Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001241

Physical Location & Seq

Genomic Coordinates Reverse (-)

41941506 .. 41943311

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0303800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGAGGAGGCGGCATGGAATCGGTGTCGACGTCTAGGCATCAACAGAATGGTCATCACAGCGAGCGATGTGGGTATTTTCAGATGCCTCTGCACTATCCAAGGTACACCAAATCGGACTACGAGACCATGCCGGAGTGGAGGCTCGACTGTTTGCTTAAAGAGTATGGGCTGCCGATCTCCGGAGACGTTGAGCAGAAGAGGAAGTTTGCCATGGGAGCCTTCTTGTGGTCGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0005544 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0008289 GO:0008429 GO:0009898 GO:0012505 GO:0016020 GO:0016021 GO:0019897 GO:0019898 GO:0031210 GO:0031224 GO:0031226 GO:0031227 GO:0031234 GO:0031984 GO:0035091 GO:0042175 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046872 GO:0050997 GO:0070405 GO:0071944 GO:0098552 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

79

Amino Acids

9.31

Weight (kDa)

7.82

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7722	PF24847	33 - 78	2.5e-30	Domain of unknown function (DUF7722)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04220 AT5G04220 AT5G04220
fragaria_vesca	FvH4_6g16032 FvH4_7g19170 FvH4_7g19170 FvH4_7g19180 FvH4_7g19180 FvH4_7g19180
malus_domestica	MD01G1107100.v1.1 MD01G1107200.v1.1 MD07G1172800.v1.1 MD07G1173000.v1.1 MD12G1117500.v1.1
prunus_persica	Prupe.2G211900_v2.0.a1 Prupe.2G212000_v2.0.a1 Prupe.2G212000_v2.0.a1 Prupe.6G235800_v2.0.a1 Prupe.6G235800_v2.0.a1 Prupe.6G235800_v2.0.a1
pyrus_communis	pycom01g13380 pycom01g13390 pycom01g13400 pycom07g16760 pycom12g11620
rosa_chinensis	RchiOBHm_Chr1g0363021 RchiOBHm_Chr1g0363031 RchiOBHm_Chr3g0469781
rosa_laevigata	RLG00000015212 RLG00000024321 RLG00000027600 RLG00000027601
rosa_multiflora	Rmu_co8490065.1_g000001 Rmu_sc0004472.1_g000002 Rmu_sc0004472.1_g000003 Rmu_sc0024252.1_g000005 Rmu_sc0036506.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293530 Rroxscaffold_6G00411490
rosa_rugosa	Rorug01G0303600 Rorug01G0303700 Rorug01G0303800 Rorug01G0303900 Rorug03G0104400
rosa_samantha	Rh1AG312800 Rh1AG312900 Rh1CG292800 Rh1CG292900 Rh3AG153500 Rh3BG177600 Rh3CG168400 Rh3DG197900 Rh3DG198000
rosa_wichuraiana	Rw1G027710 Rw1G027720 Rw3G014470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AccI	GTMKAC	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	182
AciI	CCGC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	2 cut(s)	107, 236
AfiI	CCNNNNNNNGG	2 cut(s)	182, 228
Alw26I	GTCTC	2 cut(s)	119, 180
Aor13HI	TCCGGA	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	119, 180
BfaI	CTAG	2 cut(s)	36, 238
BisI	GCNGC	2 cut(s)	13, 173
BlsI	GCNGC	2 cut(s)	14, 174
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	2 cut(s)	49, 75
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	101, 213
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 228
BseAI	TCCGGA	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	101, 213
BseLI	CCNNNNNNNGG	2 cut(s)	182, 228
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	134, 183
BslI	CCNNNNNNNGG	2 cut(s)	182, 228
BsmAI	GTCTC	2 cut(s)	119, 180
BsmBI	CGTCTC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	177
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	1 cut(s)	12
BspEI	TCCGGA	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	101, 213
BssMI	GATC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	2 cut(s)	101, 213
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	213
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	119, 180
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	106, 235
CviAII	CATG	3 cut(s)	16, 130, 214
CviJI	RGCY	3 cut(s)	145, 172, 221
CviKI_1	RGCY	3 cut(s)	145, 172, 221
CviQI	GTAC	2 cut(s)	106, 235
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco130I	CCWWGG	2 cut(s)	101, 213
Eco31I	GGTCTC	1 cut(s)	119
EcoT14I	CCWWGG	2 cut(s)	101, 213
ErhI	CCWWGG	2 cut(s)	101, 213
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	3 cut(s)	19, 133, 217
FaiI	YATR	4 cut(s)	17, 131, 168, 215
FatI	CATG	3 cut(s)	15, 129, 213
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	13, 173
Fsp4HI	GCNGC	2 cut(s)	13, 173
FspBI	CTAG	2 cut(s)	36, 238
GluI	GCNGC	2 cut(s)	13, 173
HapII	CCGG	2 cut(s)	134, 183
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	19, 133, 217
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	134, 183
Hpy166II	GTNNAC	2 cut(s)	30, 108
Hpy188I	TCNGA	2 cut(s)	84, 118
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	2 cut(s)	30, 108
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	32, 189
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpySE526I	ACGT	2 cut(s)	32, 189
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	19, 133, 217
Kpn2I	TCCGGA	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	2 cut(s)	147, 196
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	2 cut(s)	49, 75
MaeI	CTAG	2 cut(s)	36, 238
MaeII	ACGT	2 cut(s)	32, 189
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	1 cut(s)	211
MnlI	CCTC	3 cut(s)	99, 135, 195
MroI	TCCGGA	1 cut(s)	182
MseI	TTAA	1 cut(s)	159
MspI	CCGG	2 cut(s)	134, 183
MwoI	GCNNNNNNNGC	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	3 cut(s)	19, 133, 217
NlaIV	GGNNCC	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	14, 174
PspN4I	GGNNCC	1 cut(s)	220
RsaI	GTAC	2 cut(s)	107, 236
RsaNI	GTAC	2 cut(s)	106, 235
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	13, 173
Sau3AI	GATC	1 cut(s)	177
SetI	ASST	3 cut(s)	35, 107, 192
SfaNI	GCATC	2 cut(s)	49, 75
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	2 cut(s)	36, 238
StyI	CCWWGG	2 cut(s)	101, 213
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	2 cut(s)	35, 192
TaqI	TCGA	2 cut(s)	29, 147
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	2 cut(s)	36, 238
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.