Rw3G014470

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001241
Physical Location & Seq
Reverse (-)
14582401 .. 14586407
4007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G014470.1

Sequence Viewer

Length: 1695 bp
ATGAGACATCTGTATTTCGTATTCGAGTTTATTGGATTTCTTATTGGGTTTCCGATCGGTCTTCTACTGGGTTTCTTCATATTCATATACTCATCACAGCCTGAGGATGTGAAGGATCCAGATATAAAATCACTAAATGAGTGTGATCCAAACTCTCTGGTTGATCTTTTCTCAGAGATTCCTCCATGGGTGAAGCACCCTGACTTTGAAAGAATTGATTGGTTGAACAAGGCTTTACATGATATGTGGCCTTACCTTGATAAGGCAATATGCAAGATTATCAGAGAAACAGCAGAGCCAATATTTGCAGAGTACGTTGGAAAATATCAGATAAGATCCATAGGATTTCAAAGCTTGAATCTTGGAAGTCTTCCTCCTACAATTTATGGTATTAGAGTGCACGAAACCAATGAAAATGAACTAGTAATTGAACCTGCTATTAGATGGGCAGGAATTCCACACATAACTGTTGTGGTAAAAATATTGTCAGTTCGACTTATAGTTCAGCTGATGGATGTCCAAGTATTTGCAACGCCAAGGATGATCTTAAGGCCTCTTGTACCAACATTCCCATATATGTCATGTATGTATATGCAGCCACATGTGGACTTTGGACTCAGATTACTGGGAGGGGATGTTATGGCAATCCCCGGTTTCTATCAATTTGTTCAGGAATATATAAGAAATCAAGTTGCTAGCCTTTATTTATGGCCCCAAACTTTGAACATACCAATTCTTCAGGGTTCATTATCAGGAACTATAAAGAAGCCTGTAGGCATACTGCATGTCAAGGTTGTAAGAGCTAAGAAACTCTTGAAGGCGGACATCATAGGAAGATCTGATCCTTATGTTAAAATCAAACTAACCGGGGAGAGGCTTCCATCAAAGAAAACTAGCATTAAGATGAGGAACTTGAACCCTGAATGGAATGAGAATTTCAAGCTTACAGTCAAAGATCCAGAGTCCCAATTCATTCAGTTCAATGTTTTCGACTGGGATCAGATTGGGACGCATGACCCTTTGGGAATGCAAATTCTTCCACTGAAGTTGCTAACTCCATATGACACACAAGAATTTACGCTTGATTTAGTAAACAGCACAAACCCTTATGATCCTCAAAACAAGAAAAAAAGAGGCCAACTTATGGTGGAGTTGACATATAATCCTTTTATAGAAGAGAGTGGTAGTGGAATATATAACAGTGAACCTTTGGATGGAGATAAAGTGGTAGATGGAAAAAAGCTTGGAATTAAAAGCCAAGTTAGGAGCCGAAAGCCATCCATGTCCGTAGACATGTCTTCACAAATAGATGCAGCTGGTCTGCTTCTGGTTACAGTTCAAGGAGCAGAAGAACTTGAGAGCAAGCTTTACGATAACCCTAATCCTTACGTACTGGTTAGGTTTTCAGGAGAAAAGAGGAAAACCAAGATGATAAAGAGATCGCATCGGCCATATTGGAATGAAGAATTTCAGTTTGTGGTAGAAGAGGCGACTTTGAAGGAGAAGATTCGTTTTGAAGTAAAGAGTAAGAAAAGAAACCTTTTCGCTTATCGTTTCCGAAAAAAGGAATTGTTGGGGTACGTTGACATCAATTTTAGTGATGTGGTATACAATGGACGCATTAGAGGCAAGTACAATTTGATTAACTCGAAAAATGCAGTTATACATATCGAGTTGCAGTGGAGCACCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

564

Amino Acids

65.1

Weight (kDa)

