RLG00000015212

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001241
Physical Location & Seq
Forward (+)
63193443 .. 63197209
3767 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015212

Sequence Viewer

Length: 1362 bp
ATGACACAACCTATTTTCTCAGAGTACACTGGGAAGTATCACATTGAGGCCATTGAATTTGATACTTTAACTCTTGGAACGCTACCGCCCATATTTTATGGTCTGAAAGTTTATGAGACTAATGAGAAAGAATTAGTCATGGAACCGGCACTTAGATGGGCTGGAAATCCCAACATAGTTCTGGTATTTAAGTTCTTGTCTCTAAGAATTACAGTTCAGTTAGTGGATTTGCAAGTATTTGCCGCACCACGAGTAACTCTGAAACCTCTTGTGCCAATATTTCCATGTTTCTCGAGCATTTTGGTGTCTTTATTGGAGAAGCCACATGTCGATTTTGGAATTAACATACTAGGAGGGGACATCATGTGCATACCAGGCCTCTATCAGTTTGTTCAGGAGAGCATCAAGAACCATATCGCAAACCTCTACCTCTGGCCTCGGACACTTGAGATACCTATACTTGATGCTTCAGCAGCGGCTATAAAGAAGCCGGTAGGGATACTTCAAGTTAAGATTGTTCGAGCAATGAAACTTTTGAAGATGGACTTTCTGGGAACTTCGGATCCTTACGTCAAACTAAGGCTCACTGAAGATAGGCTACAAGCAAAGAAAACCACTACTAAGATGAAATCGTTGAATCCTGAGTGGAATGAGAAGTTCAAGCTTCTAGTCAAGGATCCGCAAACTCAAGGCCTTGAGTTACAAGTCTATGATTGGGACAAGGTTGGCAGACATGACAGATTGGGAATGCAGCTAGTTCCATTGAAAGTAATAAAACCTGGTGAGACAAAAGAGTTTGTGCTGGATTTGGTGAAGAACACAAACATTAACGACCCTCAAAACAAGAAATATAGGGGGCAACTTGTGCTCGAGCTTACTTTTGCTTATTTCAAATCAGACAGCATGACATCAAATGGGTCTGGTACTGGTGGATATCGGAGAACCAATAGTGAAATTAGCATTTCATCTGATGTTATTGTTGAATCCGTGGATGAAGCAGGTTTACTATCAGTTACAATTATTGGAGCTGAGGACGTAGAAGGGGCCCGTCACAACAATCCTTATGCTTTGCTGTGCTTTAAAGGAGAAGTAAAGAAGACAGAGATGGTAAAAAAATCTCGAGATCCAATTTGGAATGAAGATTTCCAGTTCATGCTTGATGAGCCTCCTTTAGATGAGAAGATCCATATTCAGGTCATGAGCAAAAGCAGAGGCCTTGGTTTCCGAGGGAAAGAATCATTGGGATATGTGGAAATTAATCTCGCTGATGTGGTGCATAATGGACGCATCAATCACAAGTACCATTTAATTGACTCCAAACATGGAAGGATGCATGTAGAGCTAAGTTGGACGAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001505 GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0005544 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0006906 GO:0006996 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008104 GO:0008150 GO:0008289 GO:0009987 GO:0010638 GO:0010646 GO:0010647 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016079 GO:0016192 GO:0017156 GO:0017157 GO:0017158 GO:0019905 GO:0023051 GO:0023052 GO:0023056 GO:0023061 GO:0030133 GO:0030276 GO:0031338 GO:0031340 GO:0031410 GO:0031982 GO:0032024 GO:0032879 GO:0032880 GO:0032940 GO:0033036 GO:0033043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045055 GO:0045921 GO:0045956 GO:0046872 GO:0046883 GO:0046887 GO:0046903 GO:0046907 GO:0048284 GO:0048489 GO:0048518 GO:0048522 GO:0048791 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070201 GO:0070382 GO:0071840 GO:0071944 GO:0090087 GO:0090174 GO:0090276 GO:0090277 GO:0097479 GO:0097480 GO:0097708 GO:0098916 GO:0099003 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:1903305 GO:1903307 GO:1903530 GO:1903532 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

