RLG00000027601

Synaptotagmin-3-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
13024277 .. 13027461
3185 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027601

Sequence Viewer

Length: 1683 bp
ATGGGATTTCTGAGCAGCTTGTTGGAAATCCTTGGACTTGGAATTGGCATTCCTCTTGGACTCTTGGTGGGGTTTTACTATTTTATATATTCGAAGCCCAAAGAAGTAGAGGATCCAGTAATCAAGCCACTTCATGAGTTAGATAAAACTGCTTTGCAGGACCTTCTTCCAGAAATTCCTTTGTGGGTGAAGAACCCAAATTATCATACGGTAGACTGGATGAACAAATTCATTTCAGATTTATGGCCTTACCTTGATAAGGAAATTACGGGTATGATAAGAAGCACAGCTGAACCTATATTTGCCGAGTACATTGGGAAGTTTTGGATTAAAACAATTGCATTTGAGAGACTAAGCATGGGAACCGTTCCTCCTGTTATTAATGGTCTTAAAGTGTATGAGACTAATGAGAAGGAATTGATCATGGAGCCATCAGTAAAATGGGCTGGCAATCCCAACATAGTTGTAGTCATAAAAATTTTGTCTATACCAATTACAGTGCAGTTAGAGGATCTACAAATATTTTTGGCCCCAAGGATAACTATGACACCTCTTGTGCCTGCCTTCCCATGTTTTGCAAACATAGTGGTGTCATTGATGGAGAAGCCTCATGTGGATTTTGGAATGAGCATATTGGGCGGTGATATCATGTCTATACCTGGCCTCTACCATTTTGTTCAGGAAACTATTAAAAAGCAAGTTGCAGACCTCTACCTCTGGCCTCAAACTCTTGAAATACCTATTCTTGATGTTTCAACAGTGGCTGTAAAGAAGCCAGTGGGAATACTACATGTAAATGTTGTTCAAGCGGTTAAACTCTTAAAGAAGGATATCCTAGGATCATCTGATCCCTATGTCAAACTCAGCTTGACTGCAGATGGGTTACCAGCTAAGAAAACAAGTATCAAGAAAAAAAATTTGAACCCCGAGTGGAATGAGAAGTTCAAGCTTATTGTGAAGGATCCCAATTCCCAGTTTCTTCAGTTACAAGTCTTTGATTGGGATAAGGTTGGTGCACATGATAGGATAGGCAGGCAGTCAGTTCCTCTCAAAACGCTTACACCTTTCGAGATGAAGGAGTTCAAACTTGATTTGCTCAGGGACAGTTGTAAGGATACTCCTTGTTTTCAAAGCAAGAAGCAAAGAGGGCAACTGGTGGTTGAGCTGAAGTTTGTGCCTTTTAAAGAGGAAAGGGGAAGGTTTAGCGGACCTTTAAATTTTTTGGAGCCAAAGGAAAATGGAACTACTAACGAAAATGGAATCAACGAAGTGTCATTGTCATCGGATGATGGAAGTAATGGGAGTACTCTAGGTGGAGCTGGTTTACTGTCAGTTACGATCCAAGGAGCTGAGGATGTGGAAGGCAAATGCCACAACAATCCTTATGCTATGATCCTTTTTAGAGGAGAAATTAAGAAAACAATGATGATTCGAAAAACTCGTGATCCAAGATGGGATGAAGAGTTCCAGTTCATGCTCGAGGAGCCTCCTTTACATGAGATAATTCACATTGAGGTCCTCAGCAAGCGAACAGGAATTGGTTTTCGATTTAAGGAGTCGTTGGGATATGTGGAGATTACTCTTGCAGATGTTGTACACAACGGCCGGATCAACCAGAAATATCACTTGATCGATTCGAAGAATGGAGTTATACATGTTGAGATCAGCTGGAAGACGATATGA

Protein Analysis

561

Amino Acids

63.35

Weight (kDa)

6.49

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 71 - 248 9.1e-16 Synaptotagmin-like mitochondrial-lipid-binding domain
SMP_MUG190-like PF25669 161 - 247 4.9e-08 MUG190-like SMP domain
C2 PF00168 261 - 355 1.1e-26 C2 domain
C2 PF00168 441 - 543 1.1e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AciI CCGC 3 cut(s) 639, 809, 1206
AcoI YGGCCR 1 cut(s) 1603
AcsI RAATTY 5 cut(s) 174, 227, 477, 916, 1216
AcuI CTGAAG 2 cut(s) 965, 1187
AfaI GTAC 3 cut(s) 311, 1306, 1596
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 2 cut(s) 790, 1654
AgsI TTSAA 7 cut(s) 734, 756, 806, 922, 946, 1084, 1130
AjnI CCWGG 1 cut(s) 658
AloI GAACNNNNNNTCC 4 cut(s) 355, 387, 1448, 1480
AluBI AGCT 9 cut(s) 18, 290, 867, 890, 949, 1165, 1319, 1349, 1668
AluI AGCT 9 cut(s) 18, 290, 867, 890, 949, 1165, 1319, 1349, 1668
Alw21I GWGCWC 1 cut(s) 1018
Alw26I GTCTC 2 cut(s) 343, 395
Alw44I GTGCAC 1 cut(s) 1014
AlwNI CAGNNNCTG 1 cut(s) 764
Ama87I CYCGRG 2 cut(s) 926, 1478
AoxI GGCC 5 cut(s) 245, 528, 661, 719, 1603
ApaLI GTGCAC 1 cut(s) 1014
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 5 cut(s) 174, 227, 477, 916, 1216
AseI ATTAAT 1 cut(s) 381
Asp700I GAANNNNTTC 2 cut(s) 227, 1079
AspA2I CCTAGG 1 cut(s) 835
AspS9I GGNCC 4 cut(s) 160, 529, 1208, 1516
AsuHPI GGTGA 2 cut(s) 199, 653
AsuII TTCGAA 3 cut(s) 92, 1432, 1637
AvaI CYCGRG 2 cut(s) 926, 1478
AvaII GGWCC 3 cut(s) 160, 1208, 1516
AvrII CCTAGG 1 cut(s) 835
BaeGI GKGCMC 1 cut(s) 1018
BamHI GGATCC 2 cut(s) 112, 961
BauI CACGAG 1 cut(s) 1440
BbsI GAAGAC 1 cut(s) 1679
Bbv12I GWGCWC 1 cut(s) 1018
BbvCI CCTCAGC 2 cut(s) 1350, 1520
BbvI GCAGC 1 cut(s) 27
BccI CCATC 5 cut(s) 439, 592, 872, 1283, 1446
BceAI ACGGC 1 cut(s) 1618
BciT130I CCWGG 1 cut(s) 660
BciVI GTATCC 1 cut(s) 1108
BclI TGATCA 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 343, 395
BfaI CTAG 2 cut(s) 836, 1310
BfmI CTRYAG 1 cut(s) 873
BfuI GTATCC 1 cut(s) 1108
BisI GCNGC 1 cut(s) 16
BlnI CCTAGG 1 cut(s) 835
BlsI GCNGC 1 cut(s) 17
BmcAI AGTACT 1 cut(s) 1306
Bme1390I CCNGG 1 cut(s) 660
Bme18I GGWCC 3 cut(s) 160, 1208, 1516
BmeT110I CYCGRG 2 cut(s) 926, 1478
BmgT120I GGNCC 4 cut(s) 160, 529, 1208, 1516
BmiI GGNNCC 7 cut(s) 114, 364, 429, 531, 963, 1227, 1485
BmrFI CCNGG 1 cut(s) 660
BmrI ACTGGG 1 cut(s) 967
BmuI ACTGGG 1 cut(s) 967
BpiI GAAGAC 1 cut(s) 1679
Bpu10I CCTNAGC 3 cut(s) 1097, 1350, 1520
Bpu14I TTCGAA 3 cut(s) 92, 1432, 1637
Bsa29I ATCGAT 1 cut(s) 1632
BsaJI CCNNGG 4 cut(s) 31, 533, 835, 1342
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 6 cut(s) 116, 221, 776, 973, 1158, 1468
BseBI CCWGG 1 cut(s) 660
BseCI ATCGAT 1 cut(s) 1632
BseDI CCNNGG 4 cut(s) 31, 533, 835, 1342
BseGI GGATG 4 cut(s) 225, 1291, 1360, 1462
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 4 cut(s) 877, 1111, 1341, 1534
BseNI ACTGG 6 cut(s) 116, 221, 776, 973, 1158, 1468
BseRI GAGGAG 2 cut(s) 1419, 1496
BseSI GKGCMC 1 cut(s) 1018
BseX3I CGGCCG 1 cut(s) 1603
BseXI GCAGC 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 521
Bsh1285I CGRYCG 1 cut(s) 1606
BshFI GGCC 5 cut(s) 247, 530, 663, 721, 1605
BshVI ATCGAT 1 cut(s) 1632
BsiEI CGRYCG 1 cut(s) 1606
BsiHKAI GWGCWC 1 cut(s) 1018
BsiHKCI CYCGRG 2 cut(s) 926, 1478
BsiSI CCGG 1 cut(s) 1606
BslFI GGGAC 1 cut(s) 1115
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 343, 395
BsmFI GGGAC 1 cut(s) 1115
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 5 cut(s) 247, 530, 663, 721, 1605
BsoBI CYCGRG 2 cut(s) 926, 1478
Bsp119I TTCGAA 3 cut(s) 92, 1432, 1637
Bsp1286I GDGCHC 1 cut(s) 1018
Bsp1407I TGTACA 1 cut(s) 1594
BspACI CCGC 3 cut(s) 639, 809, 1206
BspANI GGCC 5 cut(s) 247, 530, 663, 721, 1605
BspCNI CTCAG 4 cut(s) 876, 1110, 1342, 1533
BspDI ATCGAT 1 cut(s) 1632
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 7 cut(s) 114, 364, 429, 531, 963, 1227, 1485
BspMAI CTGCAG 1 cut(s) 877
BspT104I TTCGAA 3 cut(s) 92, 1432, 1637
BsrGI TGTACA 1 cut(s) 1594
BsrI ACTGG 6 cut(s) 116, 221, 776, 973, 1158, 1468
BssECI CCNNGG 4 cut(s) 31, 533, 835, 1342
BssSI CACGAG 1 cut(s) 1440
BssT1I CCWWGG 4 cut(s) 31, 533, 835, 1342
Bst2BI CACGAG 1 cut(s) 1440
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 6 cut(s) 211, 367, 499, 760, 1106, 1329
Bst6I CTCTTC 1 cut(s) 1455
BstAUI TGTACA 1 cut(s) 1594
BstBI TTCGAA 3 cut(s) 92, 1432, 1637
BstC8I GCNNGC 4 cut(s) 448, 561, 1034, 1526
BstDEI CTNAG 7 cut(s) 11, 353, 863, 891, 1097, 1350, 1520
BstEII GGTNACC 1 cut(s) 882
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 4 cut(s) 225, 1291, 1360, 1462
BstMAI GTCTC 2 cut(s) 343, 395
BstMCI CGRYCG 1 cut(s) 1606
BstMWI GCNNNNNNNGC 3 cut(s) 636, 1147, 1483
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 2 cut(s) 794, 1658
BstPI GGTNACC 1 cut(s) 882
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 1 cut(s) 873
BstSLI GKGCMC 1 cut(s) 1018
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 1679
BstX2I RGATCY 3 cut(s) 112, 511, 961
BstYI RGATCY 3 cut(s) 112, 511, 961
BstZI CGGCCG 1 cut(s) 1603
Bsu15I ATCGAT 1 cut(s) 1632
BsuI GTATCC 1 cut(s) 1108
BsuRI GGCC 5 cut(s) 247, 530, 663, 721, 1605
BsuTUI ATCGAT 1 cut(s) 1632
BtsCI GGATG 4 cut(s) 225, 1291, 1360, 1462
BtsIMutI CAGTG 3 cut(s) 504, 765, 783
Cac8I GCNNGC 4 cut(s) 448, 561, 1034, 1526
CaiI CAGNNNCTG 1 cut(s) 764
CciI TCATGA 1 cut(s) 133
Cfr13I GGNCC 4 cut(s) 160, 529, 1208, 1516
ClaI ATCGAT 1 cut(s) 1632
Csp6I GTAC 3 cut(s) 310, 1305, 1595
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviQI GTAC 3 cut(s) 310, 1305, 1595
DdeI CTNAG 7 cut(s) 11, 353, 863, 891, 1097, 1350, 1520
DraI TTTAAA 2 cut(s) 1183, 1215
EaeI YGGCCR 1 cut(s) 1603
EagI CGGCCG 1 cut(s) 1603
Eam1104I CTCTTC 1 cut(s) 1455
EarI CTCTTC 1 cut(s) 1455
EclXI CGGCCG 1 cut(s) 1603
Eco130I CCWWGG 4 cut(s) 31, 533, 835, 1342
Eco32I GATATC 2 cut(s) 646, 832
Eco47I GGWCC 3 cut(s) 160, 1208, 1516
Eco52I CGGCCG 1 cut(s) 1603
Eco57I CTGAAG 2 cut(s) 965, 1187
Eco88I CYCGRG 2 cut(s) 926, 1478
Eco91I GGTNACC 1 cut(s) 882
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 2 cut(s) 160, 1516
EcoO65I GGTNACC 1 cut(s) 882
EcoRII CCWGG 1 cut(s) 658
EcoRV GATATC 2 cut(s) 646, 832
EcoT14I CCWWGG 4 cut(s) 31, 533, 835, 1342
ErhI CCWWGG 4 cut(s) 31, 533, 835, 1342
FaqI GGGAC 1 cut(s) 1115
FbaI TGATCA 1 cut(s) 420
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 4 cut(s) 232, 1298, 1367, 1469
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 2 cut(s) 836, 1310
GluI GCNGC 1 cut(s) 16
HaeIII GGCC 5 cut(s) 247, 530, 663, 721, 1605
HapII CCGG 1 cut(s) 1606
HindIII AAGCTT 1 cut(s) 947
HinfI GANTC 5 cut(s) 60, 1260, 1429, 1556, 1634
HpaII CCGG 1 cut(s) 1606
HphI GGTGA 2 cut(s) 199, 653
Hpy166II GTNNAC 4 cut(s) 214, 1016, 1325, 1597
Hpy188I TCNGA 4 cut(s) 12, 238, 847, 1285
Hpy188III TCNNGA 8 cut(s) 134, 170, 680, 731, 746, 907, 1069, 1442
Hpy8I GTNNAC 4 cut(s) 214, 1016, 1325, 1597
HpyAV CCTTC 8 cut(s) 173, 406, 574, 820, 952, 1069, 1191, 1355
HpyCH4III ACNGT 6 cut(s) 211, 367, 499, 760, 1106, 1329
HpyCH4V TGCA 8 cut(s) 157, 341, 502, 578, 704, 875, 1016, 1586
HpyF10VI GCNNNNNNNGC 3 cut(s) 636, 1147, 1483
HpyF3I CTNAG 7 cut(s) 11, 353, 863, 891, 1097, 1350, 1520
Ksp22I TGATCA 1 cut(s) 420
LmnI GCTCC 5 cut(s) 427, 1225, 1316, 1346, 1483
Lsp1109I GCAGC 1 cut(s) 27
MaeI CTAG 2 cut(s) 836, 1310
MaeIII GTNAC 3 cut(s) 882, 984, 1333
MboII GAAGA 5 cut(s) 158, 202, 971, 1472, 1651
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 3 cut(s) 112, 511, 961
MhlI GDGCHC 1 cut(s) 1018
MlyI GAGTC 2 cut(s) 54, 1565
MroXI GAANNNNTTC 2 cut(s) 227, 1079
MslI CAYNNNNRTG 2 cut(s) 587, 795
MspA1I CMGCKG 2 cut(s) 290, 1668
MspI CCGG 1 cut(s) 1606
MspR9I CCNGG 1 cut(s) 660
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 48
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 3 cut(s) 636, 1147, 1483
NlaIV GGNNCC 7 cut(s) 114, 364, 429, 531, 963, 1227, 1485
NmeAIII GCCGAG 1 cut(s) 331
NspI RCATGY 2 cut(s) 794, 1658
NspV TTCGAA 3 cut(s) 92, 1432, 1637
PaeR7I CTCGAG 1 cut(s) 1478
PagI TCATGA 1 cut(s) 133
PciI ACATGT 2 cut(s) 790, 1654
PcsI WCGNNNNNNNCGW 1 cut(s) 1438
PctI GAATGC 1 cut(s) 48
PdmI GAANNNNTTC 2 cut(s) 227, 1079
PfeI GAWTC 3 cut(s) 1260, 1429, 1634
PkrI GCNGC 1 cut(s) 17
PleI GAGTC 2 cut(s) 54, 1564
PpsI GAGTC 2 cut(s) 54, 1564
PpuMI RGGWCCY 2 cut(s) 160, 1516
PscI ACATGT 2 cut(s) 790, 1654
PshBI ATTAAT 1 cut(s) 381
Psp5II RGGWCCY 2 cut(s) 160, 1516
Psp6I CCWGG 1 cut(s) 658
PspEI GGTNACC 1 cut(s) 882
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 7 cut(s) 114, 364, 429, 531, 963, 1227, 1485
PspPI GGNCC 4 cut(s) 160, 529, 1208, 1516
PspPPI RGGWCCY 2 cut(s) 160, 1516
PspXI VCTCGAGB 1 cut(s) 1478
PsrI GAACNNNNNNTAC 2 cut(s) 786, 818
PstI CTGCAG 1 cut(s) 877
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 3 cut(s) 112, 511, 961
PvuII CAGCTG 2 cut(s) 290, 1668
RsaI GTAC 3 cut(s) 311, 1306, 1596
RsaNI GTAC 3 cut(s) 310, 1305, 1595
RseI CAYNNNNRTG 2 cut(s) 587, 795
SatI GCNGC 1 cut(s) 16
Sau96I GGNCC 4 cut(s) 160, 529, 1208, 1516
ScaI AGTACT 1 cut(s) 1306
SchI GAGTC 2 cut(s) 54, 1565
ScrFI CCNGG 1 cut(s) 660
SduI GDGCHC 1 cut(s) 1018
SfcI CTRYAG 1 cut(s) 873
Sfr274I CTCGAG 1 cut(s) 1478
SfuI TTCGAA 3 cut(s) 92, 1432, 1637
SinI GGWCC 3 cut(s) 160, 1208, 1516
SlaI CTCGAG 1 cut(s) 1478
SmiMI CAYNNNNRTG 2 cut(s) 587, 795
SmlI CTYRAG 1 cut(s) 1478
SmoI CTYRAG 1 cut(s) 1478
SsiI CCGC 3 cut(s) 639, 809, 1206
SspI AATATT 1 cut(s) 522
SspMI CTAG 2 cut(s) 836, 1310
StyD4I CCNGG 1 cut(s) 658
StyI CCWWGG 4 cut(s) 31, 533, 835, 1342
TaaI ACNGT 6 cut(s) 211, 367, 499, 760, 1106, 1329
TaqI TCGA 7 cut(s) 92, 1068, 1432, 1479, 1546, 1632, 1637
TatI WGTACW 3 cut(s) 309, 1304, 1594
TfiI GAWTC 3 cut(s) 1260, 1429, 1634
TscAI CASTG 3 cut(s) 504, 765, 783
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 6 cut(s) 122, 220, 236, 1088, 1462, 1473
TspRI CASTG 3 cut(s) 504, 765, 783
VneI GTGCAC 1 cut(s) 1014
VpaK11BI GGWCC 3 cut(s) 160, 1208, 1516
VspI ATTAAT 1 cut(s) 381
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 5 cut(s) 174, 227, 477, 916, 1216
XceI RCATGY 2 cut(s) 794, 1658
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
XhoI CTCGAG 1 cut(s) 1478
XmaJI CCTAGG 1 cut(s) 835
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 2 cut(s) 227, 1079
XspI CTAG 2 cut(s) 836, 1310
ZrmI AGTACT 1 cut(s) 1306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.