pycom07g16760

Synaptotagmin-3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
19213608 .. 19217630
4023 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16760.7

Sequence Viewer

Length: 1629 bp
ATGGGAATTTTAAGCACTTTCTTTGGAATTGTCGGCTTTGGCATTGGAAGTCTGGTGGGACTCTTGGTGGGTTTCTATCTCTTCATCTATTCAGAGCCTGGGGAAGTGAAGGATCCAGTTATCAGGCCGCTGCACGAATTAGATTCTAGCACTTTGCAAGGTCTTCTACCTGAAATACCAATGTGGGTTAAATTTTCCGATTTTGAACGAGTAGACTGGCTAAACAAGTTTCTCTCCGACATTTGGCCTTACCTTGACAAGGCACTTTGTTGTACAATAAGAAACACGGCAGAACCTATCTTCGCAGAGTACATTGGGAAGTATCGCATTGAGGCAATTGAATTTGACAAGTTAAGTCTTGGAAGTCTGCCACCCATAATCTATGGTCTAAAAGTTTATGAGACTAATGAGAATGAATTAATCATAGAACCGGCATTTAGATGGGCTGGCAATCCCAACATAGTTGTGGTGTTAAAGTTGTTGTCTCTAAGAATTACGGTTCAGTTAGTGGATTTGCAATTATTTGCAGCACCACGGGTTACTCTGAAACCTCTTGTGCCGACGTTTCCATGTTTTGCAAGCATTATCGTGTCTTTATTGGACAAGCCACATGTTGATTTTGGAATCAAAATATTGGGAGGGGACGTCATGGCCATACCAGGCCTCTATCGGTTTGTTCAGGAGACCATTAAAAAGCAAGTTGCAAGCCTCTACCTATGGCCCCAAACACTGGAAATACCTGTTCTTGATGCTTCAATGGTGGCCAAGAAGCCTGTAGGGATACTTCATGTAAAGGTCGTCCGAGCACTGAAACTTTTGAAGATGGACATCTTGGGAAGTTCCGATCCTTACGTCAAACTAAACCTCACTGAAGATAAGTTGCCCGCAAAGCAAACCACCGTCAAGATGAATAAGTTGAATCCTGAGTGGAATGAGAAGTTCAGGCTTATTGTGAAAGACCCCGAAACTCAAGCTCTTGAGTTACAACTCTATGATTGGGACAAGGTTGGCAGACATGACAAATTGGGAATGCAGTTAGTTCCTCTGCAAGTGCTAACACCCGGTGCGACAAAGGAATTTGTGCTAGATTTGGTCAAGAACACAAATATCAATGATCCTCAAAACAAGAAGCGTCGGGGGCAAGTTATAGTGGAGGTTGCTTTTGTTCCTTTCAAATCAGAAAGCAGTAAGCATAATGGAACTAGTAATGGATATGGGAAAAGCGAAAGTGGAAAGTCATTAGAGAGTGATGAGTCCCTCAGCGGAGCTGGCGTACTATCCATTTTGATCCAGGGAGCTGAGGACGTAGAAGGGGAGCATCACAGCAATCCTTATGCTTTGGTTTGCTTTAGAGGAGAAGTAAAGAAAACTAAGATGATAAGAAAATCCCGCAATCCACTTTGGAATGAAGATTTCCAATTTATGCTTGATGAGCCTCCTTTGCATGACAAGATTCGTATCGAGCTCAAGAGCAAAAGCAGAGCCCTGATCCGAGCAAAGGAATCACTAGGATACGTGGAAATTAATCTTGCCGATGTGGTACACAACGGACGCATCAATGAAAAGTTCCATTTGATTGACTCCCACAATGGAAGGATACATGCAGAGCTAAGTTGGACAAAGGCCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

543

Amino Acids

61.07

Weight (kDa)