454

Amino Acids

51.41

Weight (kDa)

8.44

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 13 - 153 1.7e-08 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 166 - 266 9e-26 C2 domain
C2 PF00168 334 - 436 1.3e-16 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 989
AciI CCGC 4 cut(s) 86, 243, 476, 680
AclWI GGATC 6 cut(s) 557, 570, 671, 684, 1118, 1177
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 453, 609
AfaI GTAC 3 cut(s) 26, 925, 1301
AfiI CCNNNNNNNGG 1 cut(s) 1192
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 8 cut(s) 56, 506, 538, 637, 661, 766, 892, 983
AjnI CCWGG 2 cut(s) 373, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 1223, 1255
AloI GAACNNNNNNTCC 2 cut(s) 547, 579
AluBI AGCT 5 cut(s) 664, 754, 874, 1028, 1342
AluI AGCT 5 cut(s) 664, 754, 874, 1028, 1342
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 3 cut(s) 110, 204, 779
AlwI GGATC 6 cut(s) 557, 570, 671, 684, 1118, 1177
Ama87I CYCGRG 3 cut(s) 292, 869, 1119
AoxI GGCC 6 cut(s) 48, 376, 434, 691, 1044, 1213
ApaI GGGCCC 1 cut(s) 1048
ApeKI GCWGC 2 cut(s) 473, 751
ApoI RAATTY 1 cut(s) 56
AseI ATTAAT 1 cut(s) 1257
AspS9I GGNCC 2 cut(s) 1044, 1045
AsuHPI GGTGA 2 cut(s) 794, 823
AvaI CYCGRG 3 cut(s) 292, 869, 1119
BaeGI GKGCMC 1 cut(s) 1048
BamHI GGATCC 2 cut(s) 562, 676
BanII GRGCYC 1 cut(s) 1048
BarI GAAGNNNNNNTAC 6 cut(s) 486, 518, 582, 614, 987, 1019
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 1103
Bbv12I GWGCWC 1 cut(s) 870
BbvCI CCTCAGC 1 cut(s) 1029
BbvI GCAGC 2 cut(s) 485, 763
BccI CCATC 3 cut(s) 150, 535, 1099
BciT130I CCWGG 2 cut(s) 375, 780
BciVI GTATCC 1 cut(s) 492
BcoDI GTCTC 3 cut(s) 110, 204, 779
BfaI CTAG 3 cut(s) 350, 668, 755
BfuAI ACCTGC 1 cut(s) 989
BfuI GTATCC 1 cut(s) 492
BisI GCNGC 4 cut(s) 243, 474, 477, 752
BlsI GCNGC 4 cut(s) 244, 475, 478, 753
Bme1390I CCNGG 2 cut(s) 375, 780
BmeT110I CYCGRG 3 cut(s) 292, 869, 1119
BmgT120I GGNCC 2 cut(s) 1044, 1045
BmiI GGNNCC 5 cut(s) 144, 564, 678, 1045, 1046
BmrFI CCNGG 2 cut(s) 375, 780
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 4 cut(s) 411, 454, 1296, 1320
BmuI ACTGGG 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 1103
Bpu10I CCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 3 cut(s) 467, 672, 716
BsaJI CCNNGG 4 cut(s) 437, 987, 1216, 1225
Bsc4I CCNNNNNNNGG 1 cut(s) 1192
Bse118I RCCGGY 2 cut(s) 145, 490
Bse1I ACTGG 3 cut(s) 34, 931, 1147
Bse3DI GCAATG 1 cut(s) 531
BseBI CCWGG 2 cut(s) 375, 780
BseDI CCNNGG 4 cut(s) 437, 987, 1216, 1225
