst2UI CCWGG 4 cut(s) 660, 836, 1065, 1268
Bst4CI ACNGT 2 cut(s) 19, 1287
BstBAI YACGTR 1 cut(s) 856
BstC8I GCNNGC 2 cut(s) 448, 888
BstDSI CCRYGG 1 cut(s) 533
BstF5I GGATG 3 cut(s) 630, 831, 1276
BstKTI GATC 5 cut(s) 189, 208, 850, 1120, 1464
BstMAI GTCTC 6 cut(s) 326, 362, 395, 489, 688, 1064
BstMBI GATC 5 cut(s) 186, 205, 847, 1117, 1461
BstMWI GCNNNNNNNGC 2 cut(s) 556, 758
BstNI CCWGG 4 cut(s) 660, 836, 1065, 1268
BstNSI RCATGY 2 cut(s) 614, 1616
BstSCI CCNGG 4 cut(s) 658, 834, 1063, 1266
BstV1I GCAGC 1 cut(s) 539
BstX2I RGATCY 2 cut(s) 847, 1461
BstYI RGATCY 2 cut(s) 847, 1461
BsuRI GGCC 4 cut(s) 127, 247, 663, 721
BtgI CCRYGG 1 cut(s) 533
BtsCI GGATG 3 cut(s) 630, 831, 1276
BtsIMutI CAGTG 3 cut(s) 809, 870, 1296
BveI ACCTGC 1 cut(s) 1268
Cac8I GCNNGC 2 cut(s) 448, 888
Cfr13I GGNCC 3 cut(s) 112, 1202, 1474
Csp6I GTAC 3 cut(s) 15, 1553, 1579
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 9 cut(s) 134, 286, 424, 570, 611, 649, 1019, 1432, 1613
CviQI GTAC 3 cut(s) 15, 1553, 1579
DpnI GATC 5 cut(s) 188, 207, 849, 1119, 1463
DpnII GATC 5 cut(s) 186, 205, 847, 1117, 1461
DraI TTTAAA 2 cut(s) 1176, 1360
DriI GACNNNNNGTC 1 cut(s) 649
Eam1105I GACNNNNNGTC 1 cut(s) 649
Eco147I AGGCCT 1 cut(s) 663
Eco24I GRGCYC 2 cut(s) 99, 1495
Eco32I GATATC 1 cut(s) 736
Eco47I GGWCC 3 cut(s) 112, 1202, 1474
Eco57I CTGAAG 3 cut(s) 566, 833, 894
EcoO109I RGGNCCY 2 cut(s) 112, 1474
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 4 cut(s) 658, 834, 1063, 1266
EcoRV GATATC 1 cut(s) 736
EcoT38I GRGCYC 2 cut(s) 99, 1495
FaeI CATG 9 cut(s) 137, 289, 427, 573, 614, 652, 1022, 1435, 1616
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 2 cut(s) 656, 1016
FatI CATG 9 cut(s) 133, 285, 423, 569, 610, 648, 1018, 1431, 1612
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 528, 762
FokI GGATG 3 cut(s) 637, 838, 1283
FriOI GRGCYC 2 cut(s) 99, 1495
Fsp4HI GCNGC 2 cut(s) 528, 762
FspBI CTAG 2 cut(s) 140, 419
GluI GCNGC 2 cut(s) 528, 762
GsuI CTGGAG 1 cut(s) 1431
HaeIII GGCC 4 cut(s) 127, 247, 663, 721
Hin1II CATG 9 cut(s) 137, 289, 427, 573, 614, 652, 1022, 1435, 1616
HindIII AAGCTT 2 cut(s) 815, 947
HinfI GANTC 4 cut(s) 922, 1514, 1566, 1592
HphI GGTGA 1 cut(s) 1396
Hpy166II GTNNAC 3 cut(s) 214, 1283, 1555
Hpy188III TCNNGA 7 cut(s) 680, 691, 746, 926, 1099, 1398, 1477
Hpy8I GTNNAC 3 cut(s) 214, 1283, 1555
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 2 cut(s) 103, 1313
HpyCH4III ACNGT 2 cut(s) 19, 1287
HpyCH4IV ACGT 2 cut(s) 563, 855
HpyCH4V TGCA 4 cut(s) 305, 517, 527, 1036
HpyF10VI GCNNNNNNNGC 2 cut(s) 556, 758
HpySE526I ACGT 2 cut(s) 563, 855
Hsp92II CATG 9 cut(s) 137, 289, 427, 573, 614, 652, 1022, 1435, 1616
Kzo9I GATC 5 cut(s) 186, 205, 847, 1117, 1461
LmnI GCTCC 4 cut(s) 275, 1156, 1304, 1324
Lsp1109I GCAGC 1 cut(s) 539
LweI GCATC 2 cut(s) 739, 1336
MaeI CTAG 2 cut(s) 140, 419
MaeII ACGT 2 cut(s) 563, 855
MaeIII GTNAC 3 cut(s) 149, 984, 1608
MalI GATC 5 cut(s) 188, 207, 849, 1119, 1463
MboI GATC 5 cut(s) 186, 205, 847, 1117, 1461
MboII GAAGA 7 cut(s) 67, 170, 887, 1379, 1430, 1471, 1518
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 2 cut(s) 847, 1461
