Rmu_co8490065.1_g000001

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8490065.1
OG0001241
Physical Location & Seq
Reverse (-)
2 .. 2084
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8490065.1_g000001.1.cds

Sequence Viewer

Length: 701 bp
atggatccagatataaaatcactaaatgagtgtgatccaaactctctggttgatcttttctcagagattcctccatgggtgaagcaccctgactttgaaagaattgattggttgaacaaggctttacatgatatgtggccttaccttgataaggcaatatgcaagattatcagagaaacagcagagccaatatttgcagagtacgttggaaaatatcagataagatccataggatttcaaagcttgaatcttggaagtcttgctcctacaatttatggtattagagtgcacgaaaccaatgaaaatgaactagtaattgaacctgctattagatgggcaggaattccacacataactgttgtggtaaaaatattgtcagttcgacttatagttcagctgatggatgtccaagtatttgcaacgccaaggatgatcttaaggcctcttgtaccaacattcccatgttttggaaacataacactgactttgatagacaagccacatgtggactttggactcagattactgggaggggatgttatggcaatccccggtttctatcaatttgttcaggaatatataagaaatcaagttgctagcctttatttatggccccaaactttgaacataccaatccttcagggttcattatcaggaactataaagaagcctgtaggcatactgcatgtcaaggttgtaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

233

Amino Acids

26.45

Weight (kDa)

