pycom01g13380

Synaptotagmin-3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
13854132 .. 13857970
3839 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13380.15

Sequence Viewer

Length: 1554 bp
ATGGGATTTGTGAGCAGTTTATTGGGAATTCTTGGTTTTGGAATTGGAATTCCTCTTGGACTCTTGGTGGGGTTTTTCCTTTTTGTTTATTCAAATCCCAAAGAAGTTGAGGATCCAGTTTGCAGGCCACTTCATGATTTAGATGAATTGGCCTTGCAAGATCTTCTTCCTGAAATTCCACTGTGGGTGAAGAACCCTAATTATCATAGAGTAGACTGGTTGAATAAATTTATTGCAGATTTATGGCCTTACCTTGAGAAGGAAATTGCGGGAACAATAAGAAGCGTGGCTCAACCTATATTTGATGAGTACATTGGAAAGTTTCAGATTGAATCAATTGAGTTTGAGAGAATAGATATGGGAACTCTTCCTCCTATTCTTAACGGTTTAGAGGTCTTTGAGACGAACGAGAAGGAATTAGTCATGGAACCATCAATAAAATGGGCTGGAAACCCCAACATAATTTTGGTGTTAAAAGTTCTGTCTTTACGAATTACAATGCAGTTAGTAGATTTACAAGTATATTTAGTGCCAAGGATAGCTTTCAAACCGCTTGTGCCTTCCTTTCCATGTTTTGCAAACATTGTGGTGTCTTTGATGGAGAAGGTGACCTCATATAGATTTTGGAATGAATATATTGGGAGCCGATATCATGTCTATACCCGGCCTCTATCGTTTTGTTCAGGTGCTGCACTGGAGACTATTAAAAAGCAAGTTGCAAGCCTCTACCTCTGGCCTCGGACGCTTGAAATACCTATCCTTGACGTTTCAACAGCGGCTGTAAAGAAGCCGGTGGGAATACTACGCGTGAATGATCGATCCGATCCTTATGTCAAGCTCAGCCTGACTGGAGATGGGCTACCAGCAAAGAAAACAACTGTCAAGAAGAAAAACCTGAACCCTGAGTGGAACGAGAAGTTCAAGCTTCTTGTGAAGGATCCTAAGACCCAACTTCTTCGGTTACAAGTCTTTGACTGGGACAAGGTTGGTGGGCATGATAGGATAGGAATGCAGGTAGTTCCTCTCAAACAACTTACACCCCATGAGACGAAAGAATTTAAACTTGATTTGCTCAAGGACACGAATATTAGCAATAGTCCAAACAAGAAGCAAAGAGGGCAGCTTGTGGTGGAGCTAACTTTTGTGCCTTTCAAAGAAGACAAAAGCAGATTTAGTGGACCCATTAATGCAGCACATAGGAGAAATGAAAGCGGAATTGATATGTCAATGTCATCACATGGGGGAAGCCTAGGCGGGGCAGGTTTACTATCGGTTATTATTCAAGGAGCCGAAAATGTGGAAGGGAAGTGCCACAACAATCCTTATGCCATCCTCCTATTTAGAGGAGAACAGAAGAAAACACATGTAAGCTTCGAAAAACTCGTGATCCACGTTGGAACGAGGAATTCCCTTTCATGTTGTGAGCAAGAGGACCGGCATTATACTAGAATCGTTGGGACATGTAGAAATCAATCTAAGAGACGTTGTGCACAACGGCCGGATCAACCACAAATACCACTTAATCAATTCAAAAAATGGAGTGATACATGTTGA

Protein Analysis

518

Amino Acids

58.69

Weight (kDa)