7.67

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 648
AccB7I CCANNNNNTGG 1 cut(s) 730
AccI GTMKAC 1 cut(s) 213
AciI CCGC 4 cut(s) 128, 885, 1263, 1390
AclWI GGATC 6 cut(s) 107, 120, 839, 1109, 1282, 1483
AcoI YGGCCR 2 cut(s) 651, 762
AcsI RAATTY 4 cut(s) 6, 191, 341, 1076
AcuI CTGAAG 1 cut(s) 891
AcyI GRCGYC 1 cut(s) 645
AdeI CACNNNGTG 1 cut(s) 1064
AfaI GTAC 4 cut(s) 274, 311, 1275, 1542
AfiI CCNNNNNNNGG 4 cut(s) 243, 259, 730, 1498
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 6 cut(s) 206, 341, 756, 820, 919, 1174
AhlI ACTAGT 1 cut(s) 1202
AjnI CCWGG 3 cut(s) 97, 658, 1290
AluBI AGCT 5 cut(s) 974, 1268, 1298, 1465, 1609
AluI AGCT 5 cut(s) 974, 1268, 1298, 1465, 1609
Alw21I GWGCWC 2 cut(s) 808, 1467
Alw26I GTCTC 3 cut(s) 395, 489, 677
AlwI GGATC 6 cut(s) 107, 120, 839, 1109, 1282, 1483
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 7 cut(s) 125, 245, 651, 661, 719, 762, 1623
ApeKI GCWGC 2 cut(s) 130, 527
ApoI RAATTY 4 cut(s) 6, 191, 341, 1076
AseI ATTAAT 2 cut(s) 419, 1524
AspS9I GGNCC 1 cut(s) 720
AsuC2I CCSGG 1 cut(s) 1062
BalI TGGCCA 2 cut(s) 653, 764
BamHI GGATCC 1 cut(s) 112
BanII GRGCYC 2 cut(s) 1467, 1486
BarI GAAGNNNNNNTAC 2 cut(s) 768, 800
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 808, 1467
BbvCI CCTCAGC 2 cut(s) 1259, 1299
BbvI GCAGC 2 cut(s) 117, 539
BccI CCATC 2 cut(s) 435, 817
BceAI ACGGC 1 cut(s) 303
BciT130I CCWGG 3 cut(s) 99, 660, 1292
BciVI GTATCC 3 cut(s) 774, 1505, 1590
BcnI CCSGG 1 cut(s) 1062
BcoDI GTCTC 3 cut(s) 395, 489, 677
BcuI ACTAGT 1 cut(s) 1202
BfaI CTAG 4 cut(s) 147, 1085, 1203, 1508
BfmI CTRYAG 1 cut(s) 774
BfuI GTATCC 3 cut(s) 774, 1505, 1590
BisI GCNGC 3 cut(s) 128, 131, 528
BlsI GCNGC 3 cut(s) 129, 132, 529
Bme1390I CCNGG 4 cut(s) 99, 660, 1062, 1292
BmgT120I GGNCC 1 cut(s) 720
BmiI GGNNCC 2 cut(s) 114, 722
BmrFI CCNGG 4 cut(s) 99, 660, 1062, 1292
BmsI GCATC 3 cut(s) 739, 1327, 1563
BpiI GAAGAC 1 cut(s) 155
Bpu10I CCTNAGC 2 cut(s) 1259, 1299
BpuEI CTTGAG 3 cut(s) 954, 998, 1451
BpuMI CCSGG 1 cut(s) 1062
BsaAI YACGTR 1 cut(s) 1516
BsaBI GATNNNNATC 2 cut(s) 827, 1457
BsaHI GRCGYC 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 3 cut(s) 98, 533, 1291
BsaXI ACNNNNNCTCC 4 cut(s) 630, 660, 1257, 1287
Bsc4I CCNNNNNNNGG 4 cut(s) 243, 259, 730, 1498
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 3 cut(s) 116, 221, 735
Bse8I GATNNNNATC 2 cut(s) 827, 1457
BseBI CCWGG 3 cut(s) 99, 660, 1292
BseDI CCNNGG 3 cut(s) 98, 533, 1291
BseJI GATNNNNATC 2 cut(s) 827, 1457
BseLI CCNNNNNNNGG 4 cut(s) 243, 259, 730, 1498
BseMII CTCAG 3 cut(s) 915, 1273, 1290