6.3

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 467
AclWI GGATC 3 cut(s) 12, 29, 219
AcsI RAATTY 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 623
AfaI GTAC 2 cut(s) 203, 450
AfiI CCNNNNNNNGG 2 cut(s) 151, 467
AflII CTTAAG 1 cut(s) 436
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 6 cut(s) 98, 115, 239, 247, 320, 625
AhlI ACTAGT 1 cut(s) 310
AluBI AGCT 2 cut(s) 243, 397
AluI AGCT 2 cut(s) 243, 397
Alw21I GWGCWC 1 cut(s) 291
Alw44I GTGCAC 1 cut(s) 287
AlwI GGATC 3 cut(s) 12, 29, 219
AoxI GGCC 3 cut(s) 137, 440, 611
ApaLI GTGCAC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 612
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 596
BaeGI GKGCMC 1 cut(s) 291
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 291
BccI CCATC 2 cut(s) 327, 394
BcnI CCSGG 1 cut(s) 552
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 2 cut(s) 311, 597
BfmI CTRYAG 1 cut(s) 672
BfrI CTTAAG 1 cut(s) 436
BfuAI ACCTGC 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 552
BmgT120I GGNCC 1 cut(s) 612
BmiI GGNNCC 2 cut(s) 6, 614
BmrFI CCNGG 1 cut(s) 552
BmrI ACTGGG 1 cut(s) 536
BmtI GCTAGC 1 cut(s) 600
BmuI ACTGGG 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 552
BsaJI CCNNGG 3 cut(s) 74, 425, 550
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 467
Bse1I ACTGG 1 cut(s) 531
BseDI CCNNGG 3 cut(s) 74, 425, 550
BseGI GGATG 3 cut(s) 409, 435, 541
BseLI CCNNNNNNNGG 2 cut(s) 151, 467
BseMII CTCAG 2 cut(s) 75, 532
BseNI ACTGG 1 cut(s) 531
BseSI GKGCMC 1 cut(s) 291
BshFI GGCC 3 cut(s) 139, 442, 613
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 552
BslI CCNNNNNNNGG 2 cut(s) 151, 467
BsnI GGCC 3 cut(s) 139, 442, 613
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 5 cut(s) 4, 34, 52, 224, 432
Bsp19I CCATGG 1 cut(s) 74
BspANI GGCC 3 cut(s) 139, 442, 613
BspCNI CTCAG 2 cut(s) 74, 531
BspLI GGNNCC 2 cut(s) 6, 614
BspMI ACCTGC 1 cut(s) 331
BspOI GCTAGC 1 cut(s) 600
BspPI GGATC 3 cut(s) 12, 29, 219
BspTI CTTAAG 1 cut(s) 436
BsrI ACTGG 1 cut(s) 531
BssECI CCNNGG 3 cut(s) 74, 425, 550
BssMI GATC 5 cut(s) 4, 34, 52, 224, 432
BssT1I CCWWGG 2 cut(s) 74, 425
Bst4CI ACNGT 1 cut(s) 358
BstAFI CTTAAG 1 cut(s) 436
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 2 cut(s) 61, 518
BstDSI CCRYGG 1 cut(s) 74
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 3 cut(s) 409, 435, 541
BstKTI GATC 5 cut(s) 7, 37, 55, 227, 435
BstMBI GATC 5 cut(s) 4, 34, 52, 224, 432
BstNSI RCATGY 2 cut(s) 506, 689
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 1 cut(s) 291
BstX2I RGATCY 2 cut(s) 4, 224
BstYI RGATCY 2 cut(s) 4, 224
BsuRI GGCC 3 cut(s) 139, 442, 613
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 3 cut(s) 409, 435, 541
BtsIMutI CAGTG 1 cut(s) 479
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 598
Cfr13I GGNCC 1 cut(s) 612
Csp6I GTAC 2 cut(s) 202, 449
CviAII CATG 5 cut(s) 75, 128, 462, 503, 686
CviQI GTAC 2 cut(s) 202, 449
DdeI CTNAG 2 cut(s) 61, 518
DpnI GATC 5 cut(s) 6, 36, 54, 226, 434
DpnII GATC 5 cut(s) 4, 34, 52, 224, 432
Eco130I CCWWGG 2 cut(s) 74, 425
Eco147I AGGCCT 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 623
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 342
EcoT14I CCWWGG 2 cut(s) 74, 425
ErhI CCWWGG 2 cut(s) 74, 425
FaeI CATG 5 cut(s) 78, 131, 465, 506, 689
FatI CATG 5 cut(s) 74, 127, 461, 502, 685
FokI GGATG 3 cut(s) 416, 442, 548
FspBI CTAG 2 cut(s) 311, 597
HaeIII GGCC 3 cut(s) 139, 442, 613
HapII CCGG 1 cut(s) 552
Hin1II CATG 5 cut(s) 78, 131, 465, 506, 689
HindIII AAGCTT 1 cut(s) 241
HinfI GANTC 3 cut(s) 67, 247, 516
HpaII CCGG 1 cut(s) 552
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 289, 508
Hpy188I TCNGA 4 cut(s) 64, 173, 219, 521
Hpy188III TCNNGA 3 cut(s) 8, 572, 654
Hpy8I GTNNAC 2 cut(s) 289, 508
HpyAV CCTTC 1 cut(s) 647
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 5 cut(s) 162, 197, 289, 419, 685
HpyF3I CTNAG 2 cut(s) 61, 518
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 5 cut(s) 78, 131, 465, 506, 689
Kzo9I GATC 5 cut(s) 4, 34, 52, 224, 432
LmnI GCTCC 1 cut(s) 268
MaeI CTAG 2 cut(s) 311, 597
MaeII ACGT 1 cut(s) 204
MalI GATC 5 cut(s) 6, 36, 54, 226, 434
MboI GATC 5 cut(s) 4, 34, 52, 224, 432
MflI RGATCY 2 cut(s) 4, 224
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 5 cut(s) 102, 270, 315, 342, 563
MlyI GAGTC 1 cut(s) 510
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 3 cut(s) 81, 453, 524
MseI TTAA 1 cut(s) 437
MslI CAYNNNNRTG 1 cut(s) 460
MspA1I CMGCKG 1 cut(s) 397
MspCI CTTAAG 1 cut(s) 436
MspI CCGG 1 cut(s) 552
MspR9I CCNGG 1 cut(s) 552
NciI CCSGG 1 cut(s) 552
NcoI CCATGG 1 cut(s) 74
NdeII GATC 5 cut(s) 4, 34, 52, 224, 432
NheI GCTAGC 1 cut(s) 596
NlaIII CATG 5 cut(s) 78, 131, 465, 506, 689
NlaIV GGNNCC 2 cut(s) 6, 614
NspI RCATGY 2 cut(s) 506, 689
PceI AGGCCT 1 cut(s) 442
PciI ACATGT 1 cut(s) 502
PfeI GAWTC 2 cut(s) 67, 247
PflMI CCANNNNNTGG 1 cut(s) 467
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
PscI ACATGT 1 cut(s) 502
PspN4I GGNNCC 2 cut(s) 6, 614
PspPI GGNCC 1 cut(s) 612
PsuI RGATCY 2 cut(s) 4, 224
PvuII CAGCTG 1 cut(s) 397
RsaI GTAC 2 cut(s) 203, 450
RsaNI GTAC 2 cut(s) 202, 449
RseI CAYNNNNRTG 1 cut(s) 460
SaqAI TTAA 1 cut(s) 437
Sau3AI GATC 5 cut(s) 4, 34, 52, 224, 432
Sau96I GGNCC 1 cut(s) 612
SchI GAGTC 1 cut(s) 510
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 1 cut(s) 291
SetI ASST 6 cut(s) 147, 207, 245, 325, 399, 696
SfcI CTRYAG 1 cut(s) 672
SmiMI CAYNNNNRTG 1 cut(s) 460
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
SpeI ACTAGT 1 cut(s) 310
Sse9I AATT 5 cut(s) 102, 270, 315, 342, 563
SseBI AGGCCT 1 cut(s) 442
SspI AATATT 2 cut(s) 192, 372
SspMI CTAG 2 cut(s) 311, 597
StuI AGGCCT 1 cut(s) 442
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 2 cut(s) 74, 425
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 382
TasI AATT 5 cut(s) 102, 270, 315, 342, 563
TfiI GAWTC 2 cut(s) 67, 247
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 1 cut(s) 486
TspDTI ATGAA 3 cut(s) 315, 321, 636
TspRI CASTG 1 cut(s) 486
Van91I CCANNNNNTGG 1 cut(s) 467
Vha464I CTTAAG 1 cut(s) 436
VneI GTGCAC 1 cut(s) 287
XagI CCTNNNNNAGG 1 cut(s) 149
XapI RAATTY 1 cut(s) 342
XceI RCATGY 2 cut(s) 506, 689
XspI CTAG 2 cut(s) 311, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.