RLG00000024321

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001241
Physical Location & Seq
Forward (+)
34558084 .. 34562101
4018 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024321

Sequence Viewer

Length: 1704 bp
ATGAGACATCTGTATTTCATATTCGAGTTTATTGGATTTCTTATTGGGTTTCCGATCGGTCTTCTACTGGGTTTCTTCATATTCATATACTCATCACAGCCTAAGGATGTGAAGGATCCAGATATAAAATCACTAAATGAGTGTGATCCAAACTCTCTGGTTGATCTTTTCTCAGAGATTCCTCCATGGGTGAAGCACCCTGACTTTGAAAGAATTGACTGGTTGAACAAGGCTTTACATGATATGTGGCCTTACCTTGATAAGGCAATATGCAAGATTATCAGAGAAACAGCAGAGCCAATATTTGCAGAGTACGTTGGAAAATATCAGATAAGATCCATAGGATTTCAGAGCTTGAATCTTGGAAGTCTTCCTCCTACAATTTATGGCAAAGTGCACGAAACCAATGAAAATGAACTAGTAATTGAACCTGCTATTAGATGGGCAGGAATTCCACACATAACTGTTGTGGTAAAAATATTGTCAGTTCGACTTATAGTTCAGCTGATGGATGTCCAAGTATTTGCAACACCAAGGATGATCTTAAGGCCTCTTGTACCAACATTCCCATGTTTTGGAAACATTACAGTGACTTTGATAGACAAGCCACATGTGGACTTTGGACTGAGATTACTGGGAGGGGATGTTATGGCAATCCCCGGTTTCTATCAATTTGTTCAGGAATATATAAGAAAACAAGTTGCTAGCCTTTACTTATGGCCCCAAACTTTGAACATACCAATTCTTCAGGGTTCATTATCAGGAACTATAAAGAAGCCTGTAGGCATACTGCATGTCAAGGTTGTAAGAGCTAAGAAACTCTTGAAGGCGGACATCATAGGAAGATCTGATCCTTATGTTAAAATCAAACTAACCGGGGAGAGGCTTCCATCAAAGAAAACTAGCATTAAGATGAGGAACTTGAACCCTGAATGGAATGAGAATTTCAAGCTTACAGTCAAAGATCCAGAGTCCCAATTCATTCAGTTCAATGTTTTCGACTGGGATCAGATTGGGACACATGACCCTTTGGGAATGCAAATTCTTCCACTGAAGTTGCTAACTCCATATGACACACAAGAATTTACGCTTGACTTAGTAAACAGCACAAACCCTTATGATCCTCAAAACAAGAAAAAAAGAGGCCAACTTATGGTGGAGTTGACATATAATCCTTTTATAGAAGAGAGTGGCAGTGGAATATATAACAGTGGACCTTTGGATGGAGATCAAGTGGTAGATGGAAAACAGCTTGGAATTAAAAGCCAAATTAGGAGCCGAAAGCCATCCATGTCCGTAGACACGTCTTCACAAATAGATGCAGCTGGTCTGCTTTTGGTTACAGTTCAAGGAGCAGAAGAACTTGAGAGCAAGCTTTACGATAACCCTAATCCTTACGTACTGGTTCGGTTTTCAGGAGAAAAGAGGAAAACCAAGATGATAAAGAGATCCCATCGGCCATATTGGAATGAAGAATTTCAGTTTGTGGTAGAAGAGGCGACTTTGAAGGAGAAGATTCGTTTTGAAGTAAAGAGTAAGAAAAGAAACCTTTTCGCTTATCGTTTCCGAAAAAAGGAATTGTTGGGGTACGTTGACATCAATTTTAGTGATGTGGTATACAACGGACGCATTAGAGGCAAGTACAATTTGATTAACTCGAAAAATGCAGCCATACATGTCGAGTTGCAGTGGAGCACCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

568

Amino Acids

65.13

Weight (kDa)