8.98

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1003, 1250
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 807
AciI CCGC 5 cut(s) 269, 551, 776, 1212, 1254
AclWI GGATC 8 cut(s) 107, 120, 813, 818, 932, 945, 1381, 1509
AcoI YGGCCR 1 cut(s) 1496
AcsI RAATTY 6 cut(s) 27, 48, 174, 227, 1055, 1405
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 259, 1255
AflIII ACRYGT 4 cut(s) 805, 1363, 1460, 1547
AloI GAACNNNNNNTCC 2 cut(s) 355, 387
AluBI AGCT 6 cut(s) 542, 838, 925, 1123, 1135, 1371
AluI AGCT 6 cut(s) 542, 838, 925, 1123, 1135, 1371
Alw21I GWGCWC 1 cut(s) 1492
Alw26I GTCTC 4 cut(s) 395, 692, 1040, 1474
Alw44I GTGCAC 1 cut(s) 1488
AlwI GGATC 8 cut(s) 107, 120, 813, 818, 932, 945, 1381, 1509
AlwNI CAGNNNCTG 2 cut(s) 689, 779
AoxI GGCC 6 cut(s) 125, 150, 245, 665, 734, 1496
ApaLI GTGCAC 1 cut(s) 1488
ApeKI GCWGC 3 cut(s) 689, 1120, 1190
ApoI RAATTY 6 cut(s) 27, 48, 174, 227, 1055, 1405
AseI ATTAAT 1 cut(s) 1185
AspA2I CCTAGG 1 cut(s) 1249
AspS9I GGNCC 2 cut(s) 1178, 1432
AsuC2I CCSGG 1 cut(s) 664
AsuHPI GGTGA 2 cut(s) 199, 619
AsuII TTCGAA 1 cut(s) 1374
AvaII GGWCC 2 cut(s) 1178, 1432
AvrII CCTAGG 1 cut(s) 1249
BaeGI GKGCMC 1 cut(s) 1492
BamHI GGATCC 2 cut(s) 112, 937
BauI CACGAG 1 cut(s) 1382
BbsI GAAGAC 1 cut(s) 1164
Bbv12I GWGCWC 1 cut(s) 1492
BbvI GCAGC 3 cut(s) 676, 1132, 1202
BccI CCATC 4 cut(s) 439, 592, 848, 1337
BceAI ACGGC 1 cut(s) 1511
BcnI CCSGG 1 cut(s) 664
BcoDI GTCTC 4 cut(s) 395, 692, 1040, 1474
BfaI CTAG 2 cut(s) 1250, 1446
BfuAI ACCTGC 2 cut(s) 1003, 1250
BglII AGATCT 1 cut(s) 160
BisI GCNGC 4 cut(s) 690, 777, 1121, 1191
BlnI CCTAGG 1 cut(s) 1249
BlpI GCTNAGC 1 cut(s) 839
BlsI GCNGC 4 cut(s) 691, 778, 1122, 1192
Bme1390I CCNGG 1 cut(s) 664
Bme18I GGWCC 2 cut(s) 1178, 1432
BmgT120I GGNCC 2 cut(s) 1178, 1432
BmiI GGNNCC 6 cut(s) 114, 429, 644, 939, 1180, 1288
BmrFI CCNGG 1 cut(s) 664
BmrI ACTGGG 1 cut(s) 985
BmuI ACTGGG 1 cut(s) 985
BpiI GAAGAC 1 cut(s) 1164
BpmI CTGGAG 2 cut(s) 716, 870
Bpu1102I GCTNAGC 1 cut(s) 839
Bpu14I TTCGAA 1 cut(s) 1374
BpuEI CTTGAG 2 cut(s) 275, 1058
BpuMI CCSGG 1 cut(s) 664
Bsa29I ATCGAT 1 cut(s) 817
BsaJI CCNNGG 3 cut(s) 533, 737, 1249
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 1255
Bse118I RCCGGY 2 cut(s) 790, 1434
Bse1I ACTGG 5 cut(s) 116, 221, 699, 853, 980
BseCI ATCGAT 1 cut(s) 817
BseDI CCNNGG 3 cut(s) 533, 737, 1249
BseGI GGATG 1 cut(s) 1329
BseLI CCNNNNNNNGG 2 cut(s) 259, 1255
BseMII CTCAG 2 cut(s) 853, 894
BseNI ACTGG 5 cut(s) 116, 221, 699, 853, 980
BseRI GAGGAG 1 cut(s) 1359
BseSI GKGCMC 1 cut(s) 1492
BseX3I CGGCCG 1 cut(s) 1496
