Prupe.2G211900_v2.0.a1

Synaptotagmin-3-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
24406695 .. 24410864
4170 bp
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UTR
Exon/CDS
Intron
Prupe.2G211900.1

Sequence Viewer

Length: 1656 bp
ATGGGGTTTCTGAGCAGTTTACTGGGAATCTTTGGCTTTGGAATTGGAATCCCTCTTGGACTCTTGGTGGGGTTTTTCCTTTTTATTTATTCGAAGCCCAAAGAAGTTGAGGATCCGGTAAGCAGGCCACTTTATGAGTTAGATGAACTTTCCTTGCAAGATCTTCTTCCAGAAATTCCATTGTGGGTGAAGAACCCTAATTATCATAGCGTAGACTGGTTGAATAAATTTATCTCAGATTTATGGCCTTACCTTGATAAGGAAATTGGAGGTATGATAAGGAGTGTGGCTCAACCTATATTTTCAGAGTACATTGGGAAGTTTCAGATTGAATCAATTGAGTTTGAGAAAATAAATCTGGGAACTCTTCCTCCTATTTTTTATGGTCTTCAAGTCTATGAGACTAATGAGAAGGAATTAATCCTAGAACCATCAATTAAATGGGCTGGCAATCCCAACATAATTTTGGTGGTAAAAGTTCTGTCTGTACCTATTACAATTCAGTTAGTAGATCTACAAGTATTTTTAGCACCAAGGATAGCTTTGAAACCTCTTGTGCCTGCCTTTCCATGTTTTGCAAACATTGTGGTGTCTTTGATGGAGAAGCCTCATGTTGATTTTGGAATGAAAATATTGGGAGGTGACATCATGTCTATACCCGGCCTCTATCATTTTGTTCAGGAGACTATTAAGAAGCAAGTTGCAAGCCTCTATCTCTGGCCCCAAACTCTTGAAATACCTGTTCTTGACATTTCGACAGTGGCCGTAAAGAAGCCGGTGGGAATATTACATGTGAATGTTGTTCGCGCAACTAAACTCTTGAGGAAGGATATCTTAGGATCATCTGATCCTTATGTCAAGCTCAGCCTGACTGGAGATGGGCTACCAGCAAAGAAAACGACTATCAAGATGAAAAACTTGAACCCTGAGTGGAATGAGAAGTTTAAGCTTATTGTAAAGGATCCCAAGTCCCAAGTTCTTCAGTTACAAGTCTATGACTGGGACAAGGTTGGGGGGCATGATAGGATAGGAATGCAGCTAGTTCCTCTCAAACAGCTAACACCCCATGAGATGAAGGAATTTAAGCTCGATTTGCTCAAGGACACAAATATTACTGATTCTCATAGCAAGAAGCAAAGAGGGCAGCTTGTGGTTGAGCTAACTTTTGTGCCTTTCAAAGAAGACACAAGCAAATATAGTGGAAAATTCAGTGGACCTATTGAAGCTTATAGGAGACACGAAAGCGAAATTGATATGTCAATGTCATCAGATGAGGGTACCCTAGGTGGATCAGGTGTACTATCAGTTATGATCCAAGGAGCCGAGGATGTCGAGGGGAAGTGTCACAATAATCCTTATGCTCTCCTCCTCTTTAGAGGAGAAAAGAAGAAAACGCATATGCTTAGGAAAACTCGTGATCCGCGCTGGAACGAGGAATTTCAGTTCATGCTGGATGAGCCTCCTTTGGACCAGAAAGTTCACATTGAGGTTCTGAGCAAGAGGACAGGCCTTAGTTTCCGGTTGAAGGAATCGTTGGGACATGTGGAAATTAATCTTAGAGACGTTGTGCACAACGGCCGGATCAACCAGAAATACCACCTAATCAATTCAAAGAATGGGATGATACATGTTGAGATTAGCTGGAAGATGATTTGA

Protein Analysis

552

Amino Acids

62.64

Weight (kDa)

