Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001241

Physical Location & Seq

Genomic Coordinates Forward (+)

17818011 .. 17819502

Gene Structure 1492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG198000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGGAACTTGAACCCTGAATGGAATGAGAATTTCAAGCTTACAGTCAAAGATCCAGAGTCCCAATTCATTCAGTTCAATGTTTTCGACTGGGATCAGATTGGGACGCATGACCCTTTGGGAATGCAAATTCTTCCACTGAAGTTGCTAACTCCATATGACACACAAGAATTTACGCTTGATTTAGTAAACAGCACAAACCCTTATGATCCTCAAAACAAGAAAAAAAGAGGCCAACTTATGGTGGAGTTGACATATAATCCTTTTATAGAAGAGAGTGGTAGTGGAATATATAACAGTGCACCTTTGGATGGAGATCAAGTGGTAGATGGAAAAAAGCTTGGAATTAAAAGCCAAGTTAGGAGCCGAAAGCCATCCATGTCCGTAGACATGTCTTCACAAATAGATGCAGCTGGTCTGCTTTTGGTTACAGTTCAAGGAGCAGAAGAACTTGAGAGCAAGCTTTACGATAACCCTAATCCTTACGTACTGGTTCGGTTTTCAGGAGAAAAGAGGAAAACCAAGATGATAAAGAGATCCCATCGGCCATATTGGAATGAAGAATTTCAGTTTGTGGTAGAAGAGGCGACCTTGAAGGAGAAGATTCGTTTTGAAGTAAAGAGTAAGAAAAGAAACCTTTTCGCTTATCGTTTCCGAAAAAAGGAATTGTTGGGGTACGTGGACATCAATTTTAGTGATGTGGTATACAATGGACGCATTAGAGGCAAGTACAATTTGATTAACTCGAAAAATGCAGTCATACATATCGAGTTGCAGTGGAGCACCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

263

Amino Acids

30.58

Weight (kDa)

