Prupe.2G212000_v2.0.a1

Synaptotagmin-3-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
24412561 .. 24417778
5218 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G212000.1

Sequence Viewer

Length: 1629 bp
ATGGGACTTTTCAGCACTCTCTTGGGGATTTTTGGTTTTGGCATTGGAAGTCTTCTTGGACTCTTGGTGGGTTTCTTCCTTTTCATCTATTCAGAGCCTGAGGAAGTGAAGGATCCAGTCGTCAGGCCACTGCATGAATTAGATTCATGTACTTTGCAAGGTCTTCTACCTGAAATTCCAATGTGGGTAAAATTCAGCGACTATGATCGAGTAGACTGGCTAAACAAGTTTCTCTTTGATATGTGGCCATACCTTGACAAGGCAATTTGTAGTACAATAAGAAGCATAGCACAACCTATCTTCAAAGAGTACATAGGGAAGTTTCACATTGAGGCAATTGAGTTTGACAAGTTAAGTCTTGGAACTATGCCGCCCATAATATATGGTCTAAAAGTTTATGAGACTAATGAGAACGAATTAGTTATGGAACCGGCATTTAGATGGGCTGGTAATCCCAACATAGTTTTGGTGTTAAAGTTGTTGTCTCTGAGAATTATGATTCAGTTAGTGGATTTGCAAGTATTTGCAGCGCCACGGGTAACTTTAAAGCCTCTCGTGCCGACTTTTCCATGTTTTGCAAGCATTGTGGTGTCTTTATTGGAGAAGCCACATGTAGATTTTGGAATCAAAATATTGGGAGGGGATATCATGTCCATACCAGGCCTCTATCGGTTTGTTCAGGAGAACATCAAAAAACAAGTCGCAAGCCTCTATCTCTGGCCTCAAACACTTGAAATACCTGTTCTTGATGCTTCAGTAGTGGCCAAGAAGCCTGTAGGTATACTTCATGTCAAAGTTGTTCGAGCAATGAAACTTTTGAAGATGGACATTTTGGGAAGTTCTGATCCTTACGTCAAACTAAGCCTTACTGAAGATAGGTTGCCAGCAAAGAAAACCACAGTCAAGATGAAGAAGTTGAATCCAGAATGGAATGAGAAGTTCAAGCTTCTTGTGAAGGATCCTGAAACTCAAGCCCTCGAGTTACAACTTTATGACTGGGACAAGGTTGGCAGACATGACAAATTGGGAATGCAGTTGGTTCCTTTAAAAGTGCTAACACCCGGTTTGACAAAGGAACTTGTGCTGGATTTGGTCAAGAACACAAATATCAATGATCCTCAAAACAAGAAGCGTAGGGGACAAATTGTGGTGGAGCTTGCTTTCGTTCCTTTCAAATCAGAAAGCAGTAAGCTTAATGGTAATGAATATGGGAGAAGTGAAAGTGGAATTAGTAGGTCCTCAGACAGTTCCGAGTCCCTCGGTGGAGCAGGTTTACTATCTGTTCTGATCCAGGGAGCTGAGGATGTAGAAGGGCAGCATCACAACAATCCTTTTGCTTTGCTTTGCTTCAGAGGTGAAGAAAAGAAAACTAAGATGGTGAAAAAAAGTCGTGATCCACTTTGGAATGAAGATTTCCAATTTATGCTTGATGAGCCTCCTTTACAAGACAAGATTTATATTGAGGTCATGAGCAAAAGCAGAGCCATTTTCCGAGCGAAGGAATCGTTGGGGTACGTAGAAATCAATCTCGCCGATGTTGTACACAATGGACGCATCAACCAAAAGTACCATTTGATTGACTCACACAACGGAAGGATACACATAGAGCTAAGTTGGACAAAGGCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

543

Amino Acids

61.46

Weight (kDa)

8.09

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1259
AccI GTMKAC 2 cut(s) 213, 781
AciI CCGC 1 cut(s) 371
AclWI GGATC 8 cut(s) 107, 120, 839, 953, 966, 1109, 1282, 1388
AcoI YGGCCR 2 cut(s) 245, 762
AcsI RAATTY 2 cut(s) 174, 191
AcuI CTGAAG 3 cut(s) 738, 891, 1333
AfaI GTAC 6 cut(s) 151, 274, 311, 1514, 1542, 1568
AfiI CCNNNNNNNGG 2 cut(s) 259, 1498
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 6 cut(s) 304, 734, 820, 919, 943, 1174
AjnI CCWGG 2 cut(s) 658, 1290
AjuI GAANNNNNNNTTGG 2 cut(s) 1490, 1522
AluBI AGCT 5 cut(s) 946, 1156, 1192, 1298, 1609
AluI AGCT 5 cut(s) 946, 1156, 1192, 1298, 1609
Alw26I GTCTC 2 cut(s) 395, 489
AlwI GGATC 8 cut(s) 107, 120, 839, 953, 966, 1109, 1282, 1388
AlwNI CAGNNNCTG 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 977
AoxI GGCC 5 cut(s) 125, 245, 661, 719, 762
ApeKI GCWGC 2 cut(s) 527, 1315
ApoI RAATTY 2 cut(s) 174, 191
ArsI GACNNNNNNTTYG 2 cut(s) 684, 716
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 1236
AsuC2I CCSGG 1 cut(s) 1062
AsuHPI GGTGA 2 cut(s) 1367, 1390
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 1 cut(s) 1236
AxyI CCTNAGG 1 cut(s) 99
BalI TGGCCA 2 cut(s) 247, 764
BamHI GGATCC 2 cut(s) 112, 958
BarI GAAGNNNNNNTAC 2 cut(s) 768, 800
BauI CACGAG 1 cut(s) 554
BbsI GAAGAC 2 cut(s) 44, 155
BbvCI CCTCAGC 1 cut(s) 1299
BbvI GCAGC 2 cut(s) 539, 1327
BccI CCATC 3 cut(s) 435, 817, 1369
BciT130I CCWGG 2 cut(s) 660, 1292
BciVI GTATCC 1 cut(s) 1590
BcnI CCSGG 1 cut(s) 1062
BcoDI GTCTC 2 cut(s) 395, 489
BfmI CTRYAG 1 cut(s) 774
BfoI RGCGCY 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 1259
BfuI GTATCC 1 cut(s) 1590
BisI GCNGC 3 cut(s) 371, 528, 1316
BlsI GCNGC 3 cut(s) 372, 529, 1317
Bme1390I CCNGG 3 cut(s) 660, 1062, 1292
Bme18I GGWCC 1 cut(s) 1236
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 1 cut(s) 1236
BmiI GGNNCC 4 cut(s) 114, 429, 960, 1041
BmrFI CCNGG 3 cut(s) 660, 1062, 1292
BmrI ACTGGG 1 cut(s) 1006
BmsI GCATC 3 cut(s) 739, 1327, 1563
BmuI ACTGGG 1 cut(s) 1006
BpiI GAAGAC 2 cut(s) 44, 155
Bpu10I CCTNAGC 1 cut(s) 1299
BpuEI CTTGAG 1 cut(s) 954
BpuMI CCSGG 1 cut(s) 1062
BsaAI YACGTR 1 cut(s) 1516
BsaJI CCNNGG 3 cut(s) 533, 1258, 1291
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 1498
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 3 cut(s) 116, 221, 1001
Bse21I CCTNAGG 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 813
BseBI CCWGG 2 cut(s) 660, 1292
BseDI CCNNGG 3 cut(s) 533, 1258, 1291
BseGI GGATG 1 cut(s) 1309
BseLI CCNNNNNNNGG 2 cut(s) 259, 1498
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 4 cut(s) 90, 479, 1254, 1290
BseNI ACTGG 3 cut(s) 116, 221, 1001
BseXI GCAGC 2 cut(s) 539, 1327