BseXI GCAGC 3 cut(s) 676, 1132, 1202
BsgI GTGCAG 1 cut(s) 675
Bsh1236I CGCG 1 cut(s) 807
Bsh1285I CGRYCG 1 cut(s) 1499
BshFI GGCC 6 cut(s) 127, 152, 247, 667, 736, 1498
BshVI ATCGAT 1 cut(s) 817
BsiEI CGRYCG 1 cut(s) 1499
BsiHKAI GWGCWC 1 cut(s) 1492
BsiSI CCGG 4 cut(s) 664, 791, 1435, 1499
BslFI GGGAC 2 cut(s) 992, 1471
BslI CCNNNNNNNGG 2 cut(s) 259, 1255
BsmAI GTCTC 4 cut(s) 395, 692, 1040, 1474
BsmBI CGTCTC 3 cut(s) 395, 1040, 1474
BsmFI GGGAC 2 cut(s) 992, 1471
BsmI GAATGC 1 cut(s) 1014
BsnI GGCC 6 cut(s) 127, 152, 247, 667, 736, 1498
Bsp119I TTCGAA 1 cut(s) 1374
Bsp1286I GDGCHC 1 cut(s) 1492
Bsp143I GATC 8 cut(s) 112, 160, 814, 818, 823, 937, 1386, 1501
Bsp1720I GCTNAGC 1 cut(s) 839
BspACI CCGC 5 cut(s) 269, 551, 776, 1212, 1254
BspANI GGCC 6 cut(s) 127, 152, 247, 667, 736, 1498
BspCNI CTCAG 2 cut(s) 852, 895
BspDI ATCGAT 1 cut(s) 817
BspFNI CGCG 1 cut(s) 807
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 6 cut(s) 114, 429, 644, 939, 1180, 1288
BspMI ACCTGC 2 cut(s) 1003, 1250
BspPI GGATC 8 cut(s) 107, 120, 813, 818, 932, 945, 1381, 1509
BspT104I TTCGAA 1 cut(s) 1374
BsrFI RCCGGY 2 cut(s) 790, 1434
BsrI ACTGG 5 cut(s) 116, 221, 699, 853, 980
BssAI RCCGGY 2 cut(s) 790, 1434
BssECI CCNNGG 3 cut(s) 533, 737, 1249
BssMI GATC 8 cut(s) 112, 160, 814, 818, 823, 937, 1386, 1501
BssSI CACGAG 1 cut(s) 1382
BssT1I CCWWGG 2 cut(s) 533, 1249
Bst2BI CACGAG 1 cut(s) 1382
Bst4CI ACNGT 3 cut(s) 183, 386, 880
Bst6I CTCTTC 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 1374
BstC8I GCNNGC 2 cut(s) 125, 721
BstDEI CTNAG 4 cut(s) 839, 903, 942, 1476
BstEII GGTNACC 1 cut(s) 607
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 1329
BstFNI CGCG 1 cut(s) 807
BstKTI GATC 8 cut(s) 115, 163, 817, 821, 826, 940, 1389, 1504
BstMAI GTCTC 4 cut(s) 395, 692, 1040, 1474
BstMBI GATC 8 cut(s) 112, 160, 814, 818, 823, 937, 1386, 1501
BstMCI CGRYCG 1 cut(s) 1499
BstMWI GCNNNNNNNGC 2 cut(s) 742, 1117
BstNSI RCATGY 3 cut(s) 1367, 1464, 1551
BstPI GGTNACC 1 cut(s) 607
BstSCI CCNGG 1 cut(s) 662
BstSLI GKGCMC 1 cut(s) 1492
BstUI CGCG 1 cut(s) 807
BstV1I GCAGC 3 cut(s) 676, 1132, 1202
BstV2I GAAGAC 1 cut(s) 1164
BstX2I RGATCY 3 cut(s) 112, 160, 937
BstYI RGATCY 3 cut(s) 112, 160, 937
BstZI CGGCCG 1 cut(s) 1496
Bsu15I ATCGAT 1 cut(s) 817
BsuRI GGCC 6 cut(s) 127, 152, 247, 667, 736, 1498
BsuTUI ATCGAT 1 cut(s) 817
BtsCI GGATG 1 cut(s) 1329
BtsIMutI CAGTG 2 cut(s) 179, 692
BveI ACCTGC 2 cut(s) 1003, 1250
Cac8I GCNNGC 2 cut(s) 125, 721
CaiI CAGNNNCTG 2 cut(s) 689, 779
CciI TCATGA 1 cut(s) 133
Cfr10I RCCGGY 2 cut(s) 790, 1434
Cfr13I GGNCC 2 cut(s) 1178, 1432
