Rh3AG153500

Synaptotagmin-3-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
13881386 .. 13885377
3992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG153500.1

Sequence Viewer

Length: 1749 bp
ATGAGACATCTGTATTTCGTATTCGAGTTTATTGGATTTCTTATTGGGTTTCCGATCGGTCTTCTACTGGGTTTCTTCATATTCATATACTCATCACAGCCTGAGGATGTGAAGGATCCAGATATAAAATCACTAAATGAGTGTGATCCAAACTCTCTGGTTGATCTTTTCTCAGAGATTCCTCCATGGGTGAAGCACCCTGACTTTGAAAGAATTGATTGGTTGAACAAGGCTTTACATGATATGTGGCCTTACCTTGATAAGGCAATATGCAAGATTATCAGAGAAACAGCAGAGCCAATATTTGCAGAGTACGTTGGAAAATATCAGATAAGATCCATAGGATTTCAAAGCTTGAATCTTGGAAGTCTTCCTCCTACAATTTATGGTATTAGAGTGCACGAAACCAATGAAAATGAACTAGTAATTGAACCTGCTATTAGATGGGCAGGAATTCCACACATAAATGTTGTGGTAAACATATTGTCAGTTCGACTTATAGTTCAGCTGATGGATGTCCAAGTATTTGCAACGCCAAGGATGATCTTAAGGCCTCTTGTACCAACATTCCCATGTTTTGGAAACATAACAATGACTTTGATAGACAAGCCACATGTGGACTTTGGACTCAGATTACTGGGAGGGGATGTTATGGCAATCCCCGGTTTCTATCAATTTGTTCAGGAATATATAAGAAATCAAGTTGCTAGCCTTTATTTATGGCCCCAAACTTTGAACATACCAATTCTTCAGGGTTCATTATCAGGAACTATAAAGAAGCCTGTAGGCATACTGCATGTCAAGGTTGTAAGAGCTAAGAAACTCTTGAAGGCGGACATCATTGGAAGATCTGATCCTTATGTTAAAATCAAACTAACCGGGGAGAGGCTTCCATCAAAGAAAACTAGCATTAAGATGAGGAACTTGAACCCTGAATGGAATGAGAATTTCAAGCTTACAGTCAAAGATCCAGAGTCCCAATTCATTCAGTTCAATGTTTTCGACTGGGATCAGATTGGGACGCATGACCCTTTGGGAATGCAAATTCTTCCACTGAAGTTGCTAACTCCATATGACACACAAGAATTTACGCTTGATTTAGTAAACAGCACAAACCCTTATGATCCTCAAAACAAGAAAAAAAGAGGCCAACTTATGGTGGAGTTGACATATAATCCTTTTATAGAAGAGAGTGGTAGTGGAATATATAACAGTGAACCTTTGGATGGAGATAAAGTGGTAGATGGAAAAAAGCTTGGAATTAAAAGCCAAGTTAGGAGCCGAAAGCCATCCATGTCCGTAGACATGTCTTCACAAATAGATGCAGCTGGTCTGCTTTTGGTTACAGTTCAAGGAGCAGAAGAACTTGAGAGCAAGCTTTACGATAACCCTAATCCTTACGTACTGGTTAGGTTTTCAGGAGAAAAGAGGAAAACCAAGATGATAAAGAGATCCCATCGGCCATATTGGAATGAAGAATTTCAGTTTGTGGTAGAAGAAGCGACTTTGAAGGAGAAGATTCGTTTTGAAGTAAAGAGTAAGAAAAGAAACCTTTTCGCTTATCGTTTCCGAAAAAAGGTTTGGTCATTTACCATAAACTCATCAATTTTAGGTCATGTATATTTCTGTTTATTTGAATCAAAACCATCTGAAACATTATCATCTTTATCTAGGAATTGTTGGGGTACGTTGACATCAATTTTAGTGATGTGGTATACAATGGACGCATTAGAGGCAAGTACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

582

Amino Acids

66.89

Weight (kDa)