9.15

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 68 - 248 9.9e-16 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 262 - 360 4.4e-24 C2 domain
C2 PF00168 444 - 550 8.5e-17 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 439
AccB7I CCANNNNNTGG 2 cut(s) 575, 1153
AccI GTMKAC 2 cut(s) 1299, 1617
AciI CCGC 1 cut(s) 830
AclWI GGATC 9 cut(s) 110, 123, 140, 330, 845, 959, 1014, 1115, 1443
AcoI YGGCCR 1 cut(s) 1457
AcsI RAATTY 5 cut(s) 450, 943, 1041, 1082, 1475
AcuI CTGAAG 2 cut(s) 731, 1073
AcvI CACGTG 1 cut(s) 1701
AdeI CACNNNGTG 1 cut(s) 1701
AfaI GTAC 5 cut(s) 314, 558, 1401, 1589, 1643
AfiI CCNNNNNNNGG 6 cut(s) 262, 575, 882, 1153, 1223, 1573
AflII CTTAAG 1 cut(s) 544
AflIII ACRYGT 3 cut(s) 610, 1302, 1675
AhlI ACTAGT 1 cut(s) 418
AjiI CACGTC 1 cut(s) 1305
AluBI AGCT 7 cut(s) 354, 505, 812, 952, 1252, 1325, 1375
AluI AGCT 7 cut(s) 354, 505, 812, 952, 1252, 1325, 1375
Alw21I GWGCWC 2 cut(s) 399, 1697
Alw44I GTGCAC 1 cut(s) 395
AlwI GGATC 9 cut(s) 110, 123, 140, 330, 845, 959, 1014, 1115, 1443
AoxI GGCC 5 cut(s) 248, 548, 719, 1144, 1457
ApaLI GTGCAC 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 1322, 1667
ApoI RAATTY 5 cut(s) 450, 943, 1041, 1082, 1475
Asp700I GAANNNNTTC 1 cut(s) 1476
AspS9I GGNCC 2 cut(s) 720, 1214
AsuC2I CCSGG 2 cut(s) 660, 877
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 704
AvaII GGWCC 1 cut(s) 1214
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 399
BamHI GGATCC 1 cut(s) 115
BbrPI CACGTG 1 cut(s) 1701
BbsI GAAGAC 3 cut(s) 53, 362, 1299
Bbv12I GWGCWC 2 cut(s) 399, 1697
BbvI GCAGC 2 cut(s) 1334, 1679
BccI CCATC 7 cut(s) 435, 502, 898, 1217, 1235, 1294, 1461
BcnI CCSGG 2 cut(s) 660, 877
BcuI ACTAGT 1 cut(s) 418
BfaI CTAG 3 cut(s) 419, 705, 903
BfmI CTRYAG 1 cut(s) 780
BfrI CTTAAG 1 cut(s) 544
BfuAI ACCTGC 1 cut(s) 439
BglII AGATCT 1 cut(s) 845
BisI GCNGC 2 cut(s) 1323, 1668
BlsI GCNGC 2 cut(s) 1324, 1669
Bme1390I CCNGG 2 cut(s) 660, 877
Bme18I GGWCC 1 cut(s) 1214
BmgBI CACGTC 1 cut(s) 1305
BmgT120I GGNCC 2 cut(s) 720, 1214
BmiI GGNNCC 3 cut(s) 117, 722, 1277
BmrFI CCNGG 2 cut(s) 660, 877
BmrI ACTGGG 3 cut(s) 77, 644, 1012
BmsI GCATC 1 cut(s) 1309
BmtI GCTAGC 1 cut(s) 708
BmuI ACTGGG 3 cut(s) 77, 644, 1012
BpiI GAAGAC 3 cut(s) 53, 362, 1299
BpuEI CTTGAG 1 cut(s) 1385
BpuMI CCSGG 2 cut(s) 660, 877
BsaAI YACGTR 2 cut(s) 1399, 1701
BsaBI GATNNNNATC 1 cut(s) 1227
BsaJI CCNNGG 4 cut(s) 185, 533, 658, 876
BsaXI ACNNNNNCTCC 4 cut(s) 630, 660, 1218, 1248
Bsc4I CCNNNNNNNGG 6 cut(s) 262, 575, 882, 1153, 1223, 1573
Bse1I ACTGG 5 cut(s) 72, 224, 639, 1007, 1407
Bse21I CCTNAGG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 1227