7.73

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1277
AccB1I GGYRCC 1 cut(s) 1277
AccI GTMKAC 1 cut(s) 213
AccII CGCG 2 cut(s) 807, 1423
AciI CCGC 1 cut(s) 1421
AcoI YGGCCR 2 cut(s) 762, 1576
AcsI RAATTY 5 cut(s) 174, 227, 1079, 1205, 1436
AcuI CTGAAG 1 cut(s) 965
AfaI GTAC 4 cut(s) 311, 489, 1279, 1299
AfiI CCNNNNNNNGG 2 cut(s) 259, 1525
AflIII ACRYGT 3 cut(s) 790, 1540, 1627
AhdI GACNNNNNGTC 1 cut(s) 649
AjuI GAANNNNNNNTTGG 2 cut(s) 1517, 1549
AloI GAACNNNNNNTCC 4 cut(s) 355, 387, 1427, 1459
Alw21I GWGCWC 1 cut(s) 1572
Alw26I GTCTC 4 cut(s) 395, 677, 1228, 1554
Alw44I GTGCAC 1 cut(s) 1568
AoxI GGCC 7 cut(s) 125, 245, 661, 719, 762, 1507, 1576
ApaLI GTGCAC 1 cut(s) 1568
ApeKI GCWGC 2 cut(s) 1036, 1144
ApoI RAATTY 5 cut(s) 174, 227, 1079, 1205, 1436
AseI ATTAAT 2 cut(s) 419, 1551
Asp718I GGTACC 1 cut(s) 1277
AspA2I CCTAGG 1 cut(s) 1282
AspLEI GCGC 2 cut(s) 809, 1425
AspS9I GGNCC 3 cut(s) 720, 1214, 1468
AsuC2I CCSGG 1 cut(s) 660
AsuHPI GGTGA 2 cut(s) 199, 653
AsuII TTCGAA 1 cut(s) 92
AvaII GGWCC 2 cut(s) 1214, 1468
AvrII CCTAGG 1 cut(s) 1282
BaeGI GKGCMC 1 cut(s) 1572
BamHI GGATCC 2 cut(s) 112, 961
BanI GGYRCC 1 cut(s) 1277
BauI CACGAG 1 cut(s) 1413
BbsI GAAGAC 2 cut(s) 380, 1188
Bbv12I GWGCWC 1 cut(s) 1572
BbvI GCAGC 2 cut(s) 1048, 1156
BccI CCATC 3 cut(s) 439, 592, 872
BceAI ACGGC 2 cut(s) 749, 1591
BcnI CCSGG 1 cut(s) 660
BcoDI GTCTC 4 cut(s) 395, 677, 1228, 1554
BfaI CTAG 3 cut(s) 425, 1040, 1283
BglII AGATCT 2 cut(s) 160, 511
BisI GCNGC 2 cut(s) 1037, 1145
BlnI CCTAGG 1 cut(s) 1282
BlpI GCTNAGC 1 cut(s) 863
BlsI GCNGC 2 cut(s) 1038, 1146
Bme1390I CCNGG 1 cut(s) 660
Bme18I GGWCC 2 cut(s) 1214, 1468
BmeRI GACNNNNNGTC 1 cut(s) 649
BmgT120I GGNCC 3 cut(s) 720, 1214, 1468
BmiI GGNNCC 5 cut(s) 114, 722, 963, 1279, 1321
BmrFI CCNGG 1 cut(s) 660
BmrI ACTGGG 2 cut(s) 32, 1009
BmuI ACTGGG 2 cut(s) 32, 1009
BpiI GAAGAC 2 cut(s) 380, 1188
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 1 cut(s) 894
Bpu10I CCTNAGC 1 cut(s) 1403
Bpu1102I GCTNAGC 1 cut(s) 863
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 2 cut(s) 841, 1082
BpuMI CCSGG 1 cut(s) 660
BsaJI CCNNGG 4 cut(s) 533, 1282, 1315, 1323
BsaWI WCCGGW 2 cut(s) 115, 1518
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 1525
Bse118I RCCGGY 1 cut(s) 775
Bse1I ACTGG 4 cut(s) 27, 221, 877, 1004
BseDI CCNNGG 4 cut(s) 533, 1282, 1315, 1323
BseGI GGATG 3 cut(s) 1333, 1459, 1626
BseLI CCNNNNNNNGG 2 cut(s) 259, 1525
BseMII CTCAG 4 cut(s) 249, 877, 918, 1484
BseNI ACTGG 4 cut(s) 27, 221, 877, 1004