BshFI GGCC 5 cut(s) 127, 247, 663, 721, 764
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 2 cut(s) 431, 1062
BslFI GGGAC 4 cut(s) 18, 1013, 1152, 1240
BslI CCNNNNNNNGG 2 cut(s) 259, 1498
BsmAI GTCTC 2 cut(s) 395, 489
BsmFI GGGAC 4 cut(s) 18, 1013, 1152, 1240
BsmI GAATGC 1 cut(s) 1035
BsnI GGCC 5 cut(s) 127, 247, 663, 721, 764
BsoBI CYCGRG 1 cut(s) 977
Bsp1407I TGTACA 1 cut(s) 1540
Bsp143I GATC 7 cut(s) 112, 205, 844, 958, 1114, 1287, 1393
BspACI CCGC 1 cut(s) 371
BspANI GGCC 5 cut(s) 127, 247, 663, 721, 764
BspCNI CTCAG 4 cut(s) 91, 480, 1253, 1291
BspHI TCATGA 1 cut(s) 1467
BspLI GGNNCC 4 cut(s) 114, 429, 960, 1041
BspMI ACCTGC 1 cut(s) 1259
BspPI GGATC 8 cut(s) 107, 120, 839, 953, 966, 1109, 1282, 1388
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 1540
BsrI ACTGG 3 cut(s) 116, 221, 1001
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 3 cut(s) 533, 1258, 1291
BssMI GATC 7 cut(s) 112, 205, 844, 958, 1114, 1287, 1393
BssNAI GTATAC 1 cut(s) 782
BssSI CACGAG 1 cut(s) 554
Bst1107I GTATAC 1 cut(s) 782
Bst2BI CACGAG 1 cut(s) 554
Bst2UI CCWGG 2 cut(s) 660, 1292
Bst4CI ACNGT 2 cut(s) 901, 1247
BstAUI TGTACA 1 cut(s) 1540
BstBAI YACGTR 1 cut(s) 1516
BstC8I GCNNGC 4 cut(s) 580, 706, 885, 1158
BstDEI CTNAG 7 cut(s) 99, 488, 860, 1240, 1299, 1371, 1610
BstDSI CCRYGG 1 cut(s) 533
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 1309
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 7 cut(s) 115, 208, 847, 961, 1117, 1290, 1396
BstMAI GTCTC 2 cut(s) 395, 489
BstMBI GATC 7 cut(s) 112, 205, 844, 958, 1114, 1287, 1393
BstMWI GCNNNNNNNGC 2 cut(s) 556, 1432
BstNI CCWGG 2 cut(s) 660, 1292
BstNSI RCATGY 1 cut(s) 614
BstSCI CCNGG 3 cut(s) 658, 1060, 1290
BstSFI CTRYAG 1 cut(s) 774
BstSNI TACGTA 1 cut(s) 1516
BstV1I GCAGC 2 cut(s) 539, 1327
BstV2I GAAGAC 2 cut(s) 44, 155
BstX2I RGATCY 2 cut(s) 112, 958
BstYI RGATCY 2 cut(s) 112, 958
BstZ17I GTATAC 1 cut(s) 782
Bsu36I CCTNAGG 1 cut(s) 99
BsuI GTATCC 1 cut(s) 1590
BsuRI GGCC 5 cut(s) 127, 247, 663, 721, 764
BtgI CCRYGG 1 cut(s) 533
BtsCI GGATG 1 cut(s) 1309
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
BveI ACCTGC 1 cut(s) 1259
Cac8I GCNNGC 4 cut(s) 580, 706, 885, 1158
CaiI CAGNNNCTG 1 cut(s) 98
CciI TCATGA 1 cut(s) 1467
CfoI GCGC 1 cut(s) 532
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 1236
CseI GACGC 1 cut(s) 1560
Csp6I GTAC 6 cut(s) 150, 273, 310, 1513, 1541, 1567
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 8 cut(s) 134, 147, 570, 611, 649, 788, 1016, 1468
CviQI GTAC 6 cut(s) 150, 273, 310, 1513, 1541, 1567
DdeI CTNAG 7 cut(s) 99, 488, 860, 1240, 1299, 1371, 1610
DpnI GATC 7 cut(s) 114, 207, 846, 960, 1116, 1289, 1395
