Prupe.6G235800_v2.0.a1

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001241
Physical Location & Seq
Forward (+)
23667982 .. 23672151
4170 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G235800.1

Sequence Viewer

Length: 1662 bp
ATGAGAATTTTAAGTTTTTTATTCGAAATCATTGGATTTGGAATTGGGATTCCGATCGGTCTTCTACTGGGATTTTTCATATTCATATACTCAGAGCCAGATGATGTGAAGGATCCAATAATTAAACCACTTAATGAGATTGATACAGGCTCTCTGATTGATCTCTTGCATGAGATTCCTCCATGGGTGAAACATCCTGATTATGAAAGAATTGACTGGTTCAACAAGGCTTTATATGATATGTGGCCTTACCTTGATAAGGCAATCTGCGGTATCATACGAAGCACGGCGAAGCCTATATTTGCAGAGTACATTGGGCAGTATCAGATAAAATCAATCGAATTCGAAACCCTGACTCTTGGAAGCCTTCCTCCTACAGTTTATGGTATGAGAGTGCATGAAAGCAATGAAAATGAACTGGTGTTTGAGCCTGCAATTAGATGGGCCGGAAATCCCCACATAACTGTGGTGTTGAAACTTTTGTCTTTTCGAATTTCAGCGCAGCTGGTAGATGTCCAAATATTTGCTGCACCAAGGATCATTTTAAGGCCTCTTGTGCCATCATTCCCATGCTTTGCAAACATAACAGCGACTTTGATAGATAAGCCACATGTGGATTTTGGACTCAAAATACAGGGAGGGGATGTCATGGCAATCCCTGGTCTGTATCAGTTTGTTCAGGAATTTATAAGAAGACAAGTTGCTAGCCTTTATTTATGGCCCCAAACTTTGGAAATACCAATTCTTGATGGTTCCCTATCAGGGGCTATAAAGAAGCCTGTAGGCATTTTACATGTGAAGGTTGTAAGAGCACTCAAACTCTTGAAGATGGACATTATAGGAACATCTGATCCTTATGTTAAGATCAAGCTAAGTGGGGAGAGGCTTCCATCAAAGAAAACTACCATTAAGATGAGGAACCTCAACCCTGAATGGAATGAGAATTTCAAGCTTACAGTCAAAGATCCCCAGTCCCAAGTTCTTCAGTTTCATCTTTACGACTGGGAACAGATTGGGACACATGACTTTTTGGGGATGCAAATTGTTCCACTGAAGGTGCTTGCCCCCCTTGAGAAAAAAGAATTAACCCTTGATTTGGTGAAGAACACAAACCCTTATGATCCTCAAAACAAGAAAGGGAGAGGCCAACTGGTGGTGGAATTGACATACAATCCTTTTATAGATGATAATGCAAAATACAGTGGACCTCTGGATGCAAGTGTGGCAGGAGAAAACATTGGAAGGAGCCGAAAGGCATCCATAGACTTTTCCTGCCTTTCATCGCTAGAAGCAGCTGGTTTGCTTTCGGTTACAGTCCAAGGAGCTGAAGGTGTTGGAGGCAAGAACCACACCAACCCTAACCCTTATTGTTTGGTCAGCTTTGGATCAGAAACGAAGATAACCAAGATGCTGAGGAAAACCCAGCGTCCAAGTTGGAATGAAGAATTTCAGTTTGTGCTAGAAGAGGCTTCTTTAAAGGATAAGATCCATATