Rroxscaffold_6G00411490

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001241
Physical Location & Seq
Forward (+)
34025535 .. 34029556
4022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411490.1

Sequence Viewer

Length: 1707 bp
ATGAGACATCTGTATTTCATATTCGAGTTTATTGGATTTCTTATTGGGTTTCCGATCGGTCTTCTACTGGGTTTCTTCATATTCATATACTCATCACAGCCTGAGGATGTGAAGGATCCTGATATAAAATCACTAAATGAGTGTGATCCAAACTCTCTGGTTGATCTTTTCTCAGAGATTCCTCCATGGGTGAAGCACCCTGACTTTGAAAGAATTGACTGGTTGAACAAGGCTTTACATGATATGTGGCCTTACCTTGATAAGGCAATATGCAAGATTATCAGAGAAACAGCAGAGCCAATATTTGCAGAGTACGTTGGGAAATATCAGATAAGATCCCTAGGATTTCAGAGCTTGAATCTTGGAAGTCTTCCTCCTACAATTTATGGTATTAGAGTGCACGAAACCAATGAAAATGAACTAGTAATTGAACCTGCTATTAGATGGGCAGGAATTCCACACATAACTGTTGTGGTAAAAATATTGTCAGTTCGACTTATAGTTCAGCTGATGGATGTCCAAGTATTTGCAACGCCAAGGATAATCTTAAGGCCTCTTGTACCAACATTCCCATGTTTTGGAAACATAACAATGACTTTGATAGACAAGCCACATGTGGACTTTGGACTCAGATTACTGGGAGGGGATGTTATGGCAATCCCCGGTTTCTATCAATTTGTTCAGGAATATATAAGAAAACAAGTTGCTAGCCTTTATTTATGGCCCCAAACTTTGAACATACCAATTCTTCAGGGTTCATTATCAGGAACTTTAAAGAAGCCTGTAGGCATACTGCATGTCAAGGTTGTAAGAGCTAAGAAACTCTTGAAGGCGGACATCATAGGAAGATCTGATCCTTATGTTAAAATCAAACTAACCGGGGAGAGGCTTCCATCAAAGAAAACTAGCATTAAGATGAGGAACTTGAACCCTGAATGGAATGAGAATTTCAAGCTTACAGTCAAAGATCCAGAGTCCCAATTCATTCAGTTCAATGTTTTCGACTGGGATCAGATTGGGACGCATGACCCTTTGGGAATGCAAATTCTTCCACTGAAGTTGCTAACTCCACATGACACACAAGAATTTACGCTTGATTTAGTGAACAGCACAAACCCTTATGATCCTCAAAACAAGAAAAAAAGAGGCCAACTTATGGTGGAGTTGACATATAATCCTTTTATAGAAGAGAGTGGTAGTGGAATATATAACAGTGGACCTTTGGATGGAGATCAAGTGGTAGATGGAAAAAAGCTTGGAATTAAGAGTCAAATTAGGAGCCGAAAGCCATCCATGTCCGTAGACATGTCTTCACAAATAGATGCAGCTGGTCTGCTTTTGGTTACAGTTCAAGGAGCAGAAGAACTTGAGAGCAAGCTTTACGATAACCCTAATCCTTACGTACTGGTTCGGTTTTCAGGAGAAAAGAGGAAAACCAAGATGATAAAGAGATCCCATCGGCCGTATTGGAATGAAGAATTTCAGTTTGTGGTAGAAGAGGCGACTTTGAAGGAGAAGATTCGTTTTGAAGTAAAGAGTAAGAAAAGAAACCTTTTCGCTTATCGTTTCCGAAAAAAGGAACTGTTGGGGTACGTTGACATCAATTTTAGTGATGTGGTGTACAATGGACGCATTAGAGGCAAGTACAATTTGATTAACTCGAAAAATGCAGTCATACATATCGAGTTGCAGTGGAGCACCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

568

Amino Acids

65.33

Weight (kDa)