BseRI GAGGAG 3 cut(s) 1355, 1358, 1392
BseSI GKGCMC 1 cut(s) 1572
BseX3I CGGCCG 1 cut(s) 1576
BseXI GCAGC 2 cut(s) 1048, 1156
Bsh1236I CGCG 2 cut(s) 807, 1423
Bsh1285I CGRYCG 1 cut(s) 1579
BshFI GGCC 7 cut(s) 127, 247, 663, 721, 764, 1509, 1578
BshNI GGYRCC 1 cut(s) 1277
BsiEI CGRYCG 1 cut(s) 1579
BsiHKAI GWGCWC 1 cut(s) 1572
BsiSI CCGG 5 cut(s) 116, 660, 776, 1519, 1579
BslFI GGGAC 3 cut(s) 955, 1016, 1551
BslI CCNNNNNNNGG 2 cut(s) 259, 1525
BsmAI GTCTC 4 cut(s) 395, 677, 1228, 1554
BsmBI CGTCTC 1 cut(s) 1554
BsmFI GGGAC 3 cut(s) 955, 1016, 1551
BsmI GAATGC 1 cut(s) 1038
BsnI GGCC 7 cut(s) 127, 247, 663, 721, 764, 1509, 1578
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 1572
Bsp1720I GCTNAGC 1 cut(s) 863
BspACI CCGC 1 cut(s) 1421
BspANI GGCC 7 cut(s) 127, 247, 663, 721, 764, 1509, 1578
BspCNI CTCAG 4 cut(s) 248, 876, 919, 1485
BspFNI CGCG 2 cut(s) 807, 1423
BspLI GGNNCC 5 cut(s) 114, 722, 963, 1279, 1321
BspT104I TTCGAA 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 1277
BsrFI RCCGGY 1 cut(s) 775
BsrI ACTGG 4 cut(s) 27, 221, 877, 1004
BssAI RCCGGY 1 cut(s) 775
BssECI CCNNGG 4 cut(s) 533, 1282, 1315, 1323
BssSI CACGAG 1 cut(s) 1413
BssT1I CCWWGG 3 cut(s) 533, 1282, 1315
Bst2BI CACGAG 1 cut(s) 1413
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 4 cut(s) 125, 448, 561, 706
BstDEI CTNAG 9 cut(s) 11, 235, 835, 863, 927, 1403, 1493, 1511, 1556
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 3 cut(s) 1333, 1459, 1626
BstFNI CGCG 2 cut(s) 807, 1423
BstHHI GCGC 2 cut(s) 809, 1425
BstMAI GTCTC 4 cut(s) 395, 677, 1228, 1554
BstMCI CGRYCG 1 cut(s) 1579
BstMWI GCNNNNNNNGC 3 cut(s) 1093, 1141, 1456
BstNSI RCATGY 3 cut(s) 794, 1544, 1631
BstSCI CCNGG 1 cut(s) 658
BstSLI GKGCMC 1 cut(s) 1572
BstUI CGCG 2 cut(s) 807, 1423
BstV1I GCAGC 2 cut(s) 1048, 1156
BstV2I GAAGAC 2 cut(s) 380, 1188
BstX2I RGATCY 4 cut(s) 112, 160, 511, 961
BstYI RGATCY 4 cut(s) 112, 160, 511, 961
BstZI CGGCCG 1 cut(s) 1576
BsuRI GGCC 7 cut(s) 127, 247, 663, 721, 764, 1509, 1578
BtsCI GGATG 3 cut(s) 1333, 1459, 1626
BtsIMutI CAGTG 2 cut(s) 765, 1216
Cac8I GCNNGC 4 cut(s) 125, 448, 561, 706
CfoI GCGC 2 cut(s) 809, 1425
Cfr10I RCCGGY 1 cut(s) 775
Cfr13I GGNCC 3 cut(s) 720, 1214, 1468
Csp6I GTAC 4 cut(s) 310, 488, 1278, 1298
CspCI CAANNNNNGTGG 4 cut(s) 567, 602, 1180, 1215
CviAII CATG 9 cut(s) 570, 611, 649, 791, 1019, 1067, 1447, 1541, 1628
CviQI GTAC 4 cut(s) 310, 488, 1278, 1298
DdeI CTNAG 9 cut(s) 11, 235, 835, 863, 927, 1403, 1493, 1511, 1556
DriI GACNNNNNGTC 1 cut(s) 649
EaeI YGGCCR 2 cut(s) 762, 1576
