MD07G1173000.v1.1

Synaptotagmin-3-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
25055125 .. 25059581
4457 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1173000.v1.1.491

Sequence Viewer

Length: 1629 bp
ATGGGAATTTTAAGCACCTTCTTTGGAATTGTCGGCTTTGGCATTGGAAGTCTGGTGGGACTCTTGGTGGGTTTCTATCTCTTCATCTATTCAGAGCCTGAGGAAGTGAAGGATCCAGTTATCAGGCCGCTGCATGAATTAGATTCTAGCACTTTGCAAGGTCTTCTACCTGAAATACCAATGTGGGTTAAATTTTCCGATTTTGAACGAGTAGACTGGCTAAACAAGTTTCTCTTGGACATTTGGCATTACCTTGACAAGGCGCTTTGTTGTACAATAAGAAACACGGCAGAACCTATCTTCGCAGAGTACATTGGGAAGTATCGCATTGAGGCAATTGAATTTGACAAGTTAAGTCTTGGAAGTCTGCCACCCATAATCTATGGTCTAAAAGTTTATGAGACTAATGAGAATGAATTAATCATAGAACCGGCATTTAGATGGGCTGGCAATCCCAACATAGTTGTGGTTTTAAATTTGTTGTCTCTAAGAATTACGGTTCAGTTAGTGGATTTGCAAGTATTTGCAGCACCACGGGTTACTCTGAAACCTCTTGTGCCGACGTTTCCATGTTTTGCAAGCATTGTCGTGTCTTTATTGGAGAAGCCACATGTTGATTTTGGAATCAAAATATTGGGTGGGGACATCATGGCCATACCAGGCCTCTATCGGTTTGTTCAGGAGACCATTAAAAACCAAGTTGCAAGCCTCTACCTATGGCCTCGAACACTGGAAATACCTGTTCTTGATGCTTCAATAGTGGCCAAGAAGCCTGTAGGGATACTTCATGTGAAGGTCGTCCGAGCACTGAAACTTTTGAAGATGGACATCTTGGGAAGTTCCGATCCTTACGTCAAACTAAACCTTACTGAAGATAAGTTGCCCGCAAAGCAAACCACTGTCAAGATGAATAAGTTGAATCCTGAGTGGAATGAGAAGTTCAGACTTATTGTGAAAGACCCCCAAACTCAAGCTCTCGAGTTGCAACTCTATGATTGGGACAAGGTTGGCAGACATGACAAATTGGGAATGCAGTTAGTTCCTCTGAAAGTGCTAACGCCCGGTGCGACAAAGGAATTTGTGCTAGATTTGGTCAAGAACACAAATATCAATGATCCTCAAAACAAGAAGCGTAGGGGGCAAGTTATAGTGGAGCTTGCTTTTGTTCCTTTCAAATCAGAAAGCAGTAAGCATAATGGAACTAGTAATGGATATGGGAAAAGCGAAAGTGGAAAGTCATTAGAGAGTGATGAGTCCCTCAGCGGAGCTGGTGTACTATCCATTTTGATCCAGGGAGCTGAGGACGTAGAAGGGGAGCATCACAGCAATCCTTATGCTTTGCTTTGCTTTAGAGGAGAAGTAAAGAAAACTAAGATGATAAGAAAATCCCGCAATCCACTTTGGAATGAAGATTTCCAATTTATGCTTGATGAGCCTCCTTTGCATGACAAGATTCGTATCGAGCTCAAGAGCAAAAGCAGAGCCCTAATCCGAGCAAAGGAATCACTAGGATACGTGGAAATTAATCTTGCCGATGTGGTACACAACGGACGCATCAATGAAAAGTTCCATTTGATTGACTCCCACAATGGAAGGATACATGCAGAGCTAAGTTGGACAAAGGCCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

543

Amino Acids

61.22

Weight (kDa)