9.1

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 68 - 249 2.4e-17 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 263 - 363 2.3e-24 C2 domain
C2 PF00168 445 - 551 8.5e-17 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 442
AccB7I CCANNNNNTGG 2 cut(s) 578, 1156
AccI GTMKAC 1 cut(s) 1302
AciI CCGC 1 cut(s) 833
AclWI GGATC 9 cut(s) 110, 123, 140, 330, 848, 962, 1017, 1118, 1446
AcoI YGGCCR 1 cut(s) 1460
AcsI RAATTY 5 cut(s) 453, 946, 1044, 1085, 1478
AcuI CTGAAG 2 cut(s) 734, 1076
AfaI GTAC 6 cut(s) 314, 561, 1404, 1592, 1622, 1646
AfiI CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
AflII CTTAAG 1 cut(s) 547
AflIII ACRYGT 2 cut(s) 613, 1305
AhlI ACTAGT 1 cut(s) 421
AluBI AGCT 7 cut(s) 354, 508, 815, 955, 1255, 1328, 1378
AluI AGCT 7 cut(s) 354, 508, 815, 955, 1255, 1328, 1378
Alw21I GWGCWC 2 cut(s) 402, 1700
Alw44I GTGCAC 1 cut(s) 398
AlwI GGATC 9 cut(s) 110, 123, 140, 330, 848, 962, 1017, 1118, 1446
AoxI GGCC 5 cut(s) 248, 551, 722, 1147, 1460
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 1325
ApoI RAATTY 5 cut(s) 453, 946, 1044, 1085, 1478
Asp700I GAANNNNTTC 1 cut(s) 1479
AspA2I CCTAGG 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 723, 1217
AsuC2I CCSGG 2 cut(s) 663, 880
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 707
AvaII GGWCC 1 cut(s) 1217
AvrII CCTAGG 1 cut(s) 340
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 402
BamHI GGATCC 1 cut(s) 115
BbsI GAAGAC 3 cut(s) 53, 362, 1302
Bbv12I GWGCWC 2 cut(s) 402, 1700
BbvI GCAGC 1 cut(s) 1337
BccI CCATC 7 cut(s) 438, 505, 901, 1220, 1238, 1297, 1464
BceAI ACGGC 1 cut(s) 1447
BcnI CCSGG 2 cut(s) 663, 880
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 4 cut(s) 341, 422, 708, 906
BfmI CTRYAG 1 cut(s) 783
BfrI CTTAAG 1 cut(s) 547
BfuAI ACCTGC 1 cut(s) 442
BglII AGATCT 1 cut(s) 848
BisI GCNGC 1 cut(s) 1326
BlnI CCTAGG 1 cut(s) 340
BlsI GCNGC 1 cut(s) 1327
Bme1390I CCNGG 2 cut(s) 663, 880
Bme18I GGWCC 1 cut(s) 1217
BmgT120I GGNCC 2 cut(s) 723, 1217
BmiI GGNNCC 3 cut(s) 117, 725, 1280
BmrFI CCNGG 2 cut(s) 663, 880
BmrI ACTGGG 3 cut(s) 77, 647, 1015
BmsI GCATC 1 cut(s) 1312
BmtI GCTAGC 1 cut(s) 711
BmuI ACTGGG 3 cut(s) 77, 647, 1015
BpiI GAAGAC 3 cut(s) 53, 362, 1302
BpuEI CTTGAG 1 cut(s) 1388
BpuMI CCSGG 2 cut(s) 663, 880
BsaAI YACGTR 1 cut(s) 1402
BsaBI GATNNNNATC 1 cut(s) 1230
BsaJI CCNNGG 5 cut(s) 185, 340, 536, 661, 879
BsaXI ACNNNNNCTCC 4 cut(s) 633, 663, 1221, 1251
Bsc4I CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