EagI CGGCCG 1 cut(s) 1576
Eam1104I CTCTTC 1 cut(s) 372
Eam1105I GACNNNNNGTC 1 cut(s) 649
EarI CTCTTC 1 cut(s) 372
EclXI CGGCCG 1 cut(s) 1576
Eco130I CCWWGG 3 cut(s) 533, 1282, 1315
Eco147I AGGCCT 1 cut(s) 1509
Eco32I GATATC 1 cut(s) 832
Eco47I GGWCC 2 cut(s) 1214, 1468
Eco52I CGGCCG 1 cut(s) 1576
Eco57I CTGAAG 1 cut(s) 965
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRV GATATC 1 cut(s) 832
EcoT14I CCWWGG 3 cut(s) 533, 1282, 1315
ErhI CCWWGG 3 cut(s) 533, 1282, 1315
Esp3I CGTCTC 1 cut(s) 1554
FaeI CATG 9 cut(s) 573, 614, 652, 794, 1022, 1070, 1450, 1544, 1631
FalI AAGNNNNNCTT 6 cut(s) 150, 182, 526, 558, 818, 850
FaqI GGGAC 3 cut(s) 955, 1016, 1551
FatI CATG 9 cut(s) 569, 610, 648, 790, 1018, 1066, 1446, 1540, 1627
FauNDI CATATG 1 cut(s) 1398
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 1037, 1145
FokI GGATG 3 cut(s) 1340, 1466, 1633
Fsp4HI GCNGC 2 cut(s) 1037, 1145
FspBI CTAG 3 cut(s) 425, 1040, 1283
GlaI GCGC 2 cut(s) 808, 1424
GluI GCNGC 2 cut(s) 1037, 1145
GsuI CTGGAG 1 cut(s) 894
HaeIII GGCC 7 cut(s) 127, 247, 663, 721, 764, 1509, 1578
HapII CCGG 5 cut(s) 116, 660, 776, 1519, 1579
HhaI GCGC 2 cut(s) 809, 1425
Hin1II CATG 9 cut(s) 573, 614, 652, 794, 1022, 1070, 1450, 1544, 1631
Hin6I GCGC 2 cut(s) 807, 1423
HinP1I GCGC 2 cut(s) 807, 1423
HindIII AAGCTT 2 cut(s) 947, 1224
HinfI GANTC 6 cut(s) 27, 48, 60, 332, 1118, 1529
HpaII CCGG 5 cut(s) 116, 660, 776, 1519, 1579
HphI GGTGA 2 cut(s) 199, 653
Hpy166II GTNNAC 6 cut(s) 20, 214, 1214, 1298, 1480, 1570
Hpy188I TCNGA 7 cut(s) 12, 238, 307, 327, 847, 1270, 1494
Hpy188III TCNNGA 7 cut(s) 170, 680, 731, 746, 820, 907, 1415
Hpy8I GTNNAC 6 cut(s) 20, 214, 1214, 1298, 1480, 1570
HpyAV CCTTC 4 cut(s) 406, 820, 1069, 1519
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4IV ACGT 1 cut(s) 1563
HpyCH4V TGCA 5 cut(s) 157, 578, 704, 1036, 1570
HpyF10VI GCNNNNNNNGC 3 cut(s) 1093, 1141, 1456
HpyF3I CTNAG 9 cut(s) 11, 235, 835, 863, 927, 1403, 1493, 1511, 1556
HpySE526I ACGT 1 cut(s) 1563
Hsp92II CATG 9 cut(s) 573, 614, 652, 794, 1022, 1070, 1450, 1544, 1631
HspAI GCGC 2 cut(s) 807, 1423
KpnI GGTACC 1 cut(s) 1281
LmnI GCTCC 1 cut(s) 1319
Lsp1109I GCAGC 2 cut(s) 1048, 1156
MaeI CTAG 3 cut(s) 425, 1040, 1283
MaeII ACGT 1 cut(s) 1563
MaeIII GTNAC 3 cut(s) 641, 984, 1343
MboII GAAGA 8 cut(s) 155, 158, 202, 359, 380, 971, 1193, 1399
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 4 cut(s) 112, 160, 511, 961
MhlI GDGCHC 1 cut(s) 1572
MlyI GAGTC 1 cut(s) 54
MseI TTAA 6 cut(s) 419, 438, 690, 945, 1083, 1551