7.68

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 67 - 247 2.4e-13 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 260 - 359 1.9e-23 C2 domain
C2 PF00168 425 - 524 4e-14 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AciI CCGC 4 cut(s) 128, 885, 1263, 1390
AclWI GGATC 5 cut(s) 107, 120, 839, 1109, 1282
AcoI YGGCCR 2 cut(s) 651, 762
AcsI RAATTY 5 cut(s) 6, 191, 341, 475, 1076
AcuI CTGAAG 1 cut(s) 891
AfaI GTAC 4 cut(s) 274, 311, 1275, 1542
AfiI CCNNNNNNNGG 2 cut(s) 259, 1498
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 6 cut(s) 206, 341, 756, 820, 919, 1174
AhlI ACTAGT 1 cut(s) 1202
AjnI CCWGG 2 cut(s) 658, 1290
AluBI AGCT 6 cut(s) 974, 1156, 1268, 1298, 1465, 1609
AluI AGCT 6 cut(s) 974, 1156, 1268, 1298, 1465, 1609
Alw21I GWGCWC 2 cut(s) 808, 1467
Alw26I GTCTC 3 cut(s) 395, 489, 677
AlwI GGATC 5 cut(s) 107, 120, 839, 1109, 1282
AlwNI CAGNNNCTG 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 977
AoxI GGCC 6 cut(s) 125, 651, 661, 719, 762, 1623
ApeKI GCWGC 2 cut(s) 130, 527
ApoI RAATTY 5 cut(s) 6, 191, 341, 475, 1076
AseI ATTAAT 2 cut(s) 419, 1524
AspLEI GCGC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 1062
AvaI CYCGRG 1 cut(s) 977
AxyI CCTNAGG 1 cut(s) 99
BalI TGGCCA 2 cut(s) 653, 764
BamHI GGATCC 1 cut(s) 112
BanII GRGCYC 2 cut(s) 1467, 1486
BarI GAAGNNNNNNTAC 2 cut(s) 768, 800
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 808, 1467
BbvCI CCTCAGC 2 cut(s) 1259, 1299
BbvI GCAGC 2 cut(s) 117, 539
BccI CCATC 2 cut(s) 435, 817
BceAI ACGGC 1 cut(s) 303
BciT130I CCWGG 2 cut(s) 660, 1292
BciVI GTATCC 3 cut(s) 774, 1505, 1590
BcnI CCSGG 1 cut(s) 1062
BcoDI GTCTC 3 cut(s) 395, 489, 677
BcuI ACTAGT 1 cut(s) 1202
BfaI CTAG 4 cut(s) 147, 1085, 1203, 1508
BfmI CTRYAG 1 cut(s) 774
BfoI RGCGCY 1 cut(s) 266
BfuI GTATCC 3 cut(s) 774, 1505, 1590
BisI GCNGC 3 cut(s) 128, 131, 528
BlsI GCNGC 3 cut(s) 129, 132, 529
Bme1390I CCNGG 3 cut(s) 660, 1062, 1292
BmeT110I CYCGRG 1 cut(s) 977
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 3 cut(s) 660, 1062, 1292
BmsI GCATC 3 cut(s) 739, 1327, 1563
BpiI GAAGAC 1 cut(s) 155
Bpu10I CCTNAGC 2 cut(s) 1259, 1299
BpuEI CTTGAG 2 cut(s) 954, 1451
BpuMI CCSGG 1 cut(s) 1062
BsaAI YACGTR 1 cut(s) 1516
BsaBI GATNNNNATC 2 cut(s) 827, 1457
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 2 cut(s) 533, 1291
BsaXI ACNNNNNCTCC 2 cut(s) 1257, 1287
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 1498
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 3 cut(s) 116, 221, 735
Bse21I CCTNAGG 1 cut(s) 99
Bse8I GATNNNNATC 2 cut(s) 827, 1457
BseBI CCWGG 2 cut(s) 660, 1292
BseDI CCNNGG 2 cut(s) 533, 1291
BseJI GATNNNNATC 2 cut(s) 827, 1457