9.03

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 68 - 245 1.1e-13 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 259 - 357 4.3e-24 C2 domain
C2 PF00168 441 - 547 8.4e-17 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 1144
AccI GTMKAC 2 cut(s) 1290, 1608
AciI CCGC 1 cut(s) 821
AclWI GGATC 8 cut(s) 110, 123, 140, 330, 836, 950, 1005, 1106
AcoI YGGCCR 1 cut(s) 1448
AcsI RAATTY 5 cut(s) 453, 934, 1032, 1073, 1466
AcuI CTGAAG 2 cut(s) 722, 1064
AfaI GTAC 5 cut(s) 314, 561, 1392, 1580, 1634
AfiI CCNNNNNNNGG 5 cut(s) 262, 873, 1144, 1214, 1564
AflII CTTAAG 1 cut(s) 547
AflIII ACRYGT 2 cut(s) 601, 1293
AhlI ACTAGT 1 cut(s) 421
AluBI AGCT 7 cut(s) 354, 508, 803, 943, 1243, 1316, 1366
AluI AGCT 7 cut(s) 354, 508, 803, 943, 1243, 1316, 1366
Alw21I GWGCWC 2 cut(s) 402, 1688
Alw44I GTGCAC 1 cut(s) 398
AlwI GGATC 8 cut(s) 110, 123, 140, 330, 836, 950, 1005, 1106
AoxI GGCC 5 cut(s) 248, 551, 710, 1135, 1448
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 595, 1313
ApoI RAATTY 5 cut(s) 453, 934, 1032, 1073, 1466
Asp700I GAANNNNTTC 1 cut(s) 1467
AspS9I GGNCC 1 cut(s) 711
AsuC2I CCSGG 2 cut(s) 651, 868
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 695
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 402
BamHI GGATCC 1 cut(s) 115
BbsI GAAGAC 3 cut(s) 53, 362, 1290
Bbv12I GWGCWC 2 cut(s) 402, 1688
BbvI GCAGC 2 cut(s) 607, 1325
BccI CCATC 6 cut(s) 438, 505, 889, 1208, 1226, 1285
BcnI CCSGG 2 cut(s) 651, 868
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 3 cut(s) 422, 696, 894
BfmI CTRYAG 1 cut(s) 771
BfrI CTTAAG 1 cut(s) 547
BfuAI ACCTGC 1 cut(s) 442
BglII AGATCT 1 cut(s) 836
BisI GCNGC 2 cut(s) 596, 1314
BlsI GCNGC 2 cut(s) 597, 1315
Bme1390I CCNGG 2 cut(s) 651, 868
BmgT120I GGNCC 1 cut(s) 711
BmiI GGNNCC 3 cut(s) 117, 713, 1268
BmrFI CCNGG 2 cut(s) 651, 868
BmrI ACTGGG 3 cut(s) 77, 635, 1003
BmsI GCATC 2 cut(s) 1300, 1453
BmtI GCTAGC 1 cut(s) 699
BmuI ACTGGG 3 cut(s) 77, 635, 1003
BpiI GAAGAC 3 cut(s) 53, 362, 1290
BpuEI CTTGAG 1 cut(s) 1376
BpuMI CCSGG 2 cut(s) 651, 868
BsaAI YACGTR 1 cut(s) 1390
BsaJI CCNNGG 4 cut(s) 185, 536, 649, 867
BsaXI ACNNNNNCTCC 4 cut(s) 621, 651, 1209, 1239
Bsc4I CCNNNNNNNGG 5 cut(s) 262, 873, 1144, 1214, 1564
Bse1I ACTGG 4 cut(s) 72, 630, 998, 1398
Bse21I CCTNAGG 1 cut(s) 102
BseDI CCNNGG 4 cut(s) 185, 536, 649, 867
BseGI GGATG 6 cut(s) 112, 520, 546, 640, 1219, 1277