BseGI GGATG 2 cut(s) 997, 1335
BseLI CCNNNNNNNGG 1 cut(s) 1192
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 3 cut(s) 33, 633, 1020
BseNI ACTGG 3 cut(s) 34, 931, 1147
BseSI GKGCMC 1 cut(s) 1048
BseXI GCAGC 2 cut(s) 485, 763
BshFI GGCC 6 cut(s) 50, 378, 436, 693, 1046, 1215
BsiHKAI GWGCWC 1 cut(s) 870
BsiHKCI CYCGRG 3 cut(s) 292, 869, 1119
BsiSI CCGG 2 cut(s) 146, 491
BslFI GGGAC 2 cut(s) 371, 731
BslI CCNNNNNNNGG 1 cut(s) 1192
BsmAI GTCTC 3 cut(s) 110, 204, 779
BsmFI GGGAC 2 cut(s) 371, 731
BsmI GAATGC 1 cut(s) 753
BsnI GGCC 6 cut(s) 50, 378, 436, 693, 1046, 1215
BsoBI CYCGRG 3 cut(s) 292, 869, 1119
Bsp120I GGGCCC 1 cut(s) 1044
Bsp1286I GDGCHC 2 cut(s) 870, 1048
Bsp143I GATC 4 cut(s) 562, 676, 1123, 1182
BspACI CCGC 4 cut(s) 86, 243, 476, 680
BspANI GGCC 6 cut(s) 50, 378, 436, 693, 1046, 1215
BspCNI CTCAG 3 cut(s) 32, 634, 1021
BspHI TCATGA 1 cut(s) 1197
BspLI GGNNCC 5 cut(s) 144, 564, 678, 1045, 1046
BspMI ACCTGC 1 cut(s) 989
BspPI GGATC 6 cut(s) 557, 570, 671, 684, 1118, 1177
BsrDI GCAATG 1 cut(s) 531
BsrFI RCCGGY 2 cut(s) 145, 490
BsrI ACTGG 3 cut(s) 34, 931, 1147
BssAI RCCGGY 2 cut(s) 145, 490
BssECI CCNNGG 4 cut(s) 437, 987, 1216, 1225
BssMI GATC 4 cut(s) 562, 676, 1123, 1182
BssSI CACGAG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 1216
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 375, 780
Bst4CI ACNGT 1 cut(s) 214
BstAPI GCANNNNNTGC 1 cut(s) 865
BstDEI CTNAG 8 cut(s) 19, 152, 203, 578, 621, 642, 1029, 1343
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 2 cut(s) 997, 1335
BstKTI GATC 4 cut(s) 565, 679, 1126, 1185
BstMAI GTCTC 3 cut(s) 110, 204, 779
BstMBI GATC 4 cut(s) 562, 676, 1123, 1182
BstMWI GCNNNNNNNGC 5 cut(s) 375, 473, 865, 1162, 1339
BstNI CCWGG 2 cut(s) 375, 780
BstNSI RCATGY 2 cut(s) 329, 1337
BstSCI CCNGG 2 cut(s) 373, 778
BstSLI GKGCMC 1 cut(s) 1048
BstV1I GCAGC 2 cut(s) 485, 763
BstV2I GAAGAC 1 cut(s) 1103
BstX2I RGATCY 4 cut(s) 562, 676, 1123, 1182
BstYI RGATCY 4 cut(s) 562, 676, 1123, 1182
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 6 cut(s) 50, 378, 436, 693, 1046, 1215
BtgI CCRYGG 1 cut(s) 987
BtsCI GGATG 2 cut(s) 997, 1335
BtsIMutI CAGTG 2 cut(s) 27, 585
BveI ACCTGC 1 cut(s) 989
CciI TCATGA 1 cut(s) 1197
Cfr10I RCCGGY 2 cut(s) 145, 490
Cfr13I GGNCC 2 cut(s) 1044, 1045
CseI GACGC 1 cut(s) 1293
CsiI ACCWGGT 1 cut(s) 778
Csp6I GTAC 3 cut(s) 25, 924, 1300
CviQI GTAC 3 cut(s) 25, 924, 1300
DdeI CTNAG 8 cut(s) 19, 152, 203, 578, 621, 642, 1029, 1343
DpnI GATC 4 cut(s) 564, 678, 1125, 1184