BseLI CCNNNNNNNGG 2 cut(s) 259, 1498
BseMII CTCAG 4 cut(s) 90, 915, 1273, 1290
BseNI ACTGG 3 cut(s) 116, 221, 735
BseRI GAGGAG 1 cut(s) 1368
BseXI GCAGC 2 cut(s) 117, 539
BshFI GGCC 6 cut(s) 127, 653, 663, 721, 764, 1625
BsiHKAI GWGCWC 2 cut(s) 808, 1467
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 2 cut(s) 431, 1062
BslFI GGGAC 4 cut(s) 72, 656, 1013, 1240
BslI CCNNNNNNNGG 2 cut(s) 259, 1498
BsmAI GTCTC 3 cut(s) 395, 489, 677
BsmFI GGGAC 4 cut(s) 72, 656, 1013, 1240
BsmI GAATGC 1 cut(s) 1035
BsnI GGCC 6 cut(s) 127, 653, 663, 721, 764, 1625
Bso31I GGTCTC 1 cut(s) 677
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 3 cut(s) 808, 1467, 1486
Bsp1407I TGTACA 1 cut(s) 272
Bsp143I GATC 4 cut(s) 112, 844, 1114, 1287
BspACI CCGC 4 cut(s) 128, 885, 1263, 1390
BspANI GGCC 6 cut(s) 127, 653, 663, 721, 764, 1625
BspCNI CTCAG 4 cut(s) 91, 916, 1272, 1291
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 5 cut(s) 107, 120, 839, 1109, 1282
BspTNI GGTCTC 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 272
BsrI ACTGG 3 cut(s) 116, 221, 735
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 533, 1291
BssMI GATC 4 cut(s) 112, 844, 1114, 1287
Bst2UI CCWGG 2 cut(s) 660, 1292
Bst4CI ACNGT 2 cut(s) 499, 901
Bst6I CTCTTC 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 272
BstBAI YACGTR 1 cut(s) 1516
BstC8I GCNNGC 5 cut(s) 448, 580, 706, 885, 1158
BstDEI CTNAG 7 cut(s) 99, 488, 924, 1259, 1299, 1371, 1610
BstDSI CCRYGG 1 cut(s) 533
BstENI CCTNNNNNAGG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 4 cut(s) 115, 847, 1117, 1290
BstMAI GTCTC 3 cut(s) 395, 489, 677
BstMBI GATC 4 cut(s) 112, 844, 1114, 1287
BstMWI GCNNNNNNNGC 4 cut(s) 889, 1138, 1432, 1441
BstNI CCWGG 2 cut(s) 660, 1292
BstNSI RCATGY 2 cut(s) 614, 1604
BstSCI CCNGG 3 cut(s) 658, 1060, 1290
BstSFI CTRYAG 1 cut(s) 774
BstV1I GCAGC 2 cut(s) 117, 539
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
Bsu36I CCTNAGG 1 cut(s) 99
BsuI GTATCC 3 cut(s) 774, 1505, 1590
BsuRI GGCC 6 cut(s) 127, 653, 663, 721, 764, 1625
BtgI CCRYGG 1 cut(s) 533
BtsIMutI CAGTG 3 cut(s) 728, 806, 897
Cac8I GCNNGC 5 cut(s) 448, 580, 706, 885, 1158
CaiI CAGNNNCTG 1 cut(s) 98
CfoI GCGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 430
CseI GACGC 1 cut(s) 1560
Csp6I GTAC 4 cut(s) 273, 310, 1274, 1541
CviAII CATG 8 cut(s) 134, 570, 611, 649, 788, 1016, 1445, 1601
CviQI GTAC 4 cut(s) 273, 310, 1274, 1541
DdeI CTNAG 7 cut(s) 99, 488, 924, 1259, 1299, 1371, 1610
DpnI GATC 4 cut(s) 114, 846, 1116, 1289
DpnII GATC 4 cut(s) 112, 844, 1114, 1287
DraI TTTAAA 1 cut(s) 474
EaeI YGGCCR 2 cut(s) 651, 762
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 1465
