Rh1AG312900

Synaptotagmin-3-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
54594231 .. 54599789
5559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG312900.1

Sequence Viewer

Length: 1533 bp
ATGGGTTTTTTGGGTACTATATTGGGGGTTTTGGGTTTTGGCATTGGAAGTTTGATTGGACTGGTGGTGGGTTTCTACCTTTTCATCTATTCAGAGCCCAAAAAAGTGAAGGACCCAGTCATCAGGCCACTACATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAAATGAAATTCCATTGTGGATAAAATGCCCTGATTACGATCGAGTAGACTGGCTAAACAAGTTTGTCTTGGATATGTGGCCTTACCTTGACAAGGGAATTTGCTCAACAATAAGAAGCATGGCACAACCTATCTTTGCAGAGTACGTTGGGAAGTATCACATTGAGGCAATTGAATTCGACGAACTGAGTCTTGGAACTCTGCCACCCATAATATATGGTCTGAAAGTTTGTGAGACTAATGAGAGAGAACTAGTCATGGAACCGGCTTTTAGGTGGGCTGGCAACCCCAACATAGTTCTGGTGGTAAGGCTGTTGTCTCTAAGAATTAAAATCCAGTTAGTGGATTTGCAAGTATTTGCAGCACCGCGGATAACTCTGAAGCCTCTTGTGCCAACTTTTCCATGTTTCGCAAACATTGTGGTTTCTTTATTGGAAAAGCCGCATGTAGATTTTGGGATGAACATATTGGGAGGGGACATCTTGTCCATTCCAGGCCTCTATCTGTATATTCAGGAGACCATCAAAAGACAAGTCGCCAGCCTCTACCTCTGGCCTCAAACACTTGATATCCCTATTCTTGATGCTTCAACAGCGGCTATAAAGAAGCCTGTTGGGATACTTCAAGTAAAGGTTGTTCGAGCGCTGAAACTTTTGAGAATGGACTTCCTTGGAACTTCGGATCCTTACGTCAAACTAAGCCTCACCGAAGATAGGTTGCCAGCAAAGAAAACCACTATTAAGATGAAATCTTTGAATCCCGAGTGGAATGAGAAGTTCAAGCTTATTGTGAAAGACCCCCATACTCAAGGACTTGAGTTACAAGTCTATGATTGGGACAAGGTTGGCAGACATGACAGATTGGGAATGCAGCTAATTCCCTTACAAGTGCTAACACCTGGAGAGACAAAGGAATTTGTGCTGGATTTGGTCAAGAACACAAATCTTAACGATCCTCAAAACAAGAAGCGTAGAGGACAACTTGTGGTGGAGCTTACTTATGTTCCTTTAAAATCAGATAGCCTTACATTGAATGGACCTGATGGTGGATATGGGAGAACTGAAAGTGGAATTAGCAAGTCATCAGATAGTGGCAAAACCCTGGATGAAGCGGGTTTCCTATCAGTGATGATCGTGGGAGCTGAGGAAGTAGAAGGGGAGCATCACAACAATCCTTATGCTGTGCTTTGCTTTAAAGGAGATGAAAAGAAAACAAGGGTGAATTTTCCCTATAATATTTATCAGCTCTTTTCATTATGTGAAGTTCACAATACAAACTTATCCAAATTAAAGTCAAAAGTAAACAGCTTTGCCACATATTCAAAGAACGCAAAACTAGCGAGATTCTTTCAGTTGCAATTTGTCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

57.61

Weight (kDa)

8.29

Isoelectric Point (pI)

