pycom01g13390

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001241
Physical Location & Seq
Forward (+)
13863707 .. 13866071
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13390.3

Sequence Viewer

Length: 804 bp
ATGGGAGTTTTAAGCACTTTCTTGGGATTCATCGGCTTTGGCATTGGAAGTCTGGTGGGACTCTTGGTGGGTTTCTATCTTTTCATCTATTCAGAGCCTGAGGAAGTGAAGGATCCAATTATCAGGCCGCTGCACGAATTAGATTCTAGTACTTTGCAAGGTCTTCTACCTGAAATACCAATGTGGGTTAAATTTTCCGACTATGAACGAGTTGACTGGTTAAACAAGTTTCTCGTTGACATGTGGCCTTACCTTCACAAGGCCATTTGTTCTACAATAAGAAGCATGGCAAAACCTATATTCGCTGAGTATATAGGGAAGTATCACATTGAGGATATTGAATTTGACAAGTTGAGTCTTGGAAATCTGCCACCTATAATTTATGGTCTAAAAGTTTATGAGACTAATGAGAATGAATTAGTCATGGAACCAGCATTTAGATGGGCTGGCAACCCCAACATAGTTCTGGTGTTGAAGTTGTTGTCTCTAAGAATTACAGTTCAGTTAGTGGATTTGCAAGTATTTGCAGCACCACGGGTAACTCTGAAACCTCTAGTGCCGACTTTTCCATGTTTTGCAAGCATTGTGGTGTCTTTATTGGAGAAGCCACATGTCGATTTTGGAATCAAGGTATTGGGAGGGGACATCATGGCCATACCAGGCCTTTATTGGTTTGTTCAGGAGACCATCAAAAAACAAGTCGCAGGCCTCTATCTATGGCCTCAAACACTGGAAATACCTGTTCTTGACGCTTCAACAGTGGCCAAGAAGCCTGTAGGGATCCTTCATGTAAAGGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001505 GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0005544 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0006906 GO:0006996 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008104 GO:0008150 GO:0008289 GO:0009987 GO:0010638 GO:0010646 GO:0010647 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016079 GO:0016192 GO:0017156 GO:0017157 GO:0017158 GO:0019905 GO:0023051 GO:0023052 GO:0023056 GO:0023061 GO:0030133 GO:0030276 GO:0031338 GO:0031340 GO:0031410 GO:0031982 GO:0032024 GO:0032879 GO:0032880 GO:0032940 GO:0033036 GO:0033043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045055 GO:0045921 GO:0045956 GO:0046872 GO:0046883 GO:0046887 GO:0046903 GO:0046907 GO:0048284 GO:0048489 GO:0048518 GO:0048522 GO:0048791 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070201 GO:0070382 GO:0071840 GO:0071944 GO:0090087 GO:0090174 GO:0090276 GO:0090277 GO:0097479 GO:0097480 GO:0097708 GO:0098916 GO:0099003 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:1903305 GO:1903307 GO:1903530 GO:1903532 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

268

Amino Acids

30.1

Weight (kDa)

5.77

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 128
AclWI GGATC 4 cut(s) 107, 120, 775, 788
AcoI YGGCCR 2 cut(s) 651, 762
AcsI RAATTY 2 cut(s) 191, 341
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 2 cut(s) 240, 610
AgsI TTSAA 3 cut(s) 341, 475, 756
AjnI CCWGG 1 cut(s) 658
Alw26I GTCTC 3 cut(s) 395, 489, 677
AlwI GGATC 4 cut(s) 107, 120, 775, 788
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 8 cut(s) 125, 245, 261, 651, 661, 706, 719, 762
ApeKI GCWGC 2 cut(s) 130, 527
ApoI RAATTY 2 cut(s) 191, 341
ArsI GACNNNNNNTTYG 2 cut(s) 684, 716
AxyI CCTNAGG 1 cut(s) 99
BalI TGGCCA 2 cut(s) 653, 764
BamHI GGATCC 2 cut(s) 112, 780
BarI GAAGNNNNNNTAC 2 cut(s) 768, 800
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 117, 539
BccI CCATC 2 cut(s) 435, 695
BciT130I CCWGG 1 cut(s) 660
BcoDI GTCTC 3 cut(s) 395, 489, 677
BfaI CTAG 2 cut(s) 147, 554
BfmI CTRYAG 1 cut(s) 774
BisI GCNGC 3 cut(s) 128, 131, 528
BlsI GCNGC 3 cut(s) 129, 132, 529
BmcAI AGTACT 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 660
BmiI GGNNCC 3 cut(s) 114, 429, 782
BmrFI CCNGG 1 cut(s) 660
BpiI GAAGAC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 1 cut(s) 533
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 221, 735
Bse21I CCTNAGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 1 cut(s) 533
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 90, 297
BseNI ACTGG 2 cut(s) 221, 735
BseXI GCAGC 2 cut(s) 117, 539
BsgI GTGCAG 1 cut(s) 116
BshFI GGCC 8 cut(s) 127, 247, 263, 653, 663, 708, 721, 764
BslFI GGGAC 2 cut(s) 72, 656
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 3 cut(s) 395, 489, 677
BsmFI GGGAC 2 cut(s) 72, 656
BsnI GGCC 8 cut(s) 127, 247, 263, 653, 663, 708, 721, 764
Bso31I GGTCTC 1 cut(s) 677
Bsp143I GATC 2 cut(s) 112, 780
BspACI CCGC 1 cut(s) 128
BspANI GGCC 8 cut(s) 127, 247, 263, 653, 663, 708, 721, 764
BspCNI CTCAG 2 cut(s) 91, 298
BspLI GGNNCC 3 cut(s) 114, 429, 782
BspPI GGATC 4 cut(s) 107, 120, 775, 788
BspTNI GGTCTC 1 cut(s) 677
BsrI ACTGG 2 cut(s) 221, 735
BssECI CCNNGG 1 cut(s) 533
BssMI GATC 2 cut(s) 112, 780
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 2 cut(s) 499, 760
BstC8I GCNNGC 3 cut(s) 448, 580, 706
BstDEI CTNAG 3 cut(s) 99, 306, 488
BstDSI CCRYGG 1 cut(s) 533
BstENI CCTNNNNNAGG 1 cut(s) 257
BstKTI GATC 2 cut(s) 115, 783
BstMAI GTCTC 3 cut(s) 395, 489, 677
BstMBI GATC 2 cut(s) 112, 780
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 2 cut(s) 244, 614
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 1 cut(s) 774
BstV1I GCAGC 2 cut(s) 117, 539
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 2 cut(s) 112, 780
BstYI RGATCY 2 cut(s) 112, 780
Bsu36I CCTNAGG 1 cut(s) 99
BsuRI GGCC 8 cut(s) 127, 247, 263, 653, 663, 708, 721, 764
BtgI CCRYGG 1 cut(s) 533
BtsIMutI CAGTG 2 cut(s) 728, 765
Cac8I GCNNGC 3 cut(s) 448, 580, 706
CaiI CAGNNNCTG 1 cut(s) 98
CseI GACGC 1 cut(s) 758
Csp6I GTAC 1 cut(s) 150
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 7 cut(s) 241, 286, 424, 570, 611, 649, 788
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 3 cut(s) 99, 306, 488
DpnI GATC 2 cut(s) 114, 782
DpnII GATC 2 cut(s) 112, 780
EaeI YGGCCR 2 cut(s) 651, 762
Eco147I AGGCCT 2 cut(s) 663, 708
Eco31I GGTCTC 1 cut(s) 677
Eco81I CCTNAGG 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 658