BseNI ACTGG 3 cut(s) 116, 221, 735
BseRI GAGGAG 1 cut(s) 1368
BseXI GCAGC 2 cut(s) 117, 539
BsgI GTGCAG 1 cut(s) 116
BshFI GGCC 7 cut(s) 127, 247, 653, 663, 721, 764, 1625
BsiHKAI GWGCWC 2 cut(s) 808, 1467
BsiSI CCGG 2 cut(s) 431, 1062
BslFI GGGAC 4 cut(s) 72, 656, 1013, 1240
BslI CCNNNNNNNGG 4 cut(s) 243, 259, 730, 1498
BsmAI GTCTC 3 cut(s) 395, 489, 677
BsmFI GGGAC 4 cut(s) 72, 656, 1013, 1240
BsmI GAATGC 1 cut(s) 1035
BsnI GGCC 7 cut(s) 127, 247, 653, 663, 721, 764, 1625
Bso31I GGTCTC 1 cut(s) 677
Bsp1286I GDGCHC 3 cut(s) 808, 1467, 1486
Bsp1407I TGTACA 1 cut(s) 272
Bsp143I GATC 5 cut(s) 112, 844, 1114, 1287, 1488
BspACI CCGC 4 cut(s) 128, 885, 1263, 1390
BspANI GGCC 7 cut(s) 127, 247, 653, 663, 721, 764, 1625
BspCNI CTCAG 3 cut(s) 916, 1272, 1291
BspLI GGNNCC 2 cut(s) 114, 722
BspPI GGATC 6 cut(s) 107, 120, 839, 1109, 1282, 1483
BspTNI GGTCTC 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 272
BsrI ACTGG 3 cut(s) 116, 221, 735
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 3 cut(s) 98, 533, 1291
BssMI GATC 5 cut(s) 112, 844, 1114, 1287, 1488
BssNI GRCGYC 1 cut(s) 645
Bst2UI CCWGG 3 cut(s) 99, 660, 1292
Bst4CI ACNGT 2 cut(s) 499, 901
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 645
BstAUI TGTACA 1 cut(s) 272
BstBAI YACGTR 1 cut(s) 1516
BstC8I GCNNGC 5 cut(s) 448, 580, 706, 885, 1270
BstDEI CTNAG 6 cut(s) 488, 924, 1259, 1299, 1371, 1610
BstDSI CCRYGG 1 cut(s) 533
BstENI CCTNNNNNAGG 1 cut(s) 257
BstKTI GATC 5 cut(s) 115, 847, 1117, 1290, 1491
BstMAI GTCTC 3 cut(s) 395, 489, 677
BstMBI GATC 5 cut(s) 112, 844, 1114, 1287, 1488
BstMWI GCNNNNNNNGC 5 cut(s) 889, 1138, 1269, 1432, 1441
BstNI CCWGG 3 cut(s) 99, 660, 1292
BstNSI RCATGY 2 cut(s) 614, 1604
BstSCI CCNGG 4 cut(s) 97, 658, 1060, 1290
BstSFI CTRYAG 1 cut(s) 774
BstV1I GCAGC 2 cut(s) 117, 539
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuI GTATCC 3 cut(s) 774, 1505, 1590
BsuRI GGCC 7 cut(s) 127, 247, 653, 663, 721, 764, 1625
BtgI CCRYGG 1 cut(s) 533
BtsIMutI CAGTG 3 cut(s) 728, 806, 867
Cac8I GCNNGC 5 cut(s) 448, 580, 706, 885, 1270
CaiI CAGNNNCTG 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 720
CseI GACGC 2 cut(s) 1121, 1560
Csp6I GTAC 4 cut(s) 273, 310, 1274, 1541
CviAII CATG 7 cut(s) 570, 611, 649, 788, 1016, 1445, 1601
CviQI GTAC 4 cut(s) 273, 310, 1274, 1541
DdeI CTNAG 6 cut(s) 488, 924, 1259, 1299, 1371, 1610
DpnI GATC 5 cut(s) 114, 846, 1116, 1289, 1490
DpnII GATC 5 cut(s) 112, 844, 1114, 1287, 1488
DraIII CACNNNGTG 1 cut(s) 1064
EaeI YGGCCR 2 cut(s) 651, 762
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 1465
Eco147I AGGCCT 2 cut(s) 663, 1625
Eco24I GRGCYC 2 cut(s) 1467, 1486
Eco31I GGTCTC 1 cut(s) 677
Eco53kI GAGCTC 1 cut(s) 1465
Eco57I CTGAAG 1 cut(s) 891
EcoICRI GAGCTC 1 cut(s) 1465
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRII CCWGG 3 cut(s) 97, 658, 1290
EcoT38I GRGCYC 2 cut(s) 1467, 1486
FaeI CATG 7 cut(s) 573, 614, 652, 791, 1019, 1448, 1604
FaqI GGGAC 4 cut(s) 72, 656, 1013, 1240
FatI CATG 7 cut(s) 569, 610, 648, 787, 1015, 1444, 1600
FauI CCCGC 2 cut(s) 892, 1397
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 128, 131, 528
FriOI GRGCYC 2 cut(s) 1467, 1486
Fsp4HI GCNGC 3 cut(s) 128, 131, 528
FspBI CTAG 4 cut(s) 147, 1085, 1203, 1508
GluI GCNGC 3 cut(s) 128, 131, 528
HaeIII GGCC 7 cut(s) 127, 247, 653, 663, 721, 764, 1625
HapII CCGG 2 cut(s) 431, 1062
HgaI GACGC 2 cut(s) 1121, 1560
Hin1I GRCGYC 1 cut(s) 645
Hin1II CATG 7 cut(s) 573, 614, 652, 791, 1019, 1448, 1604
HinfI GANTC 8 cut(s) 60, 143, 624, 919, 1253, 1453, 1502, 1580
HpaII CCGG 2 cut(s) 431, 1062
Hpy166II GTNNAC 2 cut(s) 214, 1543
Hpy188I TCNGA 8 cut(s) 94, 199, 238, 546, 803, 844, 1180, 1493
Hpy188III TCNNGA 7 cut(s) 680, 746, 904, 923, 977, 1096, 1468
Hpy8I GTNNAC 2 cut(s) 214, 1543
Hpy99I CGWCG 2 cut(s) 565, 1137
HpyAV CCTTC 3 cut(s) 103, 1304, 1587
HpyCH4III ACNGT 2 cut(s) 499, 901
HpyCH4IV ACGT 5 cut(s) 563, 645, 852, 1305, 1515
HpyF10VI GCNNNNNNNGC 5 cut(s) 889, 1138, 1269, 1432, 1441
HpyF3I CTNAG 6 cut(s) 488, 924, 1259, 1299, 1371, 1610
HpySE526I ACGT 5 cut(s) 563, 645, 852, 1305, 1515
Hsp92I GRCGYC 1 cut(s) 645
Hsp92II CATG 7 cut(s) 573, 614, 652, 791, 1019, 1448, 1604
Kzo9I GATC 5 cut(s) 112, 844, 1114, 1287, 1488
LmnI GCTCC 3 cut(s) 1265, 1295, 1315
Lsp1109I GCAGC 2 cut(s) 117, 539
LweI GCATC 3 cut(s) 739, 1327, 1563
MaeI CTAG 4 cut(s) 147, 1085, 1203, 1508
MaeII ACGT 5 cut(s) 563, 645, 852, 1305, 1515
MaeIII GTNAC 2 cut(s) 538, 981
MalI GATC 5 cut(s) 114, 846, 1116, 1289, 1490
MboI GATC 5 cut(s) 112, 844, 1114, 1287, 1488
MboII GAAGA 6 cut(s) 73, 155, 292, 832, 884, 1421
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 3 cut(s) 808, 1467, 1486
MlsI TGGCCA 2 cut(s) 653, 764
MluNI TGGCCA 2 cut(s) 653, 764
MlyI GAGTC 3 cut(s) 54, 1262, 1574
MmeI TCCRAC 2 cut(s) 261, 1595
Mox20I TGGCCA 2 cut(s) 653, 764
MscI TGGCCA 2 cut(s) 653, 764
MseI TTAA 7 cut(s) 11, 189, 353, 419, 473, 690, 1524
MslI CAYNNNNRTG 3 cut(s) 439, 464, 587
Msp20I TGGCCA 2 cut(s) 653, 764
MspA1I CMGCKG 2 cut(s) 130, 1263
MspI CCGG 2 cut(s) 431, 1062
MspR9I CCNGG 4 cut(s) 99, 660, 1062, 1292
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 1035
MvaI CCWGG 3 cut(s) 99, 660, 1292
MwoI GCNNNNNNNGC 5 cut(s) 889, 1138, 1269, 1432, 1441
NciI CCSGG 1 cut(s) 1062
NdeII GATC 5 cut(s) 112, 844, 1114, 1287, 1488
NlaIII CATG 7 cut(s) 573, 614, 652, 791, 1019, 1448, 1604
NlaIV GGNNCC 2 cut(s) 114, 722
NspI RCATGY 2 cut(s) 614, 1604
PceI AGGCCT 2 cut(s) 663, 1625
PciI ACATGT 1 cut(s) 610
PctI GAATGC 1 cut(s) 1035
PfeI GAWTC 5 cut(s) 143, 624, 919, 1453, 1502
PflMI CCANNNNNTGG 1 cut(s) 730
PkrI GCNGC 3 cut(s) 129, 132, 529
PleI GAGTC 3 cut(s) 54, 1261, 1574
PpsI GAGTC 3 cut(s) 54, 1261, 1574
Ppu21I YACGTR 1 cut(s) 1516
PscI ACATGT 1 cut(s) 610
PshBI ATTAAT 2 cut(s) 419, 1524
Psp124BI GAGCTC 1 cut(s) 1467
Psp6I CCWGG 3 cut(s) 97, 658, 1290
PspGI CCWGG 3 cut(s) 97, 658, 1290
PspN4I GGNNCC 2 cut(s) 114, 722
PspPI GGNCC 1 cut(s) 720
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 4 cut(s) 274, 311, 1275, 1542
RsaNI GTAC 4 cut(s) 273, 310, 1274, 1541
RseI CAYNNNNRTG 3 cut(s) 439, 464, 587
SacI GAGCTC 1 cut(s) 1467
SaqAI TTAA 7 cut(s) 11, 189, 353, 419, 473, 690, 1524
SatI GCNGC 3 cut(s) 128, 131, 528
Sau3AI GATC 5 cut(s) 112, 844, 1114, 1287, 1488
Sau96I GGNCC 1 cut(s) 720
SchI GAGTC 3 cut(s) 54, 1262, 1574
ScrFI CCNGG 4 cut(s) 99, 660, 1062, 1292
SduI GDGCHC 3 cut(s) 808, 1467, 1486
SfaNI GCATC 3 cut(s) 739, 1327, 1563
SfcI CTRYAG 1 cut(s) 774
SmiMI CAYNNNNRTG 3 cut(s) 439, 464, 587
SmlI CTYRAG 3 cut(s) 969, 977, 1466
SmoI CTYRAG 3 cut(s) 969, 977, 1466
SpeI ACTAGT 1 cut(s) 1202
SseBI AGGCCT 2 cut(s) 663, 1625
SsiI CCGC 4 cut(s) 128, 885, 1263, 1390
SspI AATATT 1 cut(s) 633
SspMI CTAG 4 cut(s) 147, 1085, 1203, 1508
SstI GAGCTC 1 cut(s) 1467
StuI AGGCCT 2 cut(s) 663, 1625
StyD4I CCNGG 4 cut(s) 97, 658, 1060, 1290
TaaI ACNGT 2 cut(s) 499, 901
TaiI ACGT 5 cut(s) 566, 648, 855, 1308, 1518
TaqI TCGA 1 cut(s) 1461
TatI WGTACW 2 cut(s) 272, 309
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 5 cut(s) 143, 624, 919, 1453, 1502
Tru1I TTAA 7 cut(s) 11, 189, 353, 419, 473, 690, 1524
Tru9I TTAA 7 cut(s) 11, 189, 353, 419, 473, 690, 1524
TscAI CASTG 3 cut(s) 735, 813, 874
TseI GCWGC 2 cut(s) 130, 527
TspDTI ATGAA 6 cut(s) 73, 429, 776, 923, 1422, 1575
TspGWI ACGGA 1 cut(s) 1563
TspRI CASTG 3 cut(s) 735, 813, 874
Van91I CCANNNNNTGG 1 cut(s) 730
VspI ATTAAT 2 cut(s) 419, 1524
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 4 cut(s) 6, 191, 341, 1076
XceI RCATGY 2 cut(s) 614, 1604
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 4 cut(s) 147, 1085, 1203, 1508
ZraI GACGTC 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.