30.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 67 - 247 2.8e-14 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 261 - 362 6e-25 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 508
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 535
AciI CCGC 5 cut(s) 533, 535, 608, 761, 1277
AclWI GGATC 3 cut(s) 842, 855, 1112
AcsI RAATTY 5 cut(s) 174, 264, 341, 1079, 1387
AcuI CTGAAG 1 cut(s) 566
AfaI GTAC 2 cut(s) 16, 311
AfeI AGCGCT 1 cut(s) 810
AfiI CCNNNNNNNGG 4 cut(s) 259, 508, 879, 1211
AgsI TTSAA 7 cut(s) 341, 756, 791, 922, 946, 1198, 1488
AhdI GACNNNNNGTC 1 cut(s) 649
AhlI ACTAGT 1 cut(s) 418
AjnI CCWGG 3 cut(s) 658, 1063, 1266
AjuI GAANNNNNNNTTGG 4 cut(s) 137, 169, 342, 374
AloI GAACNNNNNNTCC 2 cut(s) 832, 864
AluBI AGCT 6 cut(s) 949, 1039, 1159, 1307, 1411, 1473
AluI AGCT 6 cut(s) 949, 1039, 1159, 1307, 1411, 1473
Alw26I GTCTC 4 cut(s) 395, 489, 677, 1064
AlwI GGATC 3 cut(s) 842, 855, 1112
Ama87I CYCGRG 1 cut(s) 926
Aor51HI AGCGCT 1 cut(s) 810
AoxI GGCC 4 cut(s) 125, 245, 661, 719
ApeKI GCWGC 2 cut(s) 527, 1036
ApoI RAATTY 5 cut(s) 174, 264, 341, 1079, 1387
ArsI GACNNNNNNTTYG 2 cut(s) 684, 716
Asp700I GAANNNNTTC 1 cut(s) 162
AspLEI GCGC 1 cut(s) 811
AspS9I GGNCC 2 cut(s) 112, 1202
AsuHPI GGTGA 2 cut(s) 862, 1396
AvaI CYCGRG 1 cut(s) 926
AvaII GGWCC 2 cut(s) 112, 1202
BamHI GGATCC 1 cut(s) 847
BanII GRGCYC 1 cut(s) 99
BbvCI CCTCAGC 1 cut(s) 1308
BbvI GCAGC 2 cut(s) 539, 1048
BccI CCATC 2 cut(s) 695, 1202
BciT130I CCWGG 3 cut(s) 660, 1065, 1268
BciVI GTATCC 1 cut(s) 777
BcoDI GTCTC 4 cut(s) 395, 489, 677, 1064
BcuI ACTAGT 1 cut(s) 418
BfaI CTAG 2 cut(s) 419, 1502
BfoI RGCGCY 1 cut(s) 812
BfuI GTATCC 1 cut(s) 777
BisI GCNGC 4 cut(s) 528, 608, 762, 1037
BlsI GCNGC 4 cut(s) 529, 609, 763, 1038
Bme1390I CCNGG 3 cut(s) 660, 1065, 1268
Bme18I GGWCC 2 cut(s) 112, 1202
BmeRI GACNNNNNGTC 1 cut(s) 649
BmeT110I CYCGRG 1 cut(s) 926
BmgT120I GGNCC 2 cut(s) 112, 1202
BmiI GGNNCC 3 cut(s) 114, 429, 849
BmrFI CCNGG 3 cut(s) 660, 1065, 1268
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 739, 1336
BmuI ACTGGG 1 cut(s) 110
BpmI CTGGAG 2 cut(s) 161, 1086
Bpu10I CCTNAGC 1 cut(s) 1308
BpuEI CTTGAG 2 cut(s) 957, 1001
BsaBI GATNNNNATC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 3 cut(s) 533, 835, 1266
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 508, 879, 1211
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 5 cut(s) 66, 116, 144, 221, 502
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 3 cut(s) 660, 1065, 1268
BseDI CCNNGG 3 cut(s) 533, 835, 1266
BseGI GGATG 2 cut(s) 630, 1276
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 4 cut(s) 259, 508, 879, 1211
BseMII CTCAG 2 cut(s) 344, 1299
BseNI ACTGG 5 cut(s) 66, 116, 144, 221, 502
BseXI GCAGC 2 cut(s) 539, 1048
Bsh1236I CGCG 1 cut(s) 535
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 4 cut(s) 127, 247, 663, 721
BsiEI CGRYCG 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 926
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 2 cut(s) 656, 1016
BslI CCNNNNNNNGG 4 cut(s) 259, 508, 879, 1211
BsmAI GTCTC 4 cut(s) 395, 489, 677, 1064
BsmFI GGGAC 2 cut(s) 656, 1016
BsmI GAATGC 1 cut(s) 1038
BsnI GGCC 4 cut(s) 127, 247, 663, 721
Bso31I GGTCTC 1 cut(s) 677
BsoBI CYCGRG 1 cut(s) 926
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 4 cut(s) 205, 847, 1117, 1296