BseLI CCNNNNNNNGG 5 cut(s) 262, 873, 1144, 1214, 1564
BseMII CTCAG 3 cut(s) 93, 186, 631
BseNI ACTGG 4 cut(s) 72, 630, 998, 1398
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 2 cut(s) 607, 1325
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 5 cut(s) 250, 553, 712, 1137, 1450
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 402, 1688
BsiSI CCGG 2 cut(s) 651, 867
BslFI GGGAC 2 cut(s) 949, 1021
BslI CCNNNNNNNGG 5 cut(s) 262, 873, 1144, 1214, 1564
BsmFI GGGAC 2 cut(s) 949, 1021
BsmI GAATGC 1 cut(s) 1032
BsnI GGCC 5 cut(s) 250, 553, 712, 1137, 1450
Bsp1286I GDGCHC 2 cut(s) 402, 1688
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 1 cut(s) 821
BspANI GGCC 5 cut(s) 250, 553, 712, 1137, 1450
BspCNI CTCAG 3 cut(s) 94, 185, 630
BspLI GGNNCC 3 cut(s) 117, 713, 1268
BspMI ACCTGC 1 cut(s) 442
BspOI GCTAGC 1 cut(s) 699
BspPI GGATC 8 cut(s) 110, 123, 140, 330, 836, 950, 1005, 1106
BspTI CTTAAG 1 cut(s) 547
BsrI ACTGG 4 cut(s) 72, 630, 998, 1398
BssECI CCNNGG 4 cut(s) 185, 536, 649, 867
BssNAI GTATAC 1 cut(s) 1609
BssT1I CCWWGG 2 cut(s) 185, 536
Bst1107I GTATAC 1 cut(s) 1609
Bst4CI ACNGT 4 cut(s) 469, 949, 1202, 1336
Bst6I CTCTTC 2 cut(s) 1170, 1479
BstAFI CTTAAG 1 cut(s) 547
BstBAI YACGTR 1 cut(s) 1390
BstC8I GCNNGC 2 cut(s) 697, 1364
BstDEI CTNAG 4 cut(s) 102, 172, 617, 804
BstDSI CCRYGG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 6 cut(s) 112, 520, 546, 640, 1219, 1277
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 1626
BstNSI RCATGY 3 cut(s) 605, 788, 1297
BstSCI CCNGG 2 cut(s) 649, 866
BstSFI CTRYAG 1 cut(s) 771
BstSLI GKGCMC 1 cut(s) 402
BstSNI TACGTA 1 cut(s) 1390
BstV1I GCAGC 2 cut(s) 607, 1325
BstV2I GAAGAC 3 cut(s) 53, 362, 1290
BstX2I RGATCY 4 cut(s) 115, 335, 836, 955
BstYI RGATCY 4 cut(s) 115, 335, 836, 955
BstZ17I GTATAC 1 cut(s) 1609
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 5 cut(s) 250, 553, 712, 1137, 1450
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 6 cut(s) 112, 520, 546, 640, 1219, 1277
BtsI GCAGTG 1 cut(s) 1685
BtsIMutI CAGTG 3 cut(s) 1040, 1207, 1685
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 2 cut(s) 697, 1364
Cfr13I GGNCC 1 cut(s) 711
CseI GACGC 2 cut(s) 1018, 1626
Csp6I GTAC 5 cut(s) 313, 560, 1391, 1579, 1633
CspCI CAANNNNNGTGG 2 cut(s) 1029, 1064
CviAII CATG 9 cut(s) 186, 239, 582, 602, 785, 1013, 1282, 1294, 1692
CviQI GTAC 5 cut(s) 313, 560, 1391, 1579, 1633