FaeI CATG 7 cut(s) 244, 289, 427, 573, 614, 652, 791
FaqI GGGAC 2 cut(s) 72, 656
FatI CATG 7 cut(s) 240, 285, 423, 569, 610, 648, 787
Fnu4HI GCNGC 3 cut(s) 128, 131, 528
Fsp4HI GCNGC 3 cut(s) 128, 131, 528
FspBI CTAG 2 cut(s) 147, 554
GluI GCNGC 3 cut(s) 128, 131, 528
HaeIII GGCC 8 cut(s) 127, 247, 263, 653, 663, 708, 721, 764
HgaI GACGC 1 cut(s) 758
Hin1II CATG 7 cut(s) 244, 289, 427, 573, 614, 652, 791
HincII GTYRAC 2 cut(s) 214, 238
HindII GTYRAC 2 cut(s) 214, 238
HinfI GANTC 5 cut(s) 27, 60, 143, 355, 624
Hpy166II GTNNAC 2 cut(s) 214, 238
Hpy188I TCNGA 3 cut(s) 94, 199, 546
Hpy188III TCNNGA 2 cut(s) 680, 746
Hpy8I GTNNAC 2 cut(s) 214, 238
HpyAV CCTTC 3 cut(s) 103, 263, 794
HpyCH4III ACNGT 2 cut(s) 499, 760
HpyCH4V TGCA 5 cut(s) 133, 157, 517, 527, 578
HpyF3I CTNAG 3 cut(s) 99, 306, 488
Hsp92II CATG 7 cut(s) 244, 289, 427, 573, 614, 652, 791
Kzo9I GATC 2 cut(s) 112, 780
Lsp1109I GCAGC 2 cut(s) 117, 539
MaeI CTAG 2 cut(s) 147, 554
MaeIII GTNAC 1 cut(s) 538
MalI GATC 2 cut(s) 114, 782
MboI GATC 2 cut(s) 112, 780
MboII GAAGA 1 cut(s) 155
MflI RGATCY 2 cut(s) 112, 780
MlsI TGGCCA 2 cut(s) 653, 764
MluCI AATT 7 cut(s) 117, 137, 191, 341, 378, 416, 492
MluNI TGGCCA 2 cut(s) 653, 764
MlyI GAGTC 2 cut(s) 54, 364
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 6 cut(s) 94, 325, 561, 632, 719, 732
Mox20I TGGCCA 2 cut(s) 653, 764
MscI TGGCCA 2 cut(s) 653, 764
MseI TTAA 3 cut(s) 11, 189, 221
MslI CAYNNNNRTG 2 cut(s) 439, 587
Msp20I TGGCCA 2 cut(s) 653, 764
MspA1I CMGCKG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 660
NdeII GATC 2 cut(s) 112, 780
NlaIII CATG 7 cut(s) 244, 289, 427, 573, 614, 652, 791
NlaIV GGNNCC 3 cut(s) 114, 429, 782
NspI RCATGY 2 cut(s) 244, 614
PceI AGGCCT 2 cut(s) 663, 708
PciI ACATGT 2 cut(s) 240, 610
PfeI GAWTC 3 cut(s) 27, 143, 624
PkrI GCNGC 3 cut(s) 129, 132, 529
PleI GAGTC 2 cut(s) 54, 363
PpsI GAGTC 2 cut(s) 54, 363
PscI ACATGT 2 cut(s) 240, 610
Psp6I CCWGG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 3 cut(s) 114, 429, 782
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 112, 780
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
RseI CAYNNNNRTG 2 cut(s) 439, 587
SaqAI TTAA 3 cut(s) 11, 189, 221
SatI GCNGC 3 cut(s) 128, 131, 528
Sau3AI GATC 2 cut(s) 112, 780
ScaI AGTACT 1 cut(s) 151
SchI GAGTC 2 cut(s) 54, 364
ScrFI CCNGG 1 cut(s) 660
SetI ASST 9 cut(s) 163, 172, 255, 298, 376, 553, 633, 742, 798
SfcI CTRYAG 1 cut(s) 774
SmiMI CAYNNNNRTG 2 cut(s) 439, 587
Sse9I AATT 7 cut(s) 117, 137, 191, 341, 378, 416, 492
SseBI AGGCCT 2 cut(s) 663, 708
SsiI CCGC 1 cut(s) 128
SspMI CTAG 2 cut(s) 147, 554
StuI AGGCCT 2 cut(s) 663, 708
StyD4I CCNGG 1 cut(s) 658
TaaI ACNGT 2 cut(s) 499, 760
TaqI TCGA 1 cut(s) 615
TasI AATT 7 cut(s) 117, 137, 191, 341, 378, 416, 492
TatI WGTACW 1 cut(s) 149
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 3 cut(s) 27, 143, 624
Tru1I TTAA 3 cut(s) 11, 189, 221
Tru9I TTAA 3 cut(s) 11, 189, 221
TscAI CASTG 2 cut(s) 735, 765
TseI GCWGC 2 cut(s) 130, 527
TspDTI ATGAA 5 cut(s) 19, 73, 219, 429, 776
TspRI CASTG 2 cut(s) 735, 765
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 2 cut(s) 191, 341
XceI RCATGY 2 cut(s) 244, 614
XcmI CCANNNNNNNNNTGG 3 cut(s) 438, 463, 666
XspI CTAG 2 cut(s) 147, 554
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.