pycom01g13400

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001241
Physical Location & Seq
Forward (+)
13866183 .. 13867792
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13400.1

Sequence Viewer

Length: 729 bp
ATGAATAAGTTGAATCCTGAGTGGAATGAGAAGTTCAAGCTTCTTGTGAAGGACCCTCAAACTCAAGCTCTTGAGTTACAACTCTATGACTGGGACAAGGTTGGCAGACATGACAAATTGGGAATGCAGTTAGTTCCTTTAAAAGTACTAACACCCGGTGTGACAAAGGAATTTGTGCTAGATTTGGTCAAGAACACAAATATCATTTTAGATGATCCTCAAAACAAGAAGCATAGGGGGCAAATCGTGGTGGAGCTTGCTTTTGTTCCTTTCAAATCAGAAAGCAGTAAACTTAATGGAACTAGTAATGGTTTTGGGAAAAGCGAAAGTGGAAGGTCATCGGAGAGTGATGAGTCCCTTAGTGGAGCTGGTGTACTATCCGTTTTGATCCAGGGAGCTGAGGACGTAGAAGGGGAGCATCACAACAATCCTTATGCTTTGCTTTGCTTTAGAGGAGAAGAAAAGAAAACTAAGATTATTAAGAAATCTCGTAATCCACTTTGGAACGAAGATTTTCAATTTATGCTCGATGAGCCTCCTTTGAATGACAAGATTCTTATCGAGGTCAAGAGCAAAAGCAGAGCCCTAATCCGAGCCAAGGAATCACTGGGATACGTGGAAATTAATCTTGCCGATGTGGTACACAATGGCCGTATCAACCATAAGTACCATTTGATTGATTCCCAAAATGGAAGGATACATGTAGAGCTAAGTTGGACAAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001505 GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0005544 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0006906 GO:0006996 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008104 GO:0008150 GO:0008289 GO:0009987 GO:0010638 GO:0010646 GO:0010647 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016079 GO:0016192 GO:0017156 GO:0017157 GO:0017158 GO:0019905 GO:0023051 GO:0023052 GO:0023056 GO:0023061 GO:0030133 GO:0030276 GO:0031338 GO:0031340 GO:0031410 GO:0031982 GO:0032024 GO:0032879 GO:0032880 GO:0032940 GO:0033036 GO:0033043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045055 GO:0045921 GO:0045956 GO:0046872 GO:0046883 GO:0046887 GO:0046903 GO:0046907 GO:0048284 GO:0048489 GO:0048518 GO:0048522 GO:0048791 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070201 GO:0070382 GO:0071840 GO:0071944 GO:0090087 GO:0090174 GO:0090276 GO:0090277 GO:0097479 GO:0097480 GO:0097708 GO:0098916 GO:0099003 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:1903305 GO:1903307 GO:1903530 GO:1903532 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

243

Amino Acids

27.42

Weight (kDa)