DdeI CTNAG 4 cut(s) 102, 172, 617, 804
EaeI YGGCCR 1 cut(s) 1448
Eam1104I CTCTTC 2 cut(s) 1170, 1479
EarI CTCTTC 2 cut(s) 1170, 1479
EciI GGCGGA 1 cut(s) 836
Eco105I TACGTA 1 cut(s) 1390
Eco130I CCWWGG 2 cut(s) 185, 536
Eco147I AGGCCT 1 cut(s) 553
Eco57I CTGAAG 2 cut(s) 722, 1064
Eco81I CCTNAGG 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 185, 536
ErhI CCWWGG 2 cut(s) 185, 536
FaeI CATG 9 cut(s) 189, 242, 585, 605, 788, 1016, 1285, 1297, 1695
FalI AAGNNNNNCTT 2 cut(s) 797, 829
FaqI GGGAC 2 cut(s) 949, 1021
FatI CATG 9 cut(s) 185, 238, 581, 601, 784, 1012, 1281, 1293, 1691
FauNDI CATATG 1 cut(s) 1060
FblI GTMKAC 2 cut(s) 1290, 1608
Fnu4HI GCNGC 2 cut(s) 596, 1314
FokI GGATG 6 cut(s) 119, 527, 553, 647, 1226, 1264
Fsp4HI GCNGC 2 cut(s) 596, 1314
FspBI CTAG 3 cut(s) 422, 696, 894
GluI GCNGC 2 cut(s) 596, 1314
HaeIII GGCC 5 cut(s) 250, 553, 712, 1137, 1450
HapII CCGG 2 cut(s) 651, 867
HgaI GACGC 2 cut(s) 1018, 1626
Hin1II CATG 9 cut(s) 189, 242, 585, 605, 788, 1016, 1285, 1297, 1695
HincII GTYRAC 2 cut(s) 1155, 1585
HindII GTYRAC 2 cut(s) 1155, 1585
HindIII AAGCTT 4 cut(s) 352, 941, 1241, 1364
HinfI GANTC 5 cut(s) 178, 358, 615, 962, 1507
HpaII CCGG 2 cut(s) 651, 867
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 8 cut(s) 400, 607, 1093, 1155, 1205, 1291, 1585, 1609
Hpy188I TCNGA 8 cut(s) 54, 175, 284, 330, 620, 841, 1002, 1559
Hpy188III TCNNGA 6 cut(s) 119, 671, 753, 814, 959, 1407
Hpy8I GTNNAC 8 cut(s) 400, 607, 1093, 1155, 1205, 1291, 1585, 1609
HpyAV CCTTC 3 cut(s) 106, 811, 1492
HpyCH4III ACNGT 4 cut(s) 469, 949, 1202, 1336
HpyCH4IV ACGT 3 cut(s) 315, 1389, 1581
HpyF10VI GCNNNNNNNGC 1 cut(s) 1626
HpyF3I CTNAG 4 cut(s) 102, 172, 617, 804
HpySE526I ACGT 3 cut(s) 315, 1389, 1581
Hsp92II CATG 9 cut(s) 189, 242, 585, 605, 788, 1016, 1285, 1297, 1695
LmnI GCTCC 3 cut(s) 1266, 1343, 1683
Lsp1109I GCAGC 2 cut(s) 607, 1325
LweI GCATC 2 cut(s) 1300, 1453
MaeI CTAG 3 cut(s) 422, 696, 894
MaeII ACGT 3 cut(s) 315, 1389, 1581
MaeIII GTNAC 1 cut(s) 1330
MflI RGATCY 4 cut(s) 115, 335, 836, 955
MhlI GDGCHC 2 cut(s) 402, 1688
MlyI GAGTC 2 cut(s) 609, 971
MmeI TCCRAC 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 1467
MseI TTAA 5 cut(s) 548, 852, 900, 1251, 1644
MslI CAYNNNNRTG 1 cut(s) 902
MspA1I CMGCKG 2 cut(s) 508, 1316
MspCI CTTAAG 1 cut(s) 547
MspI CCGG 2 cut(s) 651, 867
MspR9I CCNGG 2 cut(s) 651, 868
Mva1269I GAATGC 1 cut(s) 1032
