Rorug03G0104400

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001241
Physical Location & Seq
Forward (+)
8275234 .. 8276430
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0104400.1

Sequence Viewer

Length: 651 bp
ATGCAACAAGCAAGCGCACCACCATCCGGCGCTAATCTGAGCGCAAGCGCAGTTCCGGTAGCATACGCTAATCCCACTGTTGCGATCATCAGCCCTAATTTCTGCACTCCCTACCCTGTTGATCTTGGTATTGTCCGAAAAGTTCTAACCATAACCGATGGCAACTTTGTAGTCACGGATGTCAATGGCAACACTGTTTTCAAAGTGAAAGGAGCGCACTTAAGCCTACGTGACCGTCGAGTTTTACTTGACGCTGCTGGCTACCCCATTGTAACTTTCCGAAAGAAGTTGAGGTCGGTACATGAAAGATGGCAAGTTTTCAGGGGAGATAGCACAGAATCGAGTAACCTGGTATTTAGTGTTAAGCAATCTTCAATGATTCAGATGAAGACCAAATTGGATGTGTTCTTAGCAAATAACACAGGAGAGTATGCACCTGACTTCCAGGTTAAAGGAAGTTGGTTTGAAAGATCTTGCGTTATACATGCTGGCAACTCCTCCACCATTATTGCCCAAATGCATAAGAAGCACACAGTTTCAAGCGTGTTGTTTGGGAAGGACAATTTCAGTGTCACAGTATATCCCGGGGTTGACTACGCTTTCATCGTTGCGCTTATTGTCATCCTTGATGAGATCAATGCTGACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

216

Amino Acids

23.6

Weight (kDa)