8.97

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	2 - 56	9.7e-11	C2 domain
C2	PF00168	140 - 246	2e-17	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04220 AT5G04220 AT5G04220
fragaria_vesca	FvH4_6g16032 FvH4_7g19170 FvH4_7g19170 FvH4_7g19180 FvH4_7g19180 FvH4_7g19180
malus_domestica	MD01G1107100.v1.1 MD01G1107200.v1.1 MD07G1172800.v1.1 MD07G1173000.v1.1 MD12G1117500.v1.1
prunus_persica	Prupe.2G211900_v2.0.a1 Prupe.2G212000_v2.0.a1 Prupe.2G212000_v2.0.a1 Prupe.6G235800_v2.0.a1 Prupe.6G235800_v2.0.a1 Prupe.6G235800_v2.0.a1
pyrus_communis	pycom01g13380 pycom01g13390 pycom01g13400 pycom07g16760 pycom12g11620
rosa_chinensis	RchiOBHm_Chr1g0363021 RchiOBHm_Chr1g0363031 RchiOBHm_Chr3g0469781
rosa_laevigata	RLG00000015212 RLG00000024321 RLG00000027600 RLG00000027601
rosa_multiflora	Rmu_co8490065.1_g000001 Rmu_sc0004472.1_g000002 Rmu_sc0004472.1_g000003 Rmu_sc0024252.1_g000005 Rmu_sc0036506.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293530 Rroxscaffold_6G00411490
rosa_rugosa	Rorug01G0303600 Rorug01G0303700 Rorug01G0303800 Rorug01G0303900 Rorug03G0104400
rosa_samantha	Rh1AG312800 Rh1AG312900 Rh1CG292800 Rh1CG292900 Rh3AG153500 Rh3BG177600 Rh3CG168400 Rh3DG197900 Rh3DG198000
rosa_wichuraiana	Rw1G027710 Rw1G027720 Rw3G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	241
AccI	GTMKAC	2 cut(s)	387, 705
AclWI	GGATC	4 cut(s)	47, 102, 203, 531
AcoI	YGGCCR	1 cut(s)	545
AcsI	RAATTY	4 cut(s)	31, 129, 170, 563
AcuI	CTGAAG	1 cut(s)	161
AcvI	CACGTG	1 cut(s)	789
AdeI	CACNNNGTG	1 cut(s)	789
AfaI	GTAC	3 cut(s)	489, 677, 731
AfiI	CCNNNNNNNGG	3 cut(s)	241, 311, 661
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	6 cut(s)	13, 37, 79, 437, 595, 614
AluBI	AGCT	4 cut(s)	40, 340, 413, 463
AluI	AGCT	4 cut(s)	40, 340, 413, 463
Alw21I	GWGCWC	2 cut(s)	304, 785
Alw44I	GTGCAC	1 cut(s)	300
AlwI	GGATC	4 cut(s)	47, 102, 203, 531
AoxI	GGCC	2 cut(s)	232, 545
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	4 cut(s)	31, 129, 170, 563
Asp700I	GAANNNNTTC	1 cut(s)	564
BaeGI	GKGCMC	1 cut(s)	304
BbrPI	CACGTG	1 cut(s)	789
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	304, 785
BbvI	GCAGC	1 cut(s)	422
BccI	CCATC	4 cut(s)	305, 323, 382, 549
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	365
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	473
BsaAI	YACGTR	3 cut(s)	487, 679, 789
BsaBI	GATNNNNATC	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 311, 661
Bse1I	ACTGG	2 cut(s)	95, 495
Bse8I	GATNNNNATC	1 cut(s)	315
BseGI	GGATG	2 cut(s)	316, 374
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	3 cut(s)	241, 311, 661
BseNI	ACTGG	2 cut(s)	95, 495
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	422
BshFI	GGCC	2 cut(s)	234, 547
BsiHKAI	GWGCWC	2 cut(s)	304, 785
BslFI	GGGAC	2 cut(s)	46, 118
BslI	CCNNNNNNNGG	3 cut(s)	241, 311, 661
BsmFI	GGGAC	2 cut(s)	46, 118
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	234, 547
Bsp1286I	GDGCHC	2 cut(s)	304, 785
Bsp143I	GATC	5 cut(s)	52, 94, 208, 316, 536
BspANI	GGCC	2 cut(s)	234, 547
BspLI	GGNNCC	1 cut(s)	365
BspPI	GGATC	4 cut(s)	47, 102, 203, 531
BsrI	ACTGG	2 cut(s)	95, 495
BssMI	GATC	5 cut(s)	52, 94, 208, 316, 536
BssNAI	GTATAC	1 cut(s)	706
Bst1107I	GTATAC	1 cut(s)	706
Bst4CI	ACNGT	3 cut(s)	46, 299, 433
Bst6I	CTCTTC	2 cut(s)	267, 576
BstBAI	YACGTR	3 cut(s)	487, 679, 789
BstC8I	GCNNGC	1 cut(s)	461
BstF5I	GGATG	2 cut(s)	316, 374
BstKTI	GATC	5 cut(s)	55, 97, 211, 319, 539
BstMBI	GATC	5 cut(s)	52, 94, 208, 316, 536
BstMWI	GCNNNNNNNGC	1 cut(s)	723
BstNSI	RCATGY	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	304
BstSNI	TACGTA	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	422
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	2 cut(s)	52, 536
BstYI	RGATCY	2 cut(s)	52, 536
BstZ17I	GTATAC	1 cut(s)	706
BsuRI	GGCC	2 cut(s)	234, 547
BtsCI	GGATG	2 cut(s)	316, 374
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	3 cut(s)	137, 304, 782
Cac8I	GCNNGC	1 cut(s)	461
CseI	GACGC	2 cut(s)	115, 723