MslI CAYNNNNRTG 2 cut(s) 587, 795
MspI CCGG 5 cut(s) 116, 660, 776, 1519, 1579
MspR9I CCNGG 1 cut(s) 660
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 1038
MvnI CGCG 2 cut(s) 807, 1423
MwoI GCNNNNNNNGC 3 cut(s) 1093, 1141, 1456
NciI CCSGG 1 cut(s) 660
NdeI CATATG 1 cut(s) 1398
NlaIII CATG 9 cut(s) 573, 614, 652, 794, 1022, 1070, 1450, 1544, 1631
NlaIV GGNNCC 5 cut(s) 114, 722, 963, 1279, 1321
NmeAIII GCCGAG 1 cut(s) 1348
NmuCI GTSAC 2 cut(s) 641, 1343
NspI RCATGY 3 cut(s) 794, 1544, 1631
NspV TTCGAA 1 cut(s) 92
PceI AGGCCT 1 cut(s) 1509
PciI ACATGT 3 cut(s) 790, 1540, 1627
PctI GAATGC 1 cut(s) 1038
PfeI GAWTC 5 cut(s) 27, 48, 332, 1118, 1529
PkrI GCNGC 2 cut(s) 1038, 1146
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PscI ACATGT 3 cut(s) 790, 1540, 1627
PshBI ATTAAT 2 cut(s) 419, 1551
PspN4I GGNNCC 5 cut(s) 114, 722, 963, 1279, 1321
PspPI GGNCC 3 cut(s) 720, 1214, 1468
PsuI RGATCY 4 cut(s) 112, 160, 511, 961
RsaI GTAC 4 cut(s) 311, 489, 1279, 1299
RsaNI GTAC 4 cut(s) 310, 488, 1278, 1298
RseI CAYNNNNRTG 2 cut(s) 587, 795
SaqAI TTAA 6 cut(s) 419, 438, 690, 945, 1083, 1551
SatI GCNGC 2 cut(s) 1037, 1145
Sau96I GGNCC 3 cut(s) 720, 1214, 1468
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 1 cut(s) 660
SduI GDGCHC 1 cut(s) 1572
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 2 cut(s) 1214, 1468
SmiMI CAYNNNNRTG 2 cut(s) 587, 795
SmlI CTYRAG 2 cut(s) 820, 1097
SmoI CTYRAG 2 cut(s) 820, 1097
SseBI AGGCCT 1 cut(s) 1509
SsiI CCGC 1 cut(s) 1421
SspI AATATT 3 cut(s) 633, 786, 1111
SspMI CTAG 3 cut(s) 425, 1040, 1283
StuI AGGCCT 1 cut(s) 1509
StyD4I CCNGG 1 cut(s) 658
StyI CCWWGG 3 cut(s) 533, 1282, 1315
TaaI ACNGT 1 cut(s) 760
TaiI ACGT 1 cut(s) 1566
TaqI TCGA 4 cut(s) 92, 755, 1089, 1332
TatI WGTACW 2 cut(s) 309, 1297
TfiI GAWTC 5 cut(s) 27, 48, 332, 1118, 1529
Tru1I TTAA 6 cut(s) 419, 438, 690, 945, 1083, 1551
Tru9I TTAA 6 cut(s) 419, 438, 690, 945, 1083, 1551
TscAI CASTG 2 cut(s) 765, 1216
TseFI GTSAC 2 cut(s) 641, 1343
TseI GCWGC 2 cut(s) 1036, 1144
Tsp45I GTSAC 2 cut(s) 641, 1343
TspDTI ATGAA 5 cut(s) 159, 641, 926, 1088, 1435
TspRI CASTG 2 cut(s) 765, 1216
VneI GTGCAC 1 cut(s) 1568
VpaK11BI GGWCC 2 cut(s) 1214, 1468
VspI ATTAAT 2 cut(s) 419, 1551
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 5 cut(s) 174, 227, 1079, 1205, 1436
XceI RCATGY 3 cut(s) 794, 1544, 1631
XcmI CCANNNNNNNNNTGG 2 cut(s) 438, 463
XmaJI CCTAGG 1 cut(s) 1282
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 3 cut(s) 425, 1040, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.