Bse1I ACTGG 5 cut(s) 72, 224, 642, 1010, 1410
Bse21I CCTNAGG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 1230
BseDI CCNNGG 5 cut(s) 185, 340, 536, 661, 879
BseGI GGATG 5 cut(s) 112, 520, 652, 1231, 1289
BseJI GATNNNNATC 1 cut(s) 1230
BseLI CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
BseMII CTCAG 3 cut(s) 93, 186, 643
BseNI ACTGG 5 cut(s) 72, 224, 642, 1010, 1410
BseSI GKGCMC 1 cut(s) 402
BseX3I CGGCCG 1 cut(s) 1460
BseXI GCAGC 1 cut(s) 1337
Bsh1285I CGRYCG 2 cut(s) 57, 1463
BshFI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
BsiEI CGRYCG 2 cut(s) 57, 1463
BsiHKAI GWGCWC 2 cut(s) 402, 1700
BsiSI CCGG 2 cut(s) 663, 879
BslFI GGGAC 2 cut(s) 961, 1033
BslI CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
BsmFI GGGAC 2 cut(s) 961, 1033
BsmI GAATGC 1 cut(s) 1044
BsnI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
Bsp1286I GDGCHC 2 cut(s) 402, 1700
Bsp1407I TGTACA 1 cut(s) 1620
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 1 cut(s) 833
BspANI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
BspCNI CTCAG 3 cut(s) 94, 185, 642
BspLI GGNNCC 3 cut(s) 117, 725, 1280
BspMI ACCTGC 1 cut(s) 442
BspOI GCTAGC 1 cut(s) 711
BspPI GGATC 9 cut(s) 110, 123, 140, 330, 848, 962, 1017, 1118, 1446
BspTI CTTAAG 1 cut(s) 547
BsrGI TGTACA 1 cut(s) 1620
BsrI ACTGG 5 cut(s) 72, 224, 642, 1010, 1410
BssECI CCNNGG 5 cut(s) 185, 340, 536, 661, 879
BssT1I CCWWGG 3 cut(s) 185, 340, 536
Bst4CI ACNGT 5 cut(s) 469, 961, 1214, 1348, 1584
Bst6I CTCTTC 2 cut(s) 1182, 1491
BstAFI CTTAAG 1 cut(s) 547
BstAUI TGTACA 1 cut(s) 1620
BstBAI YACGTR 1 cut(s) 1402
BstC8I GCNNGC 2 cut(s) 709, 1376
BstDEI CTNAG 4 cut(s) 102, 172, 629, 816
BstDSI CCRYGG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 5 cut(s) 112, 520, 652, 1231, 1289
BstMCI CGRYCG 2 cut(s) 57, 1463
BstMWI GCNNNNNNNGC 1 cut(s) 1638
BstNSI RCATGY 3 cut(s) 617, 800, 1309
BstSCI CCNGG 2 cut(s) 661, 878
BstSFI CTRYAG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 402
BstSNI TACGTA 1 cut(s) 1402
BstV1I GCAGC 1 cut(s) 1337
BstV2I GAAGAC 3 cut(s) 53, 362, 1302
BstX2I RGATCY 5 cut(s) 115, 335, 848, 967, 1451
BstYI RGATCY 5 cut(s) 115, 335, 848, 967, 1451
BstZI CGGCCG 1 cut(s) 1460
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 5 cut(s) 112, 520, 652, 1231, 1289
BtsI GCAGTG 1 cut(s) 1697
BtsIMutI CAGTG 3 cut(s) 1052, 1219, 1697
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 2 cut(s) 709, 1376
Cfr13I GGNCC 2 cut(s) 723, 1217
CseI GACGC 2 cut(s) 1030, 1638