DpnII GATC 7 cut(s) 112, 205, 844, 958, 1114, 1287, 1393
DraI TTTAAA 2 cut(s) 546, 1047
EaeI YGGCCR 2 cut(s) 245, 762
Eco105I TACGTA 1 cut(s) 1516
Eco147I AGGCCT 1 cut(s) 663
Eco32I GATATC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 1236
Eco57I CTGAAG 3 cut(s) 738, 891, 1333
Eco81I CCTNAGG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 977
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 1236
EcoRII CCWGG 2 cut(s) 658, 1290
EcoRV GATATC 1 cut(s) 646
FaeI CATG 8 cut(s) 137, 150, 573, 614, 652, 791, 1019, 1471
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 4 cut(s) 18, 1013, 1152, 1240
FatI CATG 8 cut(s) 133, 146, 569, 610, 648, 787, 1015, 1467
FblI GTMKAC 2 cut(s) 213, 781
Fnu4HI GCNGC 3 cut(s) 371, 528, 1316
FokI GGATG 1 cut(s) 1316
Fsp4HI GCNGC 3 cut(s) 371, 528, 1316
GlaI GCGC 1 cut(s) 531
GluI GCNGC 3 cut(s) 371, 528, 1316
HaeII RGCGCY 1 cut(s) 533
HaeIII GGCC 5 cut(s) 127, 247, 663, 721, 764
HapII CCGG 2 cut(s) 431, 1062
HgaI GACGC 1 cut(s) 1560
HhaI GCGC 1 cut(s) 532
Hin1II CATG 8 cut(s) 137, 150, 573, 614, 652, 791, 1019, 1471
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HindIII AAGCTT 2 cut(s) 944, 1190
HinfI GANTC 8 cut(s) 60, 143, 499, 624, 919, 1253, 1502, 1580
HpaII CCGG 2 cut(s) 431, 1062
HphI GGTGA 2 cut(s) 1367, 1390
Hpy166II GTNNAC 4 cut(s) 214, 782, 1274, 1543
Hpy188I TCNGA 9 cut(s) 94, 489, 844, 1180, 1243, 1252, 1287, 1352, 1493
Hpy188III TCNNGA 8 cut(s) 680, 746, 904, 923, 962, 1096, 1391, 1468
Hpy8I GTNNAC 4 cut(s) 214, 782, 1274, 1543
HpyAV CCTTC 5 cut(s) 103, 949, 1304, 1492, 1587
HpyCH4III ACNGT 2 cut(s) 901, 1247
HpyCH4IV ACGT 2 cut(s) 852, 1515
HpyCH4V TGCA 6 cut(s) 133, 157, 517, 527, 578, 1033
HpyF10VI GCNNNNNNNGC 2 cut(s) 556, 1432
HpyF3I CTNAG 7 cut(s) 99, 488, 860, 1240, 1299, 1371, 1610
HpySE526I ACGT 2 cut(s) 852, 1515
Hsp92II CATG 8 cut(s) 137, 150, 573, 614, 652, 791, 1019, 1471
HspAI GCGC 1 cut(s) 530
Kzo9I GATC 7 cut(s) 112, 205, 844, 958, 1114, 1287, 1393
LmnI GCTCC 3 cut(s) 1153, 1265, 1295
Lsp1109I GCAGC 2 cut(s) 539, 1327
LweI GCATC 3 cut(s) 739, 1327, 1563
MaeII ACGT 2 cut(s) 852, 1515
MaeIII GTNAC 2 cut(s) 538, 981
MalI GATC 7 cut(s) 114, 207, 846, 960, 1116, 1289, 1395
MboI GATC 7 cut(s) 112, 205, 844, 958, 1114, 1287, 1393
MboII GAAGA 9 cut(s) 44, 67, 155, 292, 832, 884, 922, 1370, 1421
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 2 cut(s) 112, 958
MlsI TGGCCA 2 cut(s) 247, 764
MluNI TGGCCA 2 cut(s) 247, 764
MlyI GAGTC 3 cut(s) 54, 1262, 1574
MmeI TCCRAC 1 cut(s) 1595
Mox20I TGGCCA 2 cut(s) 247, 764
MscI TGGCCA 2 cut(s) 247, 764
MseI TTAA 5 cut(s) 353, 473, 545, 1046, 1194
MslI CAYNNNNRTG 2 cut(s) 439, 587