8.74

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 68 - 249 8.2e-17 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 263 - 361 4.6e-24 C2 domain
C2 PF00168 445 - 516 3.3e-13 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 442
AccB7I CCANNNNNTGG 2 cut(s) 578, 1156
AccI GTMKAC 2 cut(s) 1302, 1715
AciI CCGC 1 cut(s) 833
AclWI GGATC 9 cut(s) 110, 123, 140, 330, 848, 962, 1017, 1118, 1446
AcoI YGGCCR 1 cut(s) 1460
AcsI RAATTY 5 cut(s) 453, 946, 1044, 1085, 1478
AcuI CTGAAG 2 cut(s) 734, 1076
AfaI GTAC 5 cut(s) 314, 561, 1404, 1687, 1741
AfiI CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
AflII CTTAAG 1 cut(s) 547
AflIII ACRYGT 2 cut(s) 613, 1305
AhlI ACTAGT 1 cut(s) 421
AjuI GAANNNNNNNTTGG 2 cut(s) 1564, 1596
AluBI AGCT 7 cut(s) 354, 508, 815, 955, 1255, 1328, 1378
AluI AGCT 7 cut(s) 354, 508, 815, 955, 1255, 1328, 1378
Alw21I GWGCWC 1 cut(s) 402
Alw44I GTGCAC 1 cut(s) 398
AlwI GGATC 9 cut(s) 110, 123, 140, 330, 848, 962, 1017, 1118, 1446
AoxI GGCC 5 cut(s) 248, 551, 722, 1147, 1460
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 1325
ApoI RAATTY 5 cut(s) 453, 946, 1044, 1085, 1478
Asp700I GAANNNNTTC 1 cut(s) 1479
AspS9I GGNCC 1 cut(s) 723
AsuC2I CCSGG 2 cut(s) 663, 880
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 707
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 402
BamHI GGATCC 1 cut(s) 115
BbsI GAAGAC 3 cut(s) 53, 362, 1302
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 1337
BccI CCATC 8 cut(s) 438, 505, 901, 1220, 1238, 1297, 1464, 1654
BcnI CCSGG 2 cut(s) 663, 880
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 4 cut(s) 422, 708, 906, 1671
BfmI CTRYAG 1 cut(s) 783
BfrI CTTAAG 1 cut(s) 547
BfuAI ACCTGC 1 cut(s) 442
BglII AGATCT 1 cut(s) 848
BisI GCNGC 1 cut(s) 1326
BlsI GCNGC 1 cut(s) 1327
Bme1390I CCNGG 2 cut(s) 663, 880
BmgT120I GGNCC 1 cut(s) 723
BmiI GGNNCC 3 cut(s) 117, 725, 1280
BmrFI CCNGG 2 cut(s) 663, 880
BmrI ACTGGG 3 cut(s) 77, 647, 1015
BmsI GCATC 1 cut(s) 1312
BmtI GCTAGC 1 cut(s) 711
BmuI ACTGGG 3 cut(s) 77, 647, 1015
BpiI GAAGAC 3 cut(s) 53, 362, 1302
BpuEI CTTGAG 1 cut(s) 1388
BpuMI CCSGG 2 cut(s) 663, 880
BsaAI YACGTR 1 cut(s) 1402
BsaJI CCNNGG 4 cut(s) 185, 536, 661, 879
BsaXI ACNNNNNCTCC 4 cut(s) 633, 663, 1221, 1251
Bsc4I CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
Bse1I ACTGG 4 cut(s) 72, 642, 1010, 1410
Bse21I CCTNAGG 1 cut(s) 102
BseDI CCNNGG 4 cut(s) 185, 536, 661, 879
BseGI GGATG 6 cut(s) 112, 520, 546, 652, 1231, 1289
BseLI CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
BseMII CTCAG 3 cut(s) 93, 186, 643
BseNI ACTGG 4 cut(s) 72, 642, 1010, 1410
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 1 cut(s) 1337
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 2 cut(s) 663, 879
BslFI GGGAC 2 cut(s) 961, 1033
BslI CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
BsmFI GGGAC 2 cut(s) 961, 1033
BsmI GAATGC 1 cut(s) 1044
BsnI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
Bsp1286I GDGCHC 1 cut(s) 402
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 1 cut(s) 833
BspANI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
BspCNI CTCAG 3 cut(s) 94, 185, 642
BspLI GGNNCC 3 cut(s) 117, 725, 1280