BspACI CCGC 5 cut(s) 533, 535, 608, 761, 1277
BspANI GGCC 4 cut(s) 127, 247, 663, 721
BspCNI CTCAG 2 cut(s) 345, 1300
BspFNI CGCG 1 cut(s) 535
BspLI GGNNCC 3 cut(s) 114, 429, 849
BspPI GGATC 3 cut(s) 842, 855, 1112
BspTNI GGTCTC 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 5 cut(s) 66, 116, 144, 221, 502
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 3 cut(s) 533, 835, 1266
BssMI GATC 4 cut(s) 205, 847, 1117, 1296
BssT1I CCWWGG 1 cut(s) 835
Bst2UI CCWGG 3 cut(s) 660, 1065, 1268
BstC8I GCNNGC 3 cut(s) 448, 706, 888
BstDEI CTNAG 4 cut(s) 353, 488, 863, 1308
BstDSI CCRYGG 1 cut(s) 533
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 630, 1276
BstFNI CGCG 1 cut(s) 535
BstH2I RGCGCY 1 cut(s) 812
BstHHI GCGC 1 cut(s) 811
BstKTI GATC 4 cut(s) 208, 850, 1120, 1299
BstMAI GTCTC 4 cut(s) 395, 489, 677, 1064
BstMBI GATC 4 cut(s) 205, 847, 1117, 1296
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 3 cut(s) 556, 758, 1502
BstNI CCWGG 3 cut(s) 660, 1065, 1268
BstNSI RCATGY 1 cut(s) 614
BstSCI CCNGG 3 cut(s) 658, 1063, 1266
BstUI CGCG 1 cut(s) 535
BstV1I GCAGC 2 cut(s) 539, 1048
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
BsuI GTATCC 1 cut(s) 777
BsuRI GGCC 4 cut(s) 127, 247, 663, 721
BtgI CCRYGG 1 cut(s) 533
BtsCI GGATG 2 cut(s) 630, 1276
BtsIMutI CAGTG 1 cut(s) 1296
Cac8I GCNNGC 3 cut(s) 448, 706, 888
CfoI GCGC 1 cut(s) 811
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 112, 1202
Cfr42I CCGCGG 1 cut(s) 536
Csp6I GTAC 2 cut(s) 15, 310
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 6 cut(s) 134, 286, 424, 570, 611, 1019
CviQI GTAC 2 cut(s) 15, 310
DdeI CTNAG 4 cut(s) 353, 488, 863, 1308
DpnI GATC 4 cut(s) 207, 849, 1119, 1298
DpnII GATC 4 cut(s) 205, 847, 1117, 1296
DraI TTTAAA 2 cut(s) 1176, 1360
DriI GACNNNNNGTC 1 cut(s) 649
Eam1105I GACNNNNNGTC 1 cut(s) 649
Eco130I CCWWGG 1 cut(s) 835
Eco147I AGGCCT 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 677
Eco32I GATATC 1 cut(s) 736
Eco47I GGWCC 2 cut(s) 112, 1202
Eco47III AGCGCT 1 cut(s) 810
Eco57I CTGAAG 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 926
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 3 cut(s) 658, 1063, 1266
EcoRV GATATC 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 835
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 835
FaeI CATG 6 cut(s) 137, 289, 427, 573, 614, 1022
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 2 cut(s) 656, 1016
FatI CATG 6 cut(s) 133, 285, 423, 569, 610, 1018
FauI CCCGC 1 cut(s) 1270
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 4 cut(s) 528, 608, 762, 1037
FokI GGATG 2 cut(s) 637, 1283
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 4 cut(s) 528, 608, 762, 1037
FspBI CTAG 2 cut(s) 419, 1502
GlaI GCGC 1 cut(s) 810
GluI GCNGC 4 cut(s) 528, 608, 762, 1037
GsuI CTGGAG 2 cut(s) 161, 1086
HaeII RGCGCY 1 cut(s) 812
HaeIII GGCC 4 cut(s) 127, 247, 663, 721
HapII CCGG 1 cut(s) 431
HhaI GCGC 1 cut(s) 811
Hin1II CATG 6 cut(s) 137, 289, 427, 573, 614, 1022
Hin6I GCGC 1 cut(s) 809
HinP1I GCGC 1 cut(s) 809
HindIII AAGCTT 1 cut(s) 947
HinfI GANTC 3 cut(s) 355, 922, 1509
HpaII CCGG 1 cut(s) 431
HphI GGTGA 2 cut(s) 862, 1396
Hpy166II GTNNAC 3 cut(s) 214, 1432, 1468
Hpy188I TCNGA 7 cut(s) 94, 390, 546, 847, 1183, 1252, 1532
Hpy188III TCNNGA 4 cut(s) 680, 746, 926, 1099
Hpy8I GTNNAC 3 cut(s) 214, 1432, 1468