DpnII GATC 4 cut(s) 562, 676, 1123, 1182
DraI TTTAAA 1 cut(s) 1081
Eco130I CCWWGG 1 cut(s) 1216
Eco147I AGGCCT 3 cut(s) 378, 693, 1215
Eco24I GRGCYC 1 cut(s) 1048
Eco32I GATATC 1 cut(s) 935
Eco57I CTGAAG 2 cut(s) 453, 609
Eco88I CYCGRG 3 cut(s) 292, 869, 1119
EcoO109I RGGNCCY 1 cut(s) 1044
EcoRII CCWGG 2 cut(s) 373, 778
EcoRV GATATC 1 cut(s) 935
EcoT14I CCWWGG 1 cut(s) 1216
EcoT22I ATGCAT 1 cut(s) 1335
EcoT38I GRGCYC 1 cut(s) 1048
ErhI CCWWGG 1 cut(s) 1216
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 2 cut(s) 371, 731
Fnu4HI GCNGC 4 cut(s) 243, 474, 477, 752
FokI GGATG 2 cut(s) 1004, 1342
FriOI GRGCYC 1 cut(s) 1048
Fsp4HI GCNGC 4 cut(s) 243, 474, 477, 752
FspBI CTAG 3 cut(s) 350, 668, 755
GluI GCNGC 4 cut(s) 243, 474, 477, 752
HaeIII GGCC 6 cut(s) 50, 378, 436, 693, 1046, 1215
HapII CCGG 2 cut(s) 146, 491
HgaI GACGC 1 cut(s) 1293
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 4 cut(s) 637, 983, 1235, 1313
HpaII CCGG 2 cut(s) 146, 491
HphI GGTGA 2 cut(s) 794, 823
Hpy166II GTNNAC 2 cut(s) 27, 1004
Hpy188I TCNGA 9 cut(s) 22, 105, 261, 441, 562, 898, 939, 970, 1226
Hpy188III TCNNGA 7 cut(s) 292, 395, 406, 641, 1119, 1121, 1198
Hpy8I GTNNAC 2 cut(s) 27, 1004
HpyAV CCTTC 2 cut(s) 1034, 1320
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 2 cut(s) 570, 1035
HpyCH4V TGCA 5 cut(s) 232, 369, 751, 1276, 1333
HpyF10VI GCNNNNNNNGC 5 cut(s) 375, 473, 865, 1162, 1339
HpyF3I CTNAG 8 cut(s) 19, 152, 203, 578, 621, 642, 1029, 1343
HpySE526I ACGT 2 cut(s) 570, 1035
Kzo9I GATC 4 cut(s) 562, 676, 1123, 1182
LmnI GCTCC 1 cut(s) 1025
Lsp1109I GCAGC 2 cut(s) 485, 763
LweI GCATC 4 cut(s) 411, 454, 1296, 1320
MabI ACCWGGT 1 cut(s) 778
MaeI CTAG 3 cut(s) 350, 668, 755
MaeII ACGT 2 cut(s) 570, 1035
MaeIII GTNAC 4 cut(s) 253, 699, 1012, 1049
MalI GATC 4 cut(s) 564, 678, 1125, 1184
MboI GATC 4 cut(s) 562, 676, 1123, 1182
MboII GAAGA 6 cut(s) 550, 602, 826, 1108, 1151, 1192
MflI RGATCY 4 cut(s) 562, 676, 1123, 1182
MhlI GDGCHC 2 cut(s) 870, 1048
MluCI AATT 9 cut(s) 56, 131, 207, 339, 954, 1017, 1128, 1254, 1308
MlyI GAGTC 1 cut(s) 1307
MmeI TCCRAC 1 cut(s) 1328
Mph1103I ATGCAT 1 cut(s) 1335
MseI TTAA 8 cut(s) 68, 189, 342, 510, 828, 1080, 1257, 1307
MslI CAYNNNNRTG 2 cut(s) 154, 302
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 2 cut(s) 146, 491
MspR9I CCNGG 2 cut(s) 375, 780
Mva1269I GAATGC 1 cut(s) 753
MvaI CCWGG 2 cut(s) 375, 780
MwoI GCNNNNNNNGC 5 cut(s) 375, 473, 865, 1162, 1339
NdeII GATC 4 cut(s) 562, 676, 1123, 1182
NlaIV GGNNCC 5 cut(s) 144, 564, 678, 1045, 1046