Eco147I AGGCCT 2 cut(s) 663, 1625
Eco24I GRGCYC 2 cut(s) 1467, 1486
Eco31I GGTCTC 1 cut(s) 677
Eco53kI GAGCTC 1 cut(s) 1465
Eco57I CTGAAG 1 cut(s) 891
Eco81I CCTNAGG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 977
EcoICRI GAGCTC 1 cut(s) 1465
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 658, 1290
EcoT38I GRGCYC 2 cut(s) 1467, 1486
FaeI CATG 8 cut(s) 137, 573, 614, 652, 791, 1019, 1448, 1604
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 4 cut(s) 72, 656, 1013, 1240
FatI CATG 8 cut(s) 133, 569, 610, 648, 787, 1015, 1444, 1600
FauI CCCGC 2 cut(s) 892, 1397
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 128, 131, 528
FriOI GRGCYC 2 cut(s) 1467, 1486
Fsp4HI GCNGC 3 cut(s) 128, 131, 528
FspBI CTAG 4 cut(s) 147, 1085, 1203, 1508
GlaI GCGC 1 cut(s) 264
GluI GCNGC 3 cut(s) 128, 131, 528
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 6 cut(s) 127, 653, 663, 721, 764, 1625
HapII CCGG 2 cut(s) 431, 1062
HgaI GACGC 1 cut(s) 1560
HhaI GCGC 1 cut(s) 265
Hin1II CATG 8 cut(s) 137, 573, 614, 652, 791, 1019, 1448, 1604
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 8 cut(s) 60, 143, 624, 919, 1253, 1453, 1502, 1580
HpaII CCGG 2 cut(s) 431, 1062
Hpy166II GTNNAC 3 cut(s) 214, 1274, 1543
Hpy188I TCNGA 9 cut(s) 94, 199, 546, 803, 844, 944, 1047, 1180, 1493
Hpy188III TCNNGA 7 cut(s) 680, 746, 904, 923, 977, 1096, 1468
Hpy8I GTNNAC 3 cut(s) 214, 1274, 1543
Hpy99I CGWCG 1 cut(s) 565
HpyAV CCTTC 5 cut(s) 28, 103, 787, 1304, 1587
HpyCH4III ACNGT 2 cut(s) 499, 901
HpyCH4IV ACGT 4 cut(s) 563, 852, 1305, 1515
HpyF10VI GCNNNNNNNGC 4 cut(s) 889, 1138, 1432, 1441
HpyF3I CTNAG 7 cut(s) 99, 488, 924, 1259, 1299, 1371, 1610
HpySE526I ACGT 4 cut(s) 563, 852, 1305, 1515
Hsp92II CATG 8 cut(s) 137, 573, 614, 652, 791, 1019, 1448, 1604
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 4 cut(s) 112, 844, 1114, 1287
LmnI GCTCC 4 cut(s) 1153, 1265, 1295, 1315
Lsp1109I GCAGC 2 cut(s) 117, 539
LweI GCATC 3 cut(s) 739, 1327, 1563
MaeI CTAG 4 cut(s) 147, 1085, 1203, 1508
MaeII ACGT 4 cut(s) 563, 852, 1305, 1515
MaeIII GTNAC 1 cut(s) 538
MalI GATC 4 cut(s) 114, 846, 1116, 1289
MboI GATC 4 cut(s) 112, 844, 1114, 1287
MboII GAAGA 6 cut(s) 73, 155, 292, 832, 884, 1421
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 3 cut(s) 808, 1467, 1486
MlsI TGGCCA 2 cut(s) 653, 764
MluNI TGGCCA 2 cut(s) 653, 764
MlyI GAGTC 3 cut(s) 54, 1262, 1574
MmeI TCCRAC 1 cut(s) 1595
Mox20I TGGCCA 2 cut(s) 653, 764
MscI TGGCCA 2 cut(s) 653, 764
MseI TTAA 7 cut(s) 11, 189, 353, 419, 473, 690, 1524
MslI CAYNNNNRTG 3 cut(s) 439, 464, 587
Msp20I TGGCCA 2 cut(s) 653, 764
MspA1I CMGCKG 2 cut(s) 130, 1263
MspI CCGG 2 cut(s) 431, 1062