BspMI ACCTGC 1 cut(s) 442
BspOI GCTAGC 1 cut(s) 711
BspPI GGATC 9 cut(s) 110, 123, 140, 330, 848, 962, 1017, 1118, 1446
BspTI CTTAAG 1 cut(s) 547
BsrI ACTGG 4 cut(s) 72, 642, 1010, 1410
BssECI CCNNGG 4 cut(s) 185, 536, 661, 879
BssNAI GTATAC 1 cut(s) 1716
BssT1I CCWWGG 2 cut(s) 185, 536
Bst1107I GTATAC 1 cut(s) 1716
Bst4CI ACNGT 3 cut(s) 961, 1214, 1348
Bst6I CTCTTC 1 cut(s) 1182
BstAFI CTTAAG 1 cut(s) 547
BstBAI YACGTR 1 cut(s) 1402
BstC8I GCNNGC 2 cut(s) 709, 1376
BstDEI CTNAG 4 cut(s) 102, 172, 629, 816
BstDSI CCRYGG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 6 cut(s) 112, 520, 546, 652, 1231, 1289
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 1733
BstNSI RCATGY 3 cut(s) 617, 800, 1309
BstSCI CCNGG 2 cut(s) 661, 878
BstSFI CTRYAG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 402
BstSNI TACGTA 1 cut(s) 1402
BstV1I GCAGC 1 cut(s) 1337
BstV2I GAAGAC 3 cut(s) 53, 362, 1302
BstX2I RGATCY 5 cut(s) 115, 335, 848, 967, 1451
BstYI RGATCY 5 cut(s) 115, 335, 848, 967, 1451
BstZ17I GTATAC 1 cut(s) 1716
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 6 cut(s) 112, 520, 546, 652, 1231, 1289
BtsIMutI CAGTG 2 cut(s) 1052, 1219
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 2 cut(s) 709, 1376
Cfr13I GGNCC 1 cut(s) 723
CseI GACGC 2 cut(s) 1030, 1733
Csp6I GTAC 5 cut(s) 313, 560, 1403, 1686, 1740
CspCI CAANNNNNGTGG 2 cut(s) 1041, 1076
CviAII CATG 9 cut(s) 186, 239, 573, 614, 797, 1025, 1294, 1306, 1616
CviQI GTAC 5 cut(s) 313, 560, 1403, 1686, 1740
DdeI CTNAG 4 cut(s) 102, 172, 629, 816
EaeI YGGCCR 1 cut(s) 1460
Eam1104I CTCTTC 1 cut(s) 1182
EarI CTCTTC 1 cut(s) 1182
EciI GGCGGA 1 cut(s) 848
Eco105I TACGTA 1 cut(s) 1402
Eco130I CCWWGG 2 cut(s) 185, 536
Eco147I AGGCCT 1 cut(s) 553
Eco57I CTGAAG 2 cut(s) 734, 1076
Eco81I CCTNAGG 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 185, 536
ErhI CCWWGG 2 cut(s) 185, 536
FaeI CATG 9 cut(s) 189, 242, 576, 617, 800, 1028, 1297, 1309, 1619
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FaqI GGGAC 2 cut(s) 961, 1033
FatI CATG 9 cut(s) 185, 238, 572, 613, 796, 1024, 1293, 1305, 1615
FauNDI CATATG 1 cut(s) 1072
FblI GTMKAC 2 cut(s) 1302, 1715
Fnu4HI GCNGC 1 cut(s) 1326
FokI GGATG 6 cut(s) 119, 527, 553, 659, 1238, 1276
Fsp4HI GCNGC 1 cut(s) 1326
FspBI CTAG 4 cut(s) 422, 708, 906, 1671
GluI GCNGC 1 cut(s) 1326
HaeIII GGCC 5 cut(s) 250, 553, 724, 1149, 1462
HapII CCGG 2 cut(s) 663, 879
HgaI GACGC 2 cut(s) 1030, 1733
Hin1II CATG 9 cut(s) 189, 242, 576, 617, 800, 1028, 1297, 1309, 1619
HincII GTYRAC 2 cut(s) 1167, 1692
HindII GTYRAC 2 cut(s) 1167, 1692
HindIII AAGCTT 4 cut(s) 352, 953, 1253, 1376
HinfI GANTC 6 cut(s) 178, 358, 627, 974, 1519, 1637
HpaII CCGG 2 cut(s) 663, 879
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 9 cut(s) 400, 478, 619, 1105, 1167, 1217, 1303, 1692, 1716
Hpy188I TCNGA 9 cut(s) 54, 175, 284, 330, 632, 853, 1014, 1571, 1651
Hpy188III TCNNGA 6 cut(s) 119, 683, 765, 826, 971, 1419
Hpy8I GTNNAC 9 cut(s) 400, 478, 619, 1105, 1167, 1217, 1303, 1692, 1716
HpyAV CCTTC 3 cut(s) 106, 823, 1504
HpyCH4III ACNGT 3 cut(s) 961, 1214, 1348
HpyCH4IV ACGT 3 cut(s) 315, 1401, 1688