7.11

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 2 - 55 9.2e-11 C2 domain
C2 PF00168 125 - 225 3.1e-15 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 209, 382
AcoI YGGCCR 1 cut(s) 649
AcsI RAATTY 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 158
AfaI GTAC 4 cut(s) 147, 375, 642, 668
AfiI CCNNNNNNNGG 1 cut(s) 598
AflIII ACRYGT 1 cut(s) 700
AgsI TTSAA 5 cut(s) 13, 37, 274, 518, 544
AhlI ACTAGT 1 cut(s) 302
AjnI CCWGG 1 cut(s) 390
AluBI AGCT 6 cut(s) 40, 68, 256, 368, 398, 709
AluI AGCT 6 cut(s) 40, 68, 256, 368, 398, 709
AlwI GGATC 2 cut(s) 209, 382
AoxI GGCC 1 cut(s) 649
ApoI RAATTY 1 cut(s) 170
AseI ATTAAT 1 cut(s) 624
Asp700I GAANNNNTTC 1 cut(s) 513
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 586
BbvCI CCTCAGC 1 cut(s) 399
BceAI ACGGC 1 cut(s) 636
BciT130I CCWGG 1 cut(s) 392
BciVI GTATCC 2 cut(s) 605, 690
BcnI CCSGG 1 cut(s) 156
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 2 cut(s) 179, 303
BfuI GTATCC 2 cut(s) 605, 690
BmcAI AGTACT 1 cut(s) 147
Bme1390I CCNGG 2 cut(s) 156, 392
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 2 cut(s) 156, 392
BmrI ACTGGG 2 cut(s) 100, 617
BmsI GCATC 1 cut(s) 427
BmuI ACTGGG 2 cut(s) 100, 617
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 2 cut(s) 48, 92
BpuMI CCSGG 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 616
BsaBI GATNNNNATC 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 391, 597
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse1I ACTGG 2 cut(s) 95, 612
Bse8I GATNNNNATC 1 cut(s) 557
BseBI CCWGG 1 cut(s) 392
BseDI CCNNGG 2 cut(s) 391, 597
BseJI GATNNNNATC 1 cut(s) 557
BseLI CCNNNNNNNGG 1 cut(s) 598
BseMII CTCAG 2 cut(s) 9, 390
BseNI ACTGG 2 cut(s) 95, 612
BseRI GAGGAG 1 cut(s) 468
BshFI GGCC 1 cut(s) 651
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 2 cut(s) 107, 340
BslI CCNNNNNNNGG 1 cut(s) 598
BsmFI GGGAC 2 cut(s) 107, 340
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 1 cut(s) 651
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 2 cut(s) 214, 387
BspANI GGCC 1 cut(s) 651
BspCNI CTCAG 2 cut(s) 10, 391
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 2 cut(s) 209, 382
BsrI ACTGG 2 cut(s) 95, 612
BssECI CCNNGG 2 cut(s) 391, 597
BssMI GATC 2 cut(s) 214, 387
BssT1I CCWWGG 1 cut(s) 597
Bst2UI CCWGG 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 616
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 5 cut(s) 18, 359, 399, 471, 710
BstKTI GATC 2 cut(s) 217, 390
BstMBI GATC 2 cut(s) 214, 387
BstMWI GCNNNNNNNGC 2 cut(s) 238, 532
BstNI CCWGG 1 cut(s) 392
BstNSI RCATGY 1 cut(s) 704
BstSCI CCNGG 2 cut(s) 154, 390
BsuI GTATCC 2 cut(s) 605, 690
BsuRI GGCC 1 cut(s) 651
BtsIMutI CAGTG 1 cut(s) 605
Cac8I GCNNGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 4 cut(s) 146, 374, 641, 667
CviAII CATG 2 cut(s) 110, 701
CviQI GTAC 4 cut(s) 146, 374, 641, 667
DdeI CTNAG 5 cut(s) 18, 359, 399, 471, 710
DpnI GATC 2 cut(s) 216, 389
DpnII GATC 2 cut(s) 214, 387
DraI TTTAAA 1 cut(s) 141
DraIII CACNNNGTG 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 649
Eco130I CCWWGG 1 cut(s) 597
Eco24I GRGCYC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 597
EcoT38I GRGCYC 1 cut(s) 586
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 2 cut(s) 113, 704
FaiI YATR 7 cut(s) 87, 111, 234, 435, 524, 663, 702
FaqI GGGAC 2 cut(s) 107, 340
FatI CATG 2 cut(s) 109, 700
FriOI GRGCYC 1 cut(s) 586
FspBI CTAG 2 cut(s) 179, 303
HaeIII GGCC 1 cut(s) 651
HapII CCGG 1 cut(s) 156
Hin1II CATG 2 cut(s) 113, 704
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 5 cut(s) 13, 353, 553, 602, 680
HpaII CCGG 1 cut(s) 156
Hpy166II GTNNAC 3 cut(s) 290, 374, 643
Hpy188I TCNGA 3 cut(s) 280, 343, 593
Hpy188III TCNNGA 4 cut(s) 17, 71, 190, 568
Hpy8I GTNNAC 3 cut(s) 290, 374, 643
HpyAV CCTTC 4 cut(s) 43, 327, 404, 687
HpyCH4IV ACGT 2 cut(s) 405, 615
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 532
HpyF3I CTNAG 5 cut(s) 18, 359, 399, 471, 710
HpySE526I ACGT 2 cut(s) 405, 615
Hsp92II CATG 2 cut(s) 113, 704
Kzo9I GATC 2 cut(s) 214, 387
LmnI GCTCC 4 cut(s) 253, 365, 395, 415
LpnPI CCDG 7 cut(s) 30, 76, 169, 354, 377, 404, 593
LweI GCATC 1 cut(s) 427
MaeI CTAG 2 cut(s) 179, 303
MaeII ACGT 2 cut(s) 405, 615
MaeIII GTNAC 2 cut(s) 75, 160
MalI GATC 2 cut(s) 216, 389
MboI GATC 2 cut(s) 214, 387
MboII GAAGA 2 cut(s) 470, 521
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 4 cut(s) 116, 170, 518, 621
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 695
MnlI CCTC 6 cut(s) 66, 228, 394, 446, 546, 556
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 4 cut(s) 140, 294, 480, 624
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 156, 392
Mva1269I GAATGC 1 cut(s) 129
MvaI CCWGG 1 cut(s) 392
MwoI GCNNNNNNNGC 2 cut(s) 238, 532
NciI CCSGG 1 cut(s) 156
NdeII GATC 2 cut(s) 214, 387
NlaIII CATG 2 cut(s) 113, 704
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 704
PciI ACATGT 1 cut(s) 700
PctI GAATGC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 4 cut(s) 13, 553, 602, 680
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 616
PpuMI RGGWCCY 1 cut(s) 52
PscI ACATGT 1 cut(s) 700
PshBI ATTAAT 1 cut(s) 624
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 390
PspGI CCWGG 1 cut(s) 390
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
RsaI GTAC 4 cut(s) 147, 375, 642, 668
RsaNI GTAC 4 cut(s) 146, 374, 641, 667
SaqAI TTAA 4 cut(s) 140, 294, 480, 624
Sau3AI GATC 2 cut(s) 214, 387
Sau96I GGNCC 1 cut(s) 52
ScaI AGTACT 1 cut(s) 147
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 2 cut(s) 156, 392
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 1 cut(s) 427
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 2 cut(s) 63, 71
SmoI CTYRAG 2 cut(s) 63, 71
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 4 cut(s) 116, 170, 518, 621
SspMI CTAG 2 cut(s) 179, 303
StyD4I CCNGG 2 cut(s) 154, 390
StyI CCWWGG 1 cut(s) 597
TaiI ACGT 2 cut(s) 408, 618
TaqI TCGA 2 cut(s) 528, 561
TasI AATT 4 cut(s) 116, 170, 518, 621
TatI WGTACW 2 cut(s) 145, 373
TfiI GAWTC 4 cut(s) 13, 553, 602, 680
Tru1I TTAA 4 cut(s) 140, 294, 480, 624
Tru9I TTAA 4 cut(s) 140, 294, 480, 624
TscAI CASTG 1 cut(s) 612
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 1 cut(s) 612
VpaK11BI GGWCC 1 cut(s) 52
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 1 cut(s) 170
XceI RCATGY 1 cut(s) 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 2 cut(s) 179, 303
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.