MhlI GDGCHC 3 cut(s) 99, 811, 1495
MluCI AATT 9 cut(s) 174, 264, 336, 341, 498, 1079, 1236, 1533, 1587
MlyI GAGTC 1 cut(s) 1586
MmeI TCCRAC 3 cut(s) 760, 1391, 1607
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 9 cut(s) 474, 495, 821, 906, 1113, 1175, 1359, 1536, 1586
MslI CAYNNNNRTG 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 761
MspR9I CCNGG 4 cut(s) 660, 836, 1065, 1268
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 1038
MvaI CCWGG 4 cut(s) 660, 836, 1065, 1268
MwoI GCNNNNNNNGC 2 cut(s) 556, 758
NdeII GATC 5 cut(s) 186, 205, 847, 1117, 1461
NlaIII CATG 9 cut(s) 137, 289, 427, 573, 614, 652, 1022, 1435, 1616
NlaIV GGNNCC 3 cut(s) 114, 429, 849
NspI RCATGY 2 cut(s) 614, 1616
PceI AGGCCT 1 cut(s) 663
PciI ACATGT 2 cut(s) 610, 1612
PctI GAATGC 1 cut(s) 1038
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 3 cut(s) 922, 1514, 1566
PkrI GCNGC 2 cut(s) 529, 763
PleI GAGTC 1 cut(s) 1586
PpsI GAGTC 1 cut(s) 1586
Ppu21I YACGTR 1 cut(s) 856
PpuMI RGGWCCY 2 cut(s) 112, 1474
PscI ACATGT 2 cut(s) 610, 1612
PshBI ATTAAT 1 cut(s) 1536
Psp1406I AACGTT 1 cut(s) 563
Psp5II RGGWCCY 2 cut(s) 112, 1474
Psp6I CCWGG 4 cut(s) 658, 834, 1063, 1266
PspGI CCWGG 4 cut(s) 658, 834, 1063, 1266
PspN4I GGNNCC 3 cut(s) 114, 429, 849
PspPI GGNCC 3 cut(s) 112, 1202, 1474
PspPPI RGGWCCY 2 cut(s) 112, 1474
PsrI GAACNNNNNNTAC 2 cut(s) 786, 818
PsuI RGATCY 2 cut(s) 847, 1461
RsaI GTAC 3 cut(s) 16, 1554, 1580
RsaNI GTAC 3 cut(s) 15, 1553, 1579
RseI CAYNNNNRTG 1 cut(s) 439
SaqAI TTAA 9 cut(s) 474, 495, 821, 906, 1113, 1175, 1359, 1536, 1586
SatI GCNGC 2 cut(s) 528, 762
Sau3AI GATC 5 cut(s) 186, 205, 847, 1117, 1461
Sau96I GGNCC 3 cut(s) 112, 1202, 1474
SchI GAGTC 1 cut(s) 1586
ScrFI CCNGG 4 cut(s) 660, 836, 1065, 1268
SduI GDGCHC 3 cut(s) 99, 811, 1495
SfaNI GCATC 2 cut(s) 739, 1336
SinI GGWCC 3 cut(s) 112, 1202, 1474
SmiMI CAYNNNNRTG 1 cut(s) 439
SmlI CTYRAG 2 cut(s) 972, 980
SmoI CTYRAG 2 cut(s) 972, 980
SpeI ACTAGT 1 cut(s) 418
Sse9I AATT 9 cut(s) 174, 264, 336, 341, 498, 1079, 1236, 1533, 1587
SseBI AGGCCT 1 cut(s) 663
SsiI CCGC 1 cut(s) 761
SspMI CTAG 2 cut(s) 140, 419
StuI AGGCCT 1 cut(s) 663
StyD4I CCNGG 4 cut(s) 658, 834, 1063, 1266
TaaI ACNGT 2 cut(s) 19, 1287
TaiI ACGT 2 cut(s) 566, 858
TaqI TCGA 4 cut(s) 208, 345, 805, 1399
TasI AATT 9 cut(s) 174, 264, 336, 341, 498, 1079, 1236, 1533, 1587
TauI GCSGC 1 cut(s) 764
TfiI GAWTC 3 cut(s) 922, 1514, 1566
Tru1I TTAA 9 cut(s) 474, 495, 821, 906, 1113, 1175, 1359, 1536, 1586
Tru9I TTAA 9 cut(s) 474, 495, 821, 906, 1113, 1175, 1359, 1536, 1586
TscAI CASTG 3 cut(s) 816, 877, 1296
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 9 cut(s) 73, 150, 186, 641, 926, 1287, 1420, 1431, 1455
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 3 cut(s) 816, 877, 1296
VpaK11BI GGWCC 3 cut(s) 112, 1202, 1474
VspI ATTAAT 1 cut(s) 1536
XapI RAATTY 4 cut(s) 174, 341, 498, 1079
XceI RCATGY 2 cut(s) 614, 1616
XcmI CCANNNNNNNNNTGG 2 cut(s) 438, 463
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 2 cut(s) 140, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.