HpyCH4V TGCA 7 cut(s) 273, 308, 400, 530, 796, 1042, 1325
HpyF10VI GCNNNNNNNGC 1 cut(s) 1733
HpyF3I CTNAG 4 cut(s) 102, 172, 629, 816
HpySE526I ACGT 3 cut(s) 315, 1401, 1688
Hsp92II CATG 9 cut(s) 189, 242, 576, 617, 800, 1028, 1297, 1309, 1619
LmnI GCTCC 2 cut(s) 1278, 1355
Lsp1109I GCAGC 1 cut(s) 1337
LweI GCATC 1 cut(s) 1312
MaeI CTAG 4 cut(s) 422, 708, 906, 1671
MaeII ACGT 3 cut(s) 315, 1401, 1688
MaeIII GTNAC 1 cut(s) 1342
MflI RGATCY 5 cut(s) 115, 335, 848, 967, 1451
MhlI GDGCHC 1 cut(s) 402
MlyI GAGTC 2 cut(s) 621, 983
MmeI TCCRAC 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 1479
MseI TTAA 4 cut(s) 548, 864, 912, 1263
MslI CAYNNNNRTG 4 cut(s) 465, 571, 590, 914
MspA1I CMGCKG 2 cut(s) 508, 1328
MspCI CTTAAG 1 cut(s) 547
MspI CCGG 2 cut(s) 663, 879
MspR9I CCNGG 2 cut(s) 663, 880
Mva1269I GAATGC 1 cut(s) 1044
MwoI GCNNNNNNNGC 1 cut(s) 1733
NciI CCSGG 2 cut(s) 663, 880
NcoI CCATGG 1 cut(s) 185
NdeI CATATG 1 cut(s) 1072
NheI GCTAGC 1 cut(s) 707
NlaIII CATG 9 cut(s) 189, 242, 576, 617, 800, 1028, 1297, 1309, 1619
NlaIV GGNNCC 3 cut(s) 117, 725, 1280
NspI RCATGY 3 cut(s) 617, 800, 1309
PceI AGGCCT 1 cut(s) 553
PciI ACATGT 2 cut(s) 613, 1305
PctI GAATGC 1 cut(s) 1044
PdmI GAANNNNTTC 1 cut(s) 1479
PfeI GAWTC 4 cut(s) 178, 358, 1519, 1637
PflMI CCANNNNNTGG 2 cut(s) 578, 1156
PkrI GCNGC 1 cut(s) 1327
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 2 cut(s) 621, 982
PpsI GAGTC 2 cut(s) 621, 982
Ppu21I YACGTR 1 cut(s) 1402
PscI ACATGT 2 cut(s) 613, 1305
PspN4I GGNNCC 3 cut(s) 117, 725, 1280
PspPI GGNCC 1 cut(s) 723
PsuI RGATCY 5 cut(s) 115, 335, 848, 967, 1451
PvuI CGATCG 1 cut(s) 57
PvuII CAGCTG 2 cut(s) 508, 1328
RsaI GTAC 5 cut(s) 314, 561, 1404, 1687, 1741
RsaNI GTAC 5 cut(s) 313, 560, 1403, 1686, 1740
RseI CAYNNNNRTG 4 cut(s) 465, 571, 590, 914
SaqAI TTAA 4 cut(s) 548, 864, 912, 1263
SatI GCNGC 1 cut(s) 1326
Sau96I GGNCC 1 cut(s) 723
SchI GAGTC 2 cut(s) 621, 983
ScrFI CCNGG 2 cut(s) 663, 880
SduI GDGCHC 1 cut(s) 402
SfaNI GCATC 1 cut(s) 1312
SfcI CTRYAG 1 cut(s) 783
SmiMI CAYNNNNRTG 4 cut(s) 465, 571, 590, 914
SmlI CTYRAG 2 cut(s) 547, 1367
SmoI CTYRAG 2 cut(s) 547, 1367
SnaBI TACGTA 1 cut(s) 1402
SpeI ACTAGT 1 cut(s) 421
SseBI AGGCCT 1 cut(s) 553
SsiI CCGC 1 cut(s) 833
SspI AATATT 1 cut(s) 303
SspMI CTAG 4 cut(s) 422, 708, 906, 1671
StuI AGGCCT 1 cut(s) 553
StyD4I CCNGG 2 cut(s) 661, 878
StyI CCWWGG 2 cut(s) 185, 536
TaaI ACNGT 3 cut(s) 961, 1214, 1348
TaiI ACGT 3 cut(s) 318, 1404, 1691
TaqI TCGA 3 cut(s) 24, 493, 1002
TaqII GACCGA 1 cut(s) 47
TatI WGTACW 1 cut(s) 1739
TfiI GAWTC 4 cut(s) 178, 358, 1519, 1637
Tru1I TTAA 4 cut(s) 548, 864, 912, 1263
Tru9I TTAA 4 cut(s) 548, 864, 912, 1263
TscAI CASTG 2 cut(s) 1059, 1219
TseI GCWGC 1 cut(s) 1325
TspDTI ATGAA 7 cut(s) 67, 73, 426, 432, 747, 973, 1488
TspGWI ACGGA 1 cut(s) 1288
TspRI CASTG 2 cut(s) 1059, 1219
Van91I CCANNNNNTGG 2 cut(s) 578, 1156
Vha464I CTTAAG 1 cut(s) 547
VneI GTGCAC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 5 cut(s) 453, 946, 1044, 1085, 1478
XceI RCATGY 3 cut(s) 617, 800, 1309
XmiI GTMKAC 2 cut(s) 1302, 1715
XmnI GAANNNNTTC 1 cut(s) 1479
XspI CTAG 4 cut(s) 422, 708, 906, 1671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.