ClaI ATCGAT 1 cut(s) 817
CseI GACGC 1 cut(s) 751
Csp6I GTAC 1 cut(s) 310
CspCI CAANNNNNGTGG 4 cut(s) 567, 602, 970, 1005
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 4 cut(s) 839, 903, 942, 1476
DpnI GATC 8 cut(s) 114, 162, 816, 820, 825, 939, 1388, 1503
DpnII GATC 8 cut(s) 112, 160, 814, 818, 823, 937, 1386, 1501
DraI TTTAAA 1 cut(s) 1060
EaeI YGGCCR 1 cut(s) 1496
EagI CGGCCG 1 cut(s) 1496
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EclXI CGGCCG 1 cut(s) 1496
Eco130I CCWWGG 2 cut(s) 533, 1249
Eco32I GATATC 1 cut(s) 650
Eco47I GGWCC 2 cut(s) 1178, 1432
Eco52I CGGCCG 1 cut(s) 1496
Eco91I GGTNACC 1 cut(s) 607
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 607
EcoRI GAATTC 3 cut(s) 27, 48, 1405
EcoRV GATATC 1 cut(s) 650
EcoT14I CCWWGG 2 cut(s) 533, 1249
ErhI CCWWGG 2 cut(s) 533, 1249
Esp3I CGTCTC 3 cut(s) 395, 1040, 1474
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 526, 558
FaqI GGGAC 2 cut(s) 992, 1471
FauI CCCGC 2 cut(s) 262, 1247
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 4 cut(s) 690, 777, 1121, 1191
FokI GGATG 1 cut(s) 1316
Fsp4HI GCNGC 4 cut(s) 690, 777, 1121, 1191
FspBI CTAG 2 cut(s) 1250, 1446
GluI GCNGC 4 cut(s) 690, 777, 1121, 1191
GsuI CTGGAG 2 cut(s) 716, 870
HaeIII GGCC 6 cut(s) 127, 152, 247, 667, 736, 1498
HapII CCGG 4 cut(s) 664, 791, 1435, 1499
HgaI GACGC 1 cut(s) 751
HindIII AAGCTT 2 cut(s) 923, 1369
HinfI GANTC 3 cut(s) 60, 332, 1449
HpaII CCGG 4 cut(s) 664, 791, 1435, 1499
HphI GGTGA 2 cut(s) 199, 619
Hpy166II GTNNAC 4 cut(s) 214, 1178, 1265, 1490
Hpy188I TCNGA 3 cut(s) 327, 741, 823
Hpy188III TCNNGA 4 cut(s) 134, 170, 883, 1384
Hpy8I GTNNAC 4 cut(s) 214, 1178, 1265, 1490
HpyAV CCTTC 6 cut(s) 253, 406, 570, 598, 928, 1295
HpyCH4III ACNGT 3 cut(s) 183, 386, 880
HpyCH4IV ACGT 3 cut(s) 765, 1392, 1483
HpyF10VI GCNNNNNNNGC 2 cut(s) 742, 1117
HpyF3I CTNAG 4 cut(s) 839, 903, 942, 1476
HpySE526I ACGT 3 cut(s) 765, 1392, 1483
Kzo9I GATC 8 cut(s) 112, 160, 814, 818, 823, 937, 1386, 1501
LmnI GCTCC 3 cut(s) 642, 1132, 1286
Lsp1109I GCAGC 3 cut(s) 676, 1132, 1202
MaeI CTAG 2 cut(s) 1250, 1446
MaeII ACGT 3 cut(s) 765, 1392, 1483
MaeIII GTNAC 2 cut(s) 607, 960
MalI GATC 8 cut(s) 114, 162, 816, 820, 825, 939, 1388, 1503
MboI GATC 8 cut(s) 112, 160, 814, 818, 823, 937, 1386, 1501
MboII GAAGA 8 cut(s) 155, 158, 202, 359, 898, 947, 1169, 1366
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 3 cut(s) 112, 160, 937
MhlI GDGCHC 1 cut(s) 1492
MluI ACGCGT 1 cut(s) 805
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 1375
MseI TTAA 6 cut(s) 381, 473, 705, 1059, 1185, 1521