NmuCI GTSAC 1 cut(s) 1049
NsiI ATGCAT 1 cut(s) 1335
NspI RCATGY 2 cut(s) 329, 1337
PaeR7I CTCGAG 3 cut(s) 292, 869, 1119
PagI TCATGA 1 cut(s) 1197
PceI AGGCCT 3 cut(s) 378, 693, 1215
PciI ACATGT 1 cut(s) 325
PctI GAATGC 1 cut(s) 753
PfeI GAWTC 3 cut(s) 637, 983, 1235
PkrI GCNGC 4 cut(s) 244, 475, 478, 753
PleI GAGTC 1 cut(s) 1307
PpsI GAGTC 1 cut(s) 1307
PscI ACATGT 1 cut(s) 325
PshBI ATTAAT 1 cut(s) 1257
Psp6I CCWGG 2 cut(s) 373, 778
PspGI CCWGG 2 cut(s) 373, 778
PspN4I GGNNCC 5 cut(s) 144, 564, 678, 1045, 1046
PspOMI GGGCCC 1 cut(s) 1044
PspPI GGNCC 2 cut(s) 1044, 1045
PspXI VCTCGAGB 1 cut(s) 869
PsuI RGATCY 4 cut(s) 562, 676, 1123, 1182
RsaI GTAC 3 cut(s) 26, 925, 1301
RsaNI GTAC 3 cut(s) 25, 924, 1300
RseI CAYNNNNRTG 2 cut(s) 154, 302
SaqAI TTAA 8 cut(s) 68, 189, 342, 510, 828, 1080, 1257, 1307
SatI GCNGC 4 cut(s) 243, 474, 477, 752
Sau3AI GATC 4 cut(s) 562, 676, 1123, 1182
Sau96I GGNCC 2 cut(s) 1044, 1045
SchI GAGTC 1 cut(s) 1307
ScrFI CCNGG 2 cut(s) 375, 780
SduI GDGCHC 2 cut(s) 870, 1048
SexAI ACCWGGT 1 cut(s) 778
SfaNI GCATC 4 cut(s) 411, 454, 1296, 1320
Sfr274I CTCGAG 3 cut(s) 292, 869, 1119
SlaI CTCGAG 3 cut(s) 292, 869, 1119
SmiMI CAYNNNNRTG 2 cut(s) 154, 302
SmlI CTYRAG 6 cut(s) 292, 446, 687, 695, 869, 1119
SmoI CTYRAG 6 cut(s) 292, 446, 687, 695, 869, 1119
Sse9I AATT 9 cut(s) 56, 131, 207, 339, 954, 1017, 1128, 1254, 1308
SseBI AGGCCT 3 cut(s) 378, 693, 1215
SsiI CCGC 4 cut(s) 86, 243, 476, 680
SspI AATATT 1 cut(s) 279
SspMI CTAG 3 cut(s) 350, 668, 755
StuI AGGCCT 3 cut(s) 378, 693, 1215
StyD4I CCNGG 2 cut(s) 373, 778
StyI CCWWGG 1 cut(s) 1216
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 2 cut(s) 573, 1038
TaqI TCGA 5 cut(s) 293, 330, 520, 870, 1120
TasI AATT 9 cut(s) 56, 131, 207, 339, 954, 1017, 1128, 1254, 1308
TatI WGTACW 1 cut(s) 24
TauI GCSGC 2 cut(s) 245, 479
TfiI GAWTC 3 cut(s) 637, 983, 1235
Tru1I TTAA 8 cut(s) 68, 189, 342, 510, 828, 1080, 1257, 1307
Tru9I TTAA 8 cut(s) 68, 189, 342, 510, 828, 1080, 1257, 1307
TscAI CASTG 2 cut(s) 34, 592
TseFI GTSAC 1 cut(s) 1049
TseI GCWGC 2 cut(s) 473, 751
Tsp45I GTSAC 1 cut(s) 1049
TspDTI ATGAA 6 cut(s) 542, 641, 954, 1008, 1141, 1152
TspGWI ACGGA 1 cut(s) 976
TspRI CASTG 2 cut(s) 34, 592
VspI ATTAAT 1 cut(s) 1257
XapI RAATTY 1 cut(s) 56
XceI RCATGY 2 cut(s) 329, 1337
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XhoI CTCGAG 3 cut(s) 292, 869, 1119
XspI CTAG 3 cut(s) 350, 668, 755
Zsp2I ATGCAT 1 cut(s) 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.