Csp6I GTAC 6 cut(s) 313, 560, 1403, 1591, 1621, 1645
CspCI CAANNNNNGTGG 2 cut(s) 1041, 1076
CviQI GTAC 6 cut(s) 313, 560, 1403, 1591, 1621, 1645
DdeI CTNAG 4 cut(s) 102, 172, 629, 816
DraI TTTAAA 1 cut(s) 774
EaeI YGGCCR 1 cut(s) 1460
EagI CGGCCG 1 cut(s) 1460
Eam1104I CTCTTC 2 cut(s) 1182, 1491
EarI CTCTTC 2 cut(s) 1182, 1491
EciI GGCGGA 1 cut(s) 848
EclXI CGGCCG 1 cut(s) 1460
Eco105I TACGTA 1 cut(s) 1402
Eco130I CCWWGG 3 cut(s) 185, 340, 536
Eco147I AGGCCT 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 1217
Eco52I CGGCCG 1 cut(s) 1460
Eco57I CTGAAG 2 cut(s) 734, 1076
Eco81I CCTNAGG 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 453
EcoT14I CCWWGG 3 cut(s) 185, 340, 536
ErhI CCWWGG 3 cut(s) 185, 340, 536
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FaqI GGGAC 2 cut(s) 961, 1033
FblI GTMKAC 1 cut(s) 1302
Fnu4HI GCNGC 1 cut(s) 1326
FokI GGATG 5 cut(s) 119, 527, 659, 1238, 1276
Fsp4HI GCNGC 1 cut(s) 1326
FspBI CTAG 4 cut(s) 341, 422, 708, 906
GluI GCNGC 1 cut(s) 1326
HaeIII GGCC 5 cut(s) 250, 553, 724, 1149, 1462
HapII CCGG 2 cut(s) 663, 879
HgaI GACGC 2 cut(s) 1030, 1638
HincII GTYRAC 2 cut(s) 1167, 1597
HindII GTYRAC 2 cut(s) 1167, 1597
HindIII AAGCTT 3 cut(s) 953, 1253, 1376
HinfI GANTC 6 cut(s) 178, 358, 627, 974, 1267, 1519
HpaII CCGG 2 cut(s) 663, 879
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 8 cut(s) 400, 619, 1105, 1167, 1217, 1303, 1597, 1621
Hpy188I TCNGA 9 cut(s) 54, 175, 284, 330, 351, 632, 853, 1014, 1571
Hpy188III TCNNGA 6 cut(s) 119, 683, 765, 826, 971, 1419
Hpy8I GTNNAC 8 cut(s) 400, 619, 1105, 1167, 1217, 1303, 1597, 1621
HpyAV CCTTC 3 cut(s) 106, 823, 1504
HpyCH4III ACNGT 5 cut(s) 469, 961, 1214, 1348, 1584
HpyCH4IV ACGT 3 cut(s) 315, 1401, 1593
HpyCH4V TGCA 9 cut(s) 273, 308, 400, 530, 796, 1042, 1325, 1670, 1690
HpyF10VI GCNNNNNNNGC 1 cut(s) 1638
HpyF3I CTNAG 4 cut(s) 102, 172, 629, 816
HpySE526I ACGT 3 cut(s) 315, 1401, 1593
LmnI GCTCC 3 cut(s) 1278, 1355, 1695
Lsp1109I GCAGC 1 cut(s) 1337
LweI GCATC 1 cut(s) 1312
MaeI CTAG 4 cut(s) 341, 422, 708, 906
MaeII ACGT 3 cut(s) 315, 1401, 1593
MaeIII GTNAC 1 cut(s) 1342
MflI RGATCY 5 cut(s) 115, 335, 848, 967, 1451
MhlI GDGCHC 2 cut(s) 402, 1700
MlyI GAGTC 3 cut(s) 621, 983, 1276
MroXI GAANNNNTTC 1 cut(s) 1479
MseI TTAA 6 cut(s) 548, 773, 864, 912, 1263, 1656
MslI CAYNNNNRTG 3 cut(s) 571, 590, 914
MspA1I CMGCKG 2 cut(s) 508, 1328
MspCI CTTAAG 1 cut(s) 547
MspI CCGG 2 cut(s) 663, 879
MspR9I CCNGG 2 cut(s) 663, 880
Mva1269I GAATGC 1 cut(s) 1044