Msp20I TGGCCA 2 cut(s) 247, 764
MspI CCGG 2 cut(s) 431, 1062
MspR9I CCNGG 3 cut(s) 660, 1062, 1292
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 1035
MvaI CCWGG 2 cut(s) 660, 1292
MwoI GCNNNNNNNGC 2 cut(s) 556, 1432
NciI CCSGG 1 cut(s) 1062
NdeII GATC 7 cut(s) 112, 205, 844, 958, 1114, 1287, 1393
NlaIII CATG 8 cut(s) 137, 150, 573, 614, 652, 791, 1019, 1471
NlaIV GGNNCC 4 cut(s) 114, 429, 960, 1041
NspI RCATGY 1 cut(s) 614
PaeR7I CTCGAG 1 cut(s) 977
PagI TCATGA 1 cut(s) 1467
PceI AGGCCT 1 cut(s) 663
PciI ACATGT 1 cut(s) 610
PctI GAATGC 1 cut(s) 1035
PfeI GAWTC 5 cut(s) 143, 499, 624, 919, 1502
PkrI GCNGC 3 cut(s) 372, 529, 1317
PleI GAGTC 3 cut(s) 54, 1261, 1574
PpsI GAGTC 3 cut(s) 54, 1261, 1574
Ppu21I YACGTR 1 cut(s) 1516
PpuMI RGGWCCY 1 cut(s) 1236
PscI ACATGT 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 1236
Psp6I CCWGG 2 cut(s) 658, 1290
PspGI CCWGG 2 cut(s) 658, 1290
PspN4I GGNNCC 4 cut(s) 114, 429, 960, 1041
PspPI GGNCC 1 cut(s) 1236
PspPPI RGGWCCY 1 cut(s) 1236
PspXI VCTCGAGB 1 cut(s) 977
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 112, 958
RsaI GTAC 6 cut(s) 151, 274, 311, 1514, 1542, 1568
RsaNI GTAC 6 cut(s) 150, 273, 310, 1513, 1541, 1567
RseI CAYNNNNRTG 2 cut(s) 439, 587
SaqAI TTAA 5 cut(s) 353, 473, 545, 1046, 1194
SatI GCNGC 3 cut(s) 371, 528, 1316
Sau3AI GATC 7 cut(s) 112, 205, 844, 958, 1114, 1287, 1393
Sau96I GGNCC 1 cut(s) 1236
SchI GAGTC 3 cut(s) 54, 1262, 1574
ScrFI CCNGG 3 cut(s) 660, 1062, 1292
SfaNI GCATC 3 cut(s) 739, 1327, 1563
SfcI CTRYAG 1 cut(s) 774
Sfr274I CTCGAG 1 cut(s) 977
SinI GGWCC 1 cut(s) 1236
SlaI CTCGAG 1 cut(s) 977
SmiMI CAYNNNNRTG 2 cut(s) 439, 587
SmlI CTYRAG 2 cut(s) 969, 977
SmoI CTYRAG 2 cut(s) 969, 977
SnaBI TACGTA 1 cut(s) 1516
SseBI AGGCCT 1 cut(s) 663
SsiI CCGC 1 cut(s) 371
SspI AATATT 1 cut(s) 633
StuI AGGCCT 1 cut(s) 663
StyD4I CCNGG 3 cut(s) 658, 1060, 1290
TaaI ACNGT 2 cut(s) 901, 1247
TaiI ACGT 2 cut(s) 855, 1518
TaqI TCGA 3 cut(s) 208, 802, 978
TatI WGTACW 4 cut(s) 149, 272, 309, 1540
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 5 cut(s) 143, 499, 624, 919, 1502
Tru1I TTAA 5 cut(s) 353, 473, 545, 1046, 1194
Tru9I TTAA 5 cut(s) 353, 473, 545, 1046, 1194
TscAI CASTG 1 cut(s) 135
TseI GCWGC 2 cut(s) 527, 1315
TspDTI ATGAA 8 cut(s) 73, 135, 150, 776, 824, 923, 1218, 1422
TspGWI ACGGA 1 cut(s) 1605
TspRI CASTG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 1236
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 2 cut(s) 174, 191
XceI RCATGY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XhoI CTCGAG 1 cut(s) 977
XmiI GTMKAC 2 cut(s) 213, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.