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 2 cut(s) 103, 1313
HpyCH4IV ACGT 2 cut(s) 312, 855
HpyCH4V TGCA 5 cut(s) 305, 517, 527, 1036, 1522
HpyF10VI GCNNNNNNNGC 3 cut(s) 556, 758, 1502
HpyF3I CTNAG 4 cut(s) 353, 488, 863, 1308
HpySE526I ACGT 2 cut(s) 312, 855
Hsp92II CATG 6 cut(s) 137, 289, 427, 573, 614, 1022
HspAI GCGC 1 cut(s) 809
KspI CCGCGG 1 cut(s) 536
Kzo9I GATC 4 cut(s) 205, 847, 1117, 1296
LmnI GCTCC 3 cut(s) 1156, 1304, 1324
Lsp1109I GCAGC 2 cut(s) 539, 1048
LweI GCATC 2 cut(s) 739, 1336
MaeI CTAG 2 cut(s) 419, 1502
MaeII ACGT 2 cut(s) 312, 855
MaeIII GTNAC 2 cut(s) 149, 984
MalI GATC 4 cut(s) 207, 849, 1119, 1298
MboI GATC 4 cut(s) 205, 847, 1117, 1296
MboII GAAGA 2 cut(s) 170, 887
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 1 cut(s) 99
MlyI GAGTC 1 cut(s) 364
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 6 cut(s) 495, 906, 1113, 1175, 1359, 1454
MspA1I CMGCKG 2 cut(s) 535, 761
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 3 cut(s) 660, 1065, 1268
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 1038
MvaI CCWGG 3 cut(s) 660, 1065, 1268
MvnI CGCG 1 cut(s) 535
MwoI GCNNNNNNNGC 3 cut(s) 556, 758, 1502
NdeII GATC 4 cut(s) 205, 847, 1117, 1296
NlaIII CATG 6 cut(s) 137, 289, 427, 573, 614, 1022
NlaIV GGNNCC 3 cut(s) 114, 429, 849
NspI RCATGY 1 cut(s) 614
PceI AGGCCT 1 cut(s) 663
PctI GAATGC 1 cut(s) 1038
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 922, 1509
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 508
PkrI GCNGC 4 cut(s) 529, 609, 763, 1038
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 3 cut(s) 658, 1063, 1266
PspGI CCWGG 3 cut(s) 658, 1063, 1266
PspN4I GGNNCC 3 cut(s) 114, 429, 849
PspPI GGNCC 2 cut(s) 112, 1202
PspPPI RGGWCCY 1 cut(s) 112
PsrI GAACNNNNNNTAC 2 cut(s) 786, 818
PsuI RGATCY 1 cut(s) 847
PsyI GACNNNGTC 1 cut(s) 116
PvuI CGATCG 1 cut(s) 208
RsaI GTAC 2 cut(s) 16, 311
RsaNI GTAC 2 cut(s) 15, 310
SacII CCGCGG 1 cut(s) 536
SaqAI TTAA 6 cut(s) 495, 906, 1113, 1175, 1359, 1454
SatI GCNGC 4 cut(s) 528, 608, 762, 1037
Sau3AI GATC 4 cut(s) 205, 847, 1117, 1296
Sau96I GGNCC 2 cut(s) 112, 1202
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 3 cut(s) 660, 1065, 1268
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 2 cut(s) 739, 1336
Sfr303I CCGCGG 1 cut(s) 536
SgrBI CCGCGG 1 cut(s) 536
SinI GGWCC 2 cut(s) 112, 1202
SmlI CTYRAG 2 cut(s) 972, 980
SmoI CTYRAG 2 cut(s) 972, 980
SpeI ACTAGT 1 cut(s) 418
SseBI AGGCCT 1 cut(s) 663
SsiI CCGC 5 cut(s) 533, 535, 608, 761, 1277
SspI AATATT 1 cut(s) 1402
SspMI CTAG 2 cut(s) 419, 1502
StuI AGGCCT 1 cut(s) 663
StyD4I CCNGG 3 cut(s) 658, 1063, 1266
StyI CCWWGG 1 cut(s) 835
TaiI ACGT 2 cut(s) 315, 858
TaqI TCGA 3 cut(s) 208, 345, 805
TauI GCSGC 2 cut(s) 610, 764
TfiI GAWTC 2 cut(s) 922, 1509
Tru1I TTAA 6 cut(s) 495, 906, 1113, 1175, 1359, 1454
Tru9I TTAA 6 cut(s) 495, 906, 1113, 1175, 1359, 1454
TscAI CASTG 1 cut(s) 1296
TseI GCWGC 2 cut(s) 527, 1036
TspDTI ATGAA 8 cut(s) 73, 150, 186, 641, 926, 1287, 1383, 1407
TspRI CASTG 1 cut(s) 1296
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 508
VpaK11BI GGWCC 2 cut(s) 112, 1202
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 5 cut(s) 174, 264, 341, 1079, 1387
XceI RCATGY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 2 cut(s) 419, 1502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.