MwoI GCNNNNNNNGC 1 cut(s) 1638
NciI CCSGG 2 cut(s) 663, 880
NcoI CCATGG 1 cut(s) 185
NheI GCTAGC 1 cut(s) 707
NlaIV GGNNCC 3 cut(s) 117, 725, 1280
NspI RCATGY 3 cut(s) 617, 800, 1309
PceI AGGCCT 1 cut(s) 553
PciI ACATGT 2 cut(s) 613, 1305
PctI GAATGC 1 cut(s) 1044
PdmI GAANNNNTTC 1 cut(s) 1479
PfeI GAWTC 3 cut(s) 178, 358, 1519
PflMI CCANNNNNTGG 2 cut(s) 578, 1156
PkrI GCNGC 1 cut(s) 1327
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 3 cut(s) 621, 982, 1275
PpsI GAGTC 3 cut(s) 621, 982, 1275
Ppu21I YACGTR 1 cut(s) 1402
PscI ACATGT 2 cut(s) 613, 1305
PspN4I GGNNCC 3 cut(s) 117, 725, 1280
PspPI GGNCC 2 cut(s) 723, 1217
PsuI RGATCY 5 cut(s) 115, 335, 848, 967, 1451
PvuI CGATCG 1 cut(s) 57
PvuII CAGCTG 2 cut(s) 508, 1328
RsaI GTAC 6 cut(s) 314, 561, 1404, 1592, 1622, 1646
RsaNI GTAC 6 cut(s) 313, 560, 1403, 1591, 1621, 1645
RseI CAYNNNNRTG 3 cut(s) 571, 590, 914
SaqAI TTAA 6 cut(s) 548, 773, 864, 912, 1263, 1656
SatI GCNGC 1 cut(s) 1326
Sau96I GGNCC 2 cut(s) 723, 1217
SchI GAGTC 3 cut(s) 621, 983, 1276
ScrFI CCNGG 2 cut(s) 663, 880
SduI GDGCHC 2 cut(s) 402, 1700
SfaNI GCATC 1 cut(s) 1312
SfcI CTRYAG 1 cut(s) 783
SinI GGWCC 1 cut(s) 1217
SmiMI CAYNNNNRTG 3 cut(s) 571, 590, 914
SmlI CTYRAG 2 cut(s) 547, 1367
SmoI CTYRAG 2 cut(s) 547, 1367
SnaBI TACGTA 1 cut(s) 1402
SpeI ACTAGT 1 cut(s) 421
SseBI AGGCCT 1 cut(s) 553
SsiI CCGC 1 cut(s) 833
SspI AATATT 2 cut(s) 303, 483
SspMI CTAG 4 cut(s) 341, 422, 708, 906
StuI AGGCCT 1 cut(s) 553
StyD4I CCNGG 2 cut(s) 661, 878
StyI CCWWGG 3 cut(s) 185, 340, 536
TaaI ACNGT 5 cut(s) 469, 961, 1214, 1348, 1584
TaiI ACGT 3 cut(s) 318, 1404, 1596
TaqI TCGA 5 cut(s) 24, 493, 1002, 1661, 1683
TaqII GACCGA 1 cut(s) 47
TatI WGTACW 2 cut(s) 1620, 1644
TfiI GAWTC 3 cut(s) 178, 358, 1519
Tru1I TTAA 6 cut(s) 548, 773, 864, 912, 1263, 1656
Tru9I TTAA 6 cut(s) 548, 773, 864, 912, 1263, 1656
TscAI CASTG 3 cut(s) 1059, 1219, 1697
TseI GCWGC 1 cut(s) 1325
TspDTI ATGAA 8 cut(s) 7, 67, 73, 426, 432, 747, 973, 1488
TspGWI ACGGA 1 cut(s) 1288
TspRI CASTG 3 cut(s) 1059, 1219, 1697
Van91I CCANNNNNTGG 2 cut(s) 578, 1156
Vha464I CTTAAG 1 cut(s) 547
VneI GTGCAC 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 1217
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 5 cut(s) 453, 946, 1044, 1085, 1478
XceI RCATGY 3 cut(s) 617, 800, 1309
XmaJI CCTAGG 1 cut(s) 340
XmiI GTMKAC 1 cut(s) 1302
XmnI GAANNNNTTC 1 cut(s) 1479
XspI CTAG 4 cut(s) 341, 422, 708, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.