BseDI CCNNGG 4 cut(s) 185, 533, 658, 876
BseGI GGATG 6 cut(s) 112, 517, 543, 649, 1228, 1286
BseJI GATNNNNATC 1 cut(s) 1227
BseLI CCNNNNNNNGG 6 cut(s) 262, 575, 882, 1153, 1223, 1573
BseMII CTCAG 2 cut(s) 186, 617
BseNI ACTGG 5 cut(s) 72, 224, 639, 1007, 1407
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 2 cut(s) 1334, 1679
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 5 cut(s) 250, 550, 721, 1146, 1459
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 399, 1697
BsiSI CCGG 2 cut(s) 660, 876
BslFI GGGAC 2 cut(s) 958, 1030
BslI CCNNNNNNNGG 6 cut(s) 262, 575, 882, 1153, 1223, 1573
BsmFI GGGAC 2 cut(s) 958, 1030
BsmI GAATGC 1 cut(s) 1041
BsnI GGCC 5 cut(s) 250, 550, 721, 1146, 1459
Bsp1286I GDGCHC 2 cut(s) 399, 1697
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 1 cut(s) 830
BspANI GGCC 5 cut(s) 250, 550, 721, 1146, 1459
BspCNI CTCAG 2 cut(s) 185, 618
BspLI GGNNCC 3 cut(s) 117, 722, 1277
BspMI ACCTGC 1 cut(s) 439
BspOI GCTAGC 1 cut(s) 708
BspPI GGATC 9 cut(s) 110, 123, 140, 330, 845, 959, 1014, 1115, 1443
BspTI CTTAAG 1 cut(s) 544
BsrI ACTGG 5 cut(s) 72, 224, 639, 1007, 1407
BssECI CCNNGG 4 cut(s) 185, 533, 658, 876
BssNAI GTATAC 1 cut(s) 1618
BssT1I CCWWGG 2 cut(s) 185, 533
Bst1107I GTATAC 1 cut(s) 1618
Bst4CI ACNGT 5 cut(s) 466, 589, 958, 1211, 1345
Bst6I CTCTTC 2 cut(s) 1179, 1488
BstAFI CTTAAG 1 cut(s) 544
BstBAI YACGTR 2 cut(s) 1399, 1701
BstC8I GCNNGC 2 cut(s) 706, 1373
BstDEI CTNAG 5 cut(s) 102, 172, 626, 813, 1096
BstDSI CCRYGG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 6 cut(s) 112, 517, 543, 649, 1228, 1286
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 1635
BstNSI RCATGY 3 cut(s) 614, 797, 1679
BstSCI CCNGG 2 cut(s) 658, 875
BstSFI CTRYAG 1 cut(s) 780
BstSLI GKGCMC 1 cut(s) 399
BstSNI TACGTA 1 cut(s) 1399
BstV1I GCAGC 2 cut(s) 1334, 1679
BstV2I GAAGAC 3 cut(s) 53, 362, 1299
BstX2I RGATCY 5 cut(s) 115, 335, 845, 964, 1448
BstYI RGATCY 5 cut(s) 115, 335, 845, 964, 1448
BstZ17I GTATAC 1 cut(s) 1618
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 5 cut(s) 250, 550, 721, 1146, 1459
BtgI CCRYGG 1 cut(s) 185
BtrI CACGTC 1 cut(s) 1305
BtsCI GGATG 6 cut(s) 112, 517, 543, 649, 1228, 1286
BtsI GCAGTG 2 cut(s) 1201, 1694
BtsIMutI CAGTG 5 cut(s) 594, 1049, 1201, 1216, 1694
BveI ACCTGC 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 706, 1373
Cfr13I GGNCC 2 cut(s) 720, 1214
CseI GACGC 1 cut(s) 1635
Csp6I GTAC 5 cut(s) 313, 557, 1400, 1588, 1642
CspCI CAANNNNNGTGG 2 cut(s) 1038, 1073
CviAII CATG 8 cut(s) 186, 239, 570, 611, 794, 1022, 1291, 1676
CviQI GTAC 5 cut(s) 313, 557, 1400, 1588, 1642
DdeI CTNAG 5 cut(s) 102, 172, 626, 813, 1096