MwoI GCNNNNNNNGC 1 cut(s) 1626
NciI CCSGG 2 cut(s) 651, 868
NcoI CCATGG 1 cut(s) 185
NdeI CATATG 1 cut(s) 1060
NheI GCTAGC 1 cut(s) 695
NlaIII CATG 9 cut(s) 189, 242, 585, 605, 788, 1016, 1285, 1297, 1695
NlaIV GGNNCC 3 cut(s) 117, 713, 1268
NspI RCATGY 3 cut(s) 605, 788, 1297
PceI AGGCCT 1 cut(s) 553
PciI ACATGT 2 cut(s) 601, 1293
PctI GAATGC 1 cut(s) 1032
PdmI GAANNNNTTC 1 cut(s) 1467
PfeI GAWTC 3 cut(s) 178, 358, 1507
PflMI CCANNNNNTGG 1 cut(s) 1144
PkrI GCNGC 2 cut(s) 597, 1315
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 2 cut(s) 609, 970
PpsI GAGTC 2 cut(s) 609, 970
Ppu21I YACGTR 1 cut(s) 1390
PscI ACATGT 2 cut(s) 601, 1293
PspN4I GGNNCC 3 cut(s) 117, 713, 1268
PspPI GGNCC 1 cut(s) 711
PsuI RGATCY 4 cut(s) 115, 335, 836, 955
PvuI CGATCG 1 cut(s) 57
PvuII CAGCTG 2 cut(s) 508, 1316
RsaI GTAC 5 cut(s) 314, 561, 1392, 1580, 1634
RsaNI GTAC 5 cut(s) 313, 560, 1391, 1579, 1633
RseI CAYNNNNRTG 1 cut(s) 902
SaqAI TTAA 5 cut(s) 548, 852, 900, 1251, 1644
SatI GCNGC 2 cut(s) 596, 1314
Sau96I GGNCC 1 cut(s) 711
SchI GAGTC 2 cut(s) 609, 971
ScrFI CCNGG 2 cut(s) 651, 868
SduI GDGCHC 2 cut(s) 402, 1688
SfaNI GCATC 2 cut(s) 1300, 1453
SfcI CTRYAG 1 cut(s) 771
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 2 cut(s) 547, 1355
SmoI CTYRAG 2 cut(s) 547, 1355
SnaBI TACGTA 1 cut(s) 1390
SpeI ACTAGT 1 cut(s) 421
SseBI AGGCCT 1 cut(s) 553
SsiI CCGC 1 cut(s) 821
SspI AATATT 2 cut(s) 303, 483
SspMI CTAG 3 cut(s) 422, 696, 894
StuI AGGCCT 1 cut(s) 553
StyD4I CCNGG 2 cut(s) 649, 866
StyI CCWWGG 2 cut(s) 185, 536
TaaI ACNGT 4 cut(s) 469, 949, 1202, 1336
TaiI ACGT 3 cut(s) 318, 1392, 1584
TaqI TCGA 5 cut(s) 24, 493, 990, 1649, 1671
TaqII GACCGA 1 cut(s) 47
TatI WGTACW 1 cut(s) 1632
TfiI GAWTC 3 cut(s) 178, 358, 1507
Tru1I TTAA 5 cut(s) 548, 852, 900, 1251, 1644
Tru9I TTAA 5 cut(s) 548, 852, 900, 1251, 1644
TscAI CASTG 3 cut(s) 1047, 1207, 1685
TseI GCWGC 2 cut(s) 595, 1313
TspDTI ATGAA 7 cut(s) 67, 73, 426, 432, 735, 961, 1476
TspGWI ACGGA 1 cut(s) 1276
TspRI CASTG 3 cut(s) 1047, 1207, 1685
Van91I CCANNNNNTGG 1 cut(s) 1144
Vha464I CTTAAG 1 cut(s) 547
VneI GTGCAC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 5 cut(s) 453, 934, 1032, 1073, 1466
XceI RCATGY 3 cut(s) 605, 788, 1297
XmiI GTMKAC 2 cut(s) 1290, 1608
XmnI GAANNNNTTC 1 cut(s) 1467
XspI CTAG 3 cut(s) 422, 696, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.