Csp6I	GTAC	3 cut(s)	488, 676, 730
CspCI	CAANNNNNGTGG	2 cut(s)	126, 161
CviAII	CATG	3 cut(s)	110, 379, 391
CviJI	RGCY	9 cut(s)	40, 234, 340, 354, 366, 373, 413, 463, 547
CviKI_1	RGCY	9 cut(s)	40, 234, 340, 354, 366, 373, 413, 463, 547
CviQI	GTAC	3 cut(s)	488, 676, 730
DpnI	GATC	5 cut(s)	54, 96, 210, 318, 538
DpnII	GATC	5 cut(s)	52, 94, 208, 316, 536
DraIII	CACNNNGTG	1 cut(s)	789
EaeI	YGGCCR	1 cut(s)	545
Eam1104I	CTCTTC	2 cut(s)	267, 576
EarI	CTCTTC	2 cut(s)	267, 576
Eco105I	TACGTA	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	161
Eco72I	CACGTG	1 cut(s)	789
FaeI	CATG	3 cut(s)	113, 382, 394
FaqI	GGGAC	2 cut(s)	46, 118
FatI	CATG	3 cut(s)	109, 378, 390
FauNDI	CATATG	1 cut(s)	157
FblI	GTMKAC	2 cut(s)	387, 705
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	2 cut(s)	323, 361
Fsp4HI	GCNGC	1 cut(s)	411
GluI	GCNGC	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	234, 547
HgaI	GACGC	2 cut(s)	115, 723
Hin1II	CATG	3 cut(s)	113, 382, 394
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HindIII	AAGCTT	3 cut(s)	38, 338, 461
HinfI	GANTC	2 cut(s)	59, 604
Hpy166II	GTNNAC	6 cut(s)	190, 252, 302, 388, 682, 706
Hpy188I	TCNGA	2 cut(s)	99, 656
Hpy188III	TCNNGA	2 cut(s)	56, 504
Hpy8I	GTNNAC	6 cut(s)	190, 252, 302, 388, 682, 706
HpyAV	CCTTC	1 cut(s)	589
HpyCH4III	ACNGT	3 cut(s)	46, 299, 433
HpyCH4IV	ACGT	3 cut(s)	486, 678, 788
HpyCH4V	TGCA	5 cut(s)	127, 302, 410, 755, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	723
HpySE526I	ACGT	3 cut(s)	486, 678, 788
Hsp92II	CATG	3 cut(s)	113, 382, 394
Kzo9I	GATC	5 cut(s)	52, 94, 208, 316, 536
LmnI	GCTCC	3 cut(s)	363, 440, 780
LpnPI	CCDG	6 cut(s)	30, 69, 76, 399, 476, 489
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	1 cut(s)	397
MaeII	ACGT	3 cut(s)	486, 678, 788
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	5 cut(s)	54, 96, 210, 318, 538
MboI	GATC	5 cut(s)	52, 94, 208, 316, 536
MboII	GAAGA	7 cut(s)	125, 284, 387, 458, 572, 593, 613
MflI	RGATCY	2 cut(s)	52, 536
MhlI	GDGCHC	2 cut(s)	304, 785
MluCI	AATT	9 cut(s)	31, 65, 129, 170, 345, 563, 665, 688, 733
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	5 cut(s)	222, 224, 507, 577, 716
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	2 cut(s)	348, 741
MspA1I	CMGCKG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	723
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	5 cut(s)	52, 94, 208, 316, 536
NlaIII	CATG	3 cut(s)	113, 382, 394
NlaIV	GGNNCC	1 cut(s)	365
NspI	RCATGY	1 cut(s)	394
PciI	ACATGT	1 cut(s)	390
PctI	GAATGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	1 cut(s)	604
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	1 cut(s)	67
PmaCI	CACGTG	1 cut(s)	789
PmlI	CACGTG	1 cut(s)	789
PpsI	GAGTC	1 cut(s)	67
Ppu21I	YACGTR	3 cut(s)	487, 679, 789
PscI	ACATGT	1 cut(s)	390
PspCI	CACGTG	1 cut(s)	789
PspN4I	GGNNCC	1 cut(s)	365
PsuI	RGATCY	2 cut(s)	52, 536
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	3 cut(s)	489, 677, 731
RsaNI	GTAC	3 cut(s)	488, 676, 730
SaqAI	TTAA	2 cut(s)	348, 741
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	5 cut(s)	52, 94, 208, 316, 536
SchI	GAGTC	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	304, 785
SfaNI	GCATC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SnaBI	TACGTA	1 cut(s)	487
Sse9I	AATT	9 cut(s)	31, 65, 129, 170, 345, 563, 665, 688, 733
TaaI	ACNGT	3 cut(s)	46, 299, 433
TaiI	ACGT	3 cut(s)	489, 681, 791
TaqI	TCGA	3 cut(s)	87, 746, 768
TasI	AATT	9 cut(s)	31, 65, 129, 170, 345, 563, 665, 688, 733
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	2 cut(s)	348, 741
Tru9I	TTAA	2 cut(s)	348, 741
TscAI	CASTG	3 cut(s)	144, 304, 782
TseI	GCWGC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	58, 573
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	3 cut(s)	144, 304, 782
Van91I	CCANNNNNTGG	1 cut(s)	241
VneI	GTGCAC	1 cut(s)	300
XapI	RAATTY	4 cut(s)	31, 129, 170, 563
XceI	RCATGY	1 cut(s)	394
XmiI	GTMKAC	2 cut(s)	387, 705
XmnI	GAANNNNTTC	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.