DraIII CACNNNGTG 1 cut(s) 1701
EaeI YGGCCR 1 cut(s) 1457
Eam1104I CTCTTC 2 cut(s) 1179, 1488
EarI CTCTTC 2 cut(s) 1179, 1488
EciI GGCGGA 1 cut(s) 845
Eco105I TACGTA 1 cut(s) 1399
Eco130I CCWWGG 2 cut(s) 185, 533
Eco147I AGGCCT 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 1214
Eco57I CTGAAG 2 cut(s) 731, 1073
Eco72I CACGTG 1 cut(s) 1701
Eco81I CCTNAGG 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 450
EcoT14I CCWWGG 2 cut(s) 185, 533
ErhI CCWWGG 2 cut(s) 185, 533
FaeI CATG 8 cut(s) 189, 242, 573, 614, 797, 1025, 1294, 1679
FalI AAGNNNNNCTT 2 cut(s) 806, 838
FaqI GGGAC 2 cut(s) 958, 1030
FatI CATG 8 cut(s) 185, 238, 569, 610, 793, 1021, 1290, 1675
FauNDI CATATG 1 cut(s) 1069
FblI GTMKAC 2 cut(s) 1299, 1617
Fnu4HI GCNGC 2 cut(s) 1323, 1668
FokI GGATG 6 cut(s) 119, 524, 550, 656, 1235, 1273
Fsp4HI GCNGC 2 cut(s) 1323, 1668
FspBI CTAG 3 cut(s) 419, 705, 903
GluI GCNGC 2 cut(s) 1323, 1668
HaeIII GGCC 5 cut(s) 250, 550, 721, 1146, 1459
HapII CCGG 2 cut(s) 660, 876
HgaI GACGC 1 cut(s) 1635
Hin1II CATG 8 cut(s) 189, 242, 573, 614, 797, 1025, 1294, 1679
HincII GTYRAC 2 cut(s) 1164, 1594
HindII GTYRAC 2 cut(s) 1164, 1594
HindIII AAGCTT 2 cut(s) 950, 1373
HinfI GANTC 4 cut(s) 178, 358, 971, 1516
HpaII CCGG 2 cut(s) 660, 876
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 8 cut(s) 397, 616, 1102, 1164, 1214, 1300, 1594, 1618
Hpy188I TCNGA 8 cut(s) 54, 175, 284, 330, 351, 850, 1011, 1568
Hpy188III TCNNGA 6 cut(s) 119, 680, 762, 823, 968, 1416
Hpy8I GTNNAC 8 cut(s) 397, 616, 1102, 1164, 1214, 1300, 1594, 1618
HpyAV CCTTC 3 cut(s) 106, 820, 1501
HpyCH4III ACNGT 5 cut(s) 466, 589, 958, 1211, 1345
HpyCH4IV ACGT 5 cut(s) 315, 1304, 1398, 1590, 1700
HpyCH4V TGCA 9 cut(s) 273, 308, 397, 527, 793, 1039, 1322, 1667, 1687
HpyF10VI GCNNNNNNNGC 1 cut(s) 1635
HpyF3I CTNAG 5 cut(s) 102, 172, 626, 813, 1096
HpySE526I ACGT 5 cut(s) 315, 1304, 1398, 1590, 1700
Hsp92II CATG 8 cut(s) 189, 242, 573, 614, 797, 1025, 1294, 1679
LmnI GCTCC 3 cut(s) 1275, 1352, 1692
Lsp1109I GCAGC 2 cut(s) 1334, 1679
LweI GCATC 1 cut(s) 1309
MaeI CTAG 3 cut(s) 419, 705, 903
MaeII ACGT 5 cut(s) 315, 1304, 1398, 1590, 1700
MaeIII GTNAC 2 cut(s) 589, 1339
MflI RGATCY 5 cut(s) 115, 335, 845, 964, 1448
MhlI GDGCHC 2 cut(s) 399, 1697
MlyI GAGTC 1 cut(s) 980
MmeI TCCRAC 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 1476
MseI TTAA 5 cut(s) 545, 861, 909, 1260, 1653
MslI CAYNNNNRTG 3 cut(s) 568, 587, 911
MspA1I CMGCKG 2 cut(s) 505, 1325
MspCI CTTAAG 1 cut(s) 544
MspI CCGG 2 cut(s) 660, 876
MspR9I CCNGG 2 cut(s) 660, 877
Mva1269I GAATGC 1 cut(s) 1041
MwoI GCNNNNNNNGC 1 cut(s) 1635
NciI CCSGG 2 cut(s) 660, 877