MspR9I CCNGG 3 cut(s) 660, 1062, 1292
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 1035
MvaI CCWGG 2 cut(s) 660, 1292
MwoI GCNNNNNNNGC 4 cut(s) 889, 1138, 1432, 1441
NciI CCSGG 1 cut(s) 1062
NdeII GATC 4 cut(s) 112, 844, 1114, 1287
NlaIII CATG 8 cut(s) 137, 573, 614, 652, 791, 1019, 1448, 1604
NlaIV GGNNCC 1 cut(s) 114
NspI RCATGY 2 cut(s) 614, 1604
PaeR7I CTCGAG 1 cut(s) 977
PceI AGGCCT 2 cut(s) 663, 1625
PciI ACATGT 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 1064
PctI GAATGC 1 cut(s) 1035
PfeI GAWTC 5 cut(s) 143, 624, 919, 1453, 1502
PkrI GCNGC 3 cut(s) 129, 132, 529
PleI GAGTC 3 cut(s) 54, 1261, 1574
PpsI GAGTC 3 cut(s) 54, 1261, 1574
Ppu21I YACGTR 1 cut(s) 1516
PscI ACATGT 1 cut(s) 610
PshBI ATTAAT 2 cut(s) 419, 1524
Psp124BI GAGCTC 1 cut(s) 1467
Psp6I CCWGG 2 cut(s) 658, 1290
PspGI CCWGG 2 cut(s) 658, 1290
PspN4I GGNNCC 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 4 cut(s) 274, 311, 1275, 1542
RsaNI GTAC 4 cut(s) 273, 310, 1274, 1541
RseI CAYNNNNRTG 3 cut(s) 439, 464, 587
SacI GAGCTC 1 cut(s) 1467
SaqAI TTAA 7 cut(s) 11, 189, 353, 419, 473, 690, 1524
SatI GCNGC 3 cut(s) 128, 131, 528
Sau3AI GATC 4 cut(s) 112, 844, 1114, 1287
SchI GAGTC 3 cut(s) 54, 1262, 1574
ScrFI CCNGG 3 cut(s) 660, 1062, 1292
SduI GDGCHC 3 cut(s) 808, 1467, 1486
SfaNI GCATC 3 cut(s) 739, 1327, 1563
SfcI CTRYAG 1 cut(s) 774
Sfr274I CTCGAG 1 cut(s) 977
SlaI CTCGAG 1 cut(s) 977
SmiMI CAYNNNNRTG 3 cut(s) 439, 464, 587
SmlI CTYRAG 3 cut(s) 969, 977, 1466
SmoI CTYRAG 3 cut(s) 969, 977, 1466
SpeI ACTAGT 1 cut(s) 1202
SseBI AGGCCT 2 cut(s) 663, 1625
SsiI CCGC 4 cut(s) 128, 885, 1263, 1390
SspI AATATT 1 cut(s) 633
SspMI CTAG 4 cut(s) 147, 1085, 1203, 1508
SstI GAGCTC 1 cut(s) 1467
StuI AGGCCT 2 cut(s) 663, 1625
StyD4I CCNGG 3 cut(s) 658, 1060, 1290
TaaI ACNGT 2 cut(s) 499, 901
TaiI ACGT 4 cut(s) 566, 855, 1308, 1518
TaqI TCGA 3 cut(s) 724, 978, 1461
TatI WGTACW 3 cut(s) 272, 309, 1273
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 5 cut(s) 143, 624, 919, 1453, 1502
Tru1I TTAA 7 cut(s) 11, 189, 353, 419, 473, 690, 1524
Tru9I TTAA 7 cut(s) 11, 189, 353, 419, 473, 690, 1524
TscAI CASTG 3 cut(s) 735, 813, 904
TseI GCWGC 2 cut(s) 130, 527
TspDTI ATGAA 7 cut(s) 73, 150, 429, 776, 923, 1422, 1575
TspGWI ACGGA 1 cut(s) 1563
TspRI CASTG 3 cut(s) 735, 813, 904
VspI ATTAAT 2 cut(s) 419, 1524
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 5 cut(s) 6, 191, 341, 475, 1076
XceI RCATGY 2 cut(s) 614, 1604
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XhoI CTCGAG 1 cut(s) 977
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 4 cut(s) 147, 1085, 1203, 1508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.