MslI CAYNNNNRTG 1 cut(s) 587
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 4 cut(s) 664, 791, 1435, 1499
MspR9I CCNGG 1 cut(s) 664
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 1014
MvnI CGCG 1 cut(s) 807
MwoI GCNNNNNNNGC 2 cut(s) 742, 1117
NciI CCSGG 1 cut(s) 664
NdeII GATC 8 cut(s) 112, 160, 814, 818, 823, 937, 1386, 1501
NlaIV GGNNCC 6 cut(s) 114, 429, 644, 939, 1180, 1288
NmuCI GTSAC 1 cut(s) 607
NspI RCATGY 3 cut(s) 1367, 1464, 1551
NspV TTCGAA 1 cut(s) 1374
PagI TCATGA 1 cut(s) 133
PciI ACATGT 3 cut(s) 1363, 1460, 1547
PcsI WCGNNNNNNNCGW 2 cut(s) 1380, 1389
PctI GAATGC 1 cut(s) 1014
PfeI GAWTC 2 cut(s) 332, 1449
PkrI GCNGC 4 cut(s) 691, 778, 1122, 1192
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PscI ACATGT 3 cut(s) 1363, 1460, 1547
PshBI ATTAAT 1 cut(s) 1185
PspEI GGTNACC 1 cut(s) 607
PspN4I GGNNCC 6 cut(s) 114, 429, 644, 939, 1180, 1288
PspPI GGNCC 2 cut(s) 1178, 1432
PstNI CAGNNNCTG 2 cut(s) 689, 779
PsuI RGATCY 3 cut(s) 112, 160, 937
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 587
SaqAI TTAA 6 cut(s) 381, 473, 705, 1059, 1185, 1521
SatI GCNGC 4 cut(s) 690, 777, 1121, 1191
Sau3AI GATC 8 cut(s) 112, 160, 814, 818, 823, 937, 1386, 1501
Sau96I GGNCC 2 cut(s) 1178, 1432
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 1 cut(s) 664
SduI GDGCHC 1 cut(s) 1492
SfuI TTCGAA 1 cut(s) 1374
SinI GGWCC 2 cut(s) 1178, 1432
SmiMI CAYNNNNRTG 1 cut(s) 587
SmlI CTYRAG 2 cut(s) 254, 1073
SmoI CTYRAG 2 cut(s) 254, 1073
SsiI CCGC 5 cut(s) 269, 551, 776, 1212, 1254
SspI AATATT 1 cut(s) 1087
SspMI CTAG 2 cut(s) 1250, 1446
StyD4I CCNGG 1 cut(s) 662
StyI CCWWGG 2 cut(s) 533, 1249
TaaI ACNGT 3 cut(s) 183, 386, 880
TaiI ACGT 3 cut(s) 768, 1395, 1486
TaqI TCGA 2 cut(s) 817, 1374
TatI WGTACW 1 cut(s) 309
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 2 cut(s) 332, 1449
Tru1I TTAA 6 cut(s) 381, 473, 705, 1059, 1185, 1521
Tru9I TTAA 6 cut(s) 381, 473, 705, 1059, 1185, 1521
TscAI CASTG 2 cut(s) 186, 699
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 3 cut(s) 689, 1120, 1190
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 5 cut(s) 122, 159, 645, 1221, 1404
TspRI CASTG 2 cut(s) 186, 699
VneI GTGCAC 1 cut(s) 1488
VpaK11BI GGWCC 2 cut(s) 1178, 1432
VspI ATTAAT 1 cut(s) 1185
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 6 cut(s) 27, 48, 174, 227, 1055, 1405
XceI RCATGY 3 cut(s) 1367, 1464, 1551
XcmI CCANNNNNNNNNTGG 2 cut(s) 438, 463
XmaJI CCTAGG 1 cut(s) 1249
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 1250, 1446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.