Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001241

Physical Location & Seq

Genomic Coordinates Reverse (-)

41935081 .. 41935638

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0303600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAGTGGAATGGGATCGATGTCGTCTTGTTCACAAGAACCAAATGGACAGCACAAGAGAGAGCGATGCGAGTATTTTCAGATGCCCCTGCACTATCCAAGGTACAAGAAATCCGACTATGAGACCATGCCGGAGTGGAAGCTTGACTGTTTGCTTAGATCTTATGGGCTACCGATCACTGGAGATGTTGAAGAGAGGAGGAAGTTAGCCATGGGAAACTTTCTGTGGTATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0005544 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0008289 GO:0008429 GO:0009898 GO:0012505 GO:0016020 GO:0016021 GO:0019897 GO:0019898 GO:0031210 GO:0031224 GO:0031226 GO:0031227 GO:0031234 GO:0031984 GO:0035091 GO:0042175 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046872 GO:0050997 GO:0070405 GO:0071944 GO:0098552 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

78

Amino Acids

9.3

Weight (kDa)

7.71

Isoelectric Point (pI)

76.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7722	PF24847	32 - 76	7.4e-27	Domain of unknown function (DUF7722)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04220 AT5G04220 AT5G04220
fragaria_vesca	FvH4_6g16032 FvH4_7g19170 FvH4_7g19170 FvH4_7g19180 FvH4_7g19180 FvH4_7g19180
malus_domestica	MD01G1107100.v1.1 MD01G1107200.v1.1 MD07G1172800.v1.1 MD07G1173000.v1.1 MD12G1117500.v1.1
prunus_persica	Prupe.2G211900_v2.0.a1 Prupe.2G212000_v2.0.a1 Prupe.2G212000_v2.0.a1 Prupe.6G235800_v2.0.a1 Prupe.6G235800_v2.0.a1 Prupe.6G235800_v2.0.a1
pyrus_communis	pycom01g13380 pycom01g13390 pycom01g13400 pycom07g16760 pycom12g11620
rosa_chinensis	RchiOBHm_Chr1g0363021 RchiOBHm_Chr1g0363031 RchiOBHm_Chr3g0469781
rosa_laevigata	RLG00000015212 RLG00000024321 RLG00000027600 RLG00000027601
rosa_multiflora	Rmu_co8490065.1_g000001 Rmu_sc0004472.1_g000002 Rmu_sc0004472.1_g000003 Rmu_sc0024252.1_g000005 Rmu_sc0036506.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293530 Rroxscaffold_6G00411490
rosa_rugosa	Rorug01G0303600 Rorug01G0303700 Rorug01G0303800 Rorug01G0303900 Rorug03G0104400
rosa_samantha	Rh1AG312800 Rh1AG312900 Rh1CG292800 Rh1CG292900 Rh3AG153500 Rh3BG177600 Rh3CG168400 Rh3DG197900 Rh3DG198000
rosa_wichuraiana	Rw1G027710 Rw1G027720 Rw3G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	22
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	235
BglII	AGATCT	1 cut(s)	158
BmsI	GCATC	2 cut(s)	56, 72
BpmI	CTGGAG	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	98, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	98, 210
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	14, 158, 174
Bsp19I	CCATGG	1 cut(s)	210
BspDI	ATCGAT	1 cut(s)	17
BspPI	GGATC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	98, 210
BssMI	GATC	3 cut(s)	14, 158, 174
BssT1I	CCWWGG	2 cut(s)	98, 210
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	210
BstKTI	GATC	3 cut(s)	17, 161, 177
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	14, 158, 174
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	127, 211
CviJI	RGCY	3 cut(s)	142, 169, 209
CviKI_1	RGCY	3 cut(s)	142, 169, 209
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	3 cut(s)	16, 160, 176
DpnII	GATC	3 cut(s)	14, 158, 174
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	2 cut(s)	98, 210
Eco31I	GGTCTC	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	98, 210
ErhI	CCWWGG	2 cut(s)	98, 210
FaeI	CATG	2 cut(s)	130, 214
FaiI	YATR	5 cut(s)	120, 128, 165, 212, 231
FatI	CATG	2 cut(s)	126, 210
FspBI	CTAG	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	2 cut(s)	130, 214
HindIII	AAGCTT	1 cut(s)	140
HpaII	CCGG	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	81, 115
Hpy8I	GTNNAC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	130, 214
Kzo9I	GATC	3 cut(s)	14, 158, 174
LpnPI	CCDG	3 cut(s)	101, 144, 165
LweI	GCATC	2 cut(s)	56, 72
MaeI	CTAG	1 cut(s)	235
MalI	GATC	3 cut(s)	16, 160, 176
MboI	GATC	3 cut(s)	14, 158, 174
MboII	GAAGA	1 cut(s)	203
MflI	RGATCY	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	189, 192
MspI	CCGG	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	14, 158, 174
NlaIII	CATG	2 cut(s)	130, 214
PsuI	RGATCY	1 cut(s)	158
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
Sau3AI	GATC	3 cut(s)	14, 158, 174
SetI	ASST	2 cut(s)	104, 144
SfaNI	GCATC	2 cut(s)	56, 72
SspMI	CTAG	1 cut(s)	235
StyI	CCWWGG	2 cut(s)	98, 210
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	184
TspRI	CASTG	1 cut(s)	184
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.