9.08

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 41 - 210 1.8e-53 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 26
AflII CTTAAG 1 cut(s) 220
AgsI TTSAA 4 cut(s) 202, 375, 467, 540
AjnI CCWGG 2 cut(s) 348, 444
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
Ama87I CYCGRG 1 cut(s) 584
ApeKI GCWGC 1 cut(s) 254
AspLEI GCGC 6 cut(s) 17, 32, 44, 50, 217, 613
AsuC2I CCSGG 2 cut(s) 585, 586
AvaI CYCGRG 1 cut(s) 584
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 241
BccI CCATC 3 cut(s) 31, 152, 303
BciT130I CCWGG 2 cut(s) 350, 446
BcnI CCSGG 2 cut(s) 585, 586
BfoI RGCGCY 1 cut(s) 33
BfrI CTTAAG 1 cut(s) 220
BglII AGATCT 1 cut(s) 470
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 4 cut(s) 350, 446, 585, 586
BmeT110I CYCGRG 1 cut(s) 584
BmrFI CCNGG 4 cut(s) 350, 446, 585, 586
BpiI GAAGAC 1 cut(s) 395
BpuMI CCSGG 2 cut(s) 585, 586
BsaAI YACGTR 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 584, 585
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseBI CCWGG 2 cut(s) 350, 446
BseDI CCNNGG 2 cut(s) 584, 585
BseGI GGATG 4 cut(s) 23, 184, 406, 621
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 487
BseXI GCAGC 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 3 cut(s) 27, 56, 585
BslI CCNNNNNNNGG 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 584
Bsp143I GATC 4 cut(s) 84, 121, 470, 633
BspCNI CTCAG 1 cut(s) 30
BspTI CTTAAG 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 584, 585
BssMI GATC 4 cut(s) 84, 121, 470, 633
Bst2UI CCWGG 2 cut(s) 350, 446
Bst4CI ACNGT 5 cut(s) 79, 196, 236, 535, 577
BstAFI CTTAAG 1 cut(s) 220
BstBAI YACGTR 1 cut(s) 230
BstC8I GCNNGC 4 cut(s) 13, 46, 259, 490
BstDEI CTNAG 2 cut(s) 38, 409
BstF5I GGATG 4 cut(s) 23, 184, 406, 621
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 6 cut(s) 17, 32, 44, 50, 217, 613
BstKTI GATC 4 cut(s) 87, 124, 473, 636
BstMBI GATC 4 cut(s) 84, 121, 470, 633
BstMWI GCNNNNNNNGC 1 cut(s) 526
BstNI CCWGG 2 cut(s) 350, 446
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 4 cut(s) 348, 444, 583, 584
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 470
BstYI RGATCY 1 cut(s) 470
BtsCI GGATG 4 cut(s) 23, 184, 406, 621
BtsIMutI CAGTG 3 cut(s) 75, 192, 574
Cac8I GCNNGC 4 cut(s) 13, 46, 259, 490
CfoI GCGC 6 cut(s) 17, 32, 44, 50, 217, 613
Cfr9I CCCGGG 1 cut(s) 584
CseI GACGC 1 cut(s) 260
CsiI ACCWGGT 1 cut(s) 348
Csp6I GTAC 1 cut(s) 299
CspCI CAANNNNNGTGG 2 cut(s) 490, 525
CviAII CATG 2 cut(s) 302, 485
CviJI RGCY 3 cut(s) 93, 225, 261
CviKI_1 RGCY 3 cut(s) 93, 225, 261
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 2 cut(s) 38, 409
DpnI GATC 4 cut(s) 86, 123, 472, 635
DpnII GATC 4 cut(s) 84, 121, 470, 633
Eco88I CYCGRG 1 cut(s) 584
EcoRII CCWGG 2 cut(s) 348, 444
EcoT22I ATGCAT 1 cut(s) 522
FaeI CATG 2 cut(s) 305, 488
FaiI YATR 8 cut(s) 64, 152, 303, 432, 482, 486, 522, 580
FatI CATG 2 cut(s) 301, 484
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 4 cut(s) 10, 191, 413, 608
Fsp4HI GCNGC 1 cut(s) 255
GlaI GCGC 6 cut(s) 16, 31, 43, 49, 216, 612
GluI GCNGC 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 33
HapII CCGG 3 cut(s) 27, 56, 585
HgaI GACGC 1 cut(s) 260
HhaI GCGC 6 cut(s) 17, 32, 44, 50, 217, 613
Hin1II CATG 2 cut(s) 305, 488
Hin6I GCGC 6 cut(s) 15, 30, 42, 48, 215, 611
HinP1I GCGC 6 cut(s) 15, 30, 42, 48, 215, 611
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HinfI GANTC 3 cut(s) 338, 379, 644
HpaII CCGG 3 cut(s) 27, 56, 585
Hpy166II GTNNAC 1 cut(s) 592
Hpy188I TCNGA 4 cut(s) 39, 137, 281, 384
Hpy188III TCNNGA 1 cut(s) 648
Hpy8I GTNNAC 1 cut(s) 592
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 550
HpyCH4III ACNGT 5 cut(s) 79, 196, 236, 535, 577
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 4, 105, 434, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 526
HpyF3I CTNAG 2 cut(s) 38, 409
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 2 cut(s) 305, 488
HspAI GCGC 6 cut(s) 15, 30, 42, 48, 215, 611
Kzo9I GATC 4 cut(s) 84, 121, 470, 633
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 1 cut(s) 241
MabI ACCWGGT 1 cut(s) 348
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 5 cut(s) 172, 230, 271, 344, 571
MalI GATC 4 cut(s) 86, 123, 472, 635
MboI GATC 4 cut(s) 84, 121, 470, 633
MboII GAAGA 2 cut(s) 363, 400
MflI RGATCY 1 cut(s) 470
MluCI AATT 3 cut(s) 97, 395, 562
MlyI GAGTC 1 cut(s) 638
MnlI CCTC 2 cut(s) 285, 508
Mph1103I ATGCAT 1 cut(s) 522
MseI TTAA 3 cut(s) 221, 363, 450
MspCI CTTAAG 1 cut(s) 220
MspI CCGG 3 cut(s) 27, 56, 585
MspR9I CCNGG 4 cut(s) 350, 446, 585, 586
MvaI CCWGG 2 cut(s) 350, 446
MwoI GCNNNNNNNGC 1 cut(s) 526
NciI CCSGG 2 cut(s) 585, 586
NdeII GATC 4 cut(s) 84, 121, 470, 633
NlaIII CATG 2 cut(s) 305, 488
NmuCI GTSAC 3 cut(s) 172, 230, 571
NsiI ATGCAT 1 cut(s) 522
NspI RCATGY 1 cut(s) 488
PcsI WCGNNNNNNNCGW 2 cut(s) 235, 603
PfeI GAWTC 2 cut(s) 338, 379
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 638
Ppu21I YACGTR 1 cut(s) 230
Psp6I CCWGG 2 cut(s) 348, 444
PspGI CCWGG 2 cut(s) 348, 444
PsuI RGATCY 1 cut(s) 470
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
SaqAI TTAA 3 cut(s) 221, 363, 450
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 4 cut(s) 84, 121, 470, 633
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 4 cut(s) 350, 446, 585, 586
SetI ASST 5 cut(s) 232, 296, 351, 439, 450
SexAI ACCWGGT 1 cut(s) 348
SmaI CCCGGG 1 cut(s) 586
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 3 cut(s) 97, 395, 562
StyD4I CCNGG 4 cut(s) 348, 444, 583, 584
TaaI ACNGT 5 cut(s) 79, 196, 236, 535, 577
TaiI ACGT 1 cut(s) 232
TaqI TCGA 2 cut(s) 238, 341
TasI AATT 3 cut(s) 97, 395, 562
TfiI GAWTC 2 cut(s) 338, 379
Tru1I TTAA 3 cut(s) 221, 363, 450
Tru9I TTAA 3 cut(s) 221, 363, 450
TscAI CASTG 3 cut(s) 82, 199, 574
TseFI GTSAC 3 cut(s) 172, 230, 571
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 3 cut(s) 172, 230, 571
TspDTI ATGAA 3 cut(s) 318, 401, 592
TspGWI ACGGA 1 cut(s) 191
TspMI CCCGGG 1 cut(s) 584
TspRI CASTG 3 cut(s) 82, 199, 574
Vha464I CTTAAG 1 cut(s) 220
XceI RCATGY 1 cut(s) 488
XmaI CCCGGG 1 cut(s) 584
Zsp2I ATGCAT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.