NcoI CCATGG 1 cut(s) 185
NdeI CATATG 1 cut(s) 1069
NheI GCTAGC 1 cut(s) 704
NlaIII CATG 8 cut(s) 189, 242, 573, 614, 797, 1025, 1294, 1679
NlaIV GGNNCC 3 cut(s) 117, 722, 1277
NmuCI GTSAC 1 cut(s) 589
NspI RCATGY 3 cut(s) 614, 797, 1679
PceI AGGCCT 1 cut(s) 550
PciI ACATGT 2 cut(s) 610, 1675
PctI GAATGC 1 cut(s) 1041
PdmI GAANNNNTTC 1 cut(s) 1476
PfeI GAWTC 3 cut(s) 178, 358, 1516
PflMI CCANNNNNTGG 2 cut(s) 575, 1153
PkrI GCNGC 2 cut(s) 1324, 1669
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 1 cut(s) 979
PmaCI CACGTG 1 cut(s) 1701
PmlI CACGTG 1 cut(s) 1701
PpsI GAGTC 1 cut(s) 979
Ppu21I YACGTR 2 cut(s) 1399, 1701
PscI ACATGT 2 cut(s) 610, 1675
PspCI CACGTG 1 cut(s) 1701
PspN4I GGNNCC 3 cut(s) 117, 722, 1277
PspPI GGNCC 2 cut(s) 720, 1214
PsuI RGATCY 5 cut(s) 115, 335, 845, 964, 1448
PvuI CGATCG 1 cut(s) 57
PvuII CAGCTG 2 cut(s) 505, 1325
RsaI GTAC 5 cut(s) 314, 558, 1401, 1589, 1643
RsaNI GTAC 5 cut(s) 313, 557, 1400, 1588, 1642
RseI CAYNNNNRTG 3 cut(s) 568, 587, 911
SaqAI TTAA 5 cut(s) 545, 861, 909, 1260, 1653
SatI GCNGC 2 cut(s) 1323, 1668
Sau96I GGNCC 2 cut(s) 720, 1214
SchI GAGTC 1 cut(s) 980
ScrFI CCNGG 2 cut(s) 660, 877
SduI GDGCHC 2 cut(s) 399, 1697
SfaNI GCATC 1 cut(s) 1309
SfcI CTRYAG 1 cut(s) 780
SinI GGWCC 1 cut(s) 1214
SmiMI CAYNNNNRTG 3 cut(s) 568, 587, 911
SmlI CTYRAG 2 cut(s) 544, 1364
SmoI CTYRAG 2 cut(s) 544, 1364
SnaBI TACGTA 1 cut(s) 1399
SpeI ACTAGT 1 cut(s) 418
SseBI AGGCCT 1 cut(s) 550
SsiI CCGC 1 cut(s) 830
SspI AATATT 2 cut(s) 303, 480
SspMI CTAG 3 cut(s) 419, 705, 903
StuI AGGCCT 1 cut(s) 550
StyD4I CCNGG 2 cut(s) 658, 875
StyI CCWWGG 2 cut(s) 185, 533
TaaI ACNGT 5 cut(s) 466, 589, 958, 1211, 1345
TaiI ACGT 5 cut(s) 318, 1307, 1401, 1593, 1703
TaqI TCGA 5 cut(s) 24, 490, 999, 1658, 1680
TaqII GACCGA 1 cut(s) 47
TatI WGTACW 1 cut(s) 1641
TfiI GAWTC 3 cut(s) 178, 358, 1516
Tru1I TTAA 5 cut(s) 545, 861, 909, 1260, 1653
Tru9I TTAA 5 cut(s) 545, 861, 909, 1260, 1653
TscAI CASTG 5 cut(s) 594, 1056, 1201, 1216, 1694
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 2 cut(s) 1322, 1667
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 8 cut(s) 7, 67, 73, 423, 429, 744, 970, 1485
TspGWI ACGGA 2 cut(s) 1285, 1638
TspRI CASTG 5 cut(s) 594, 1056, 1201, 1216, 1694
Van91I CCANNNNNTGG 2 cut(s) 575, 1153
Vha464I CTTAAG 1 cut(s) 544
VneI GTGCAC 1 cut(s) 395
VpaK11BI GGWCC 1 cut(s) 1214
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 5 cut(s) 450, 943, 1041, 1082, 1475
XceI RCATGY 3 cut(s) 614, 797, 1679
XmiI GTMKAC 2 cut(s) 1299, 1617
XmnI GAANNNNTTC 1 cut(s) 1476
XspI CTAG 3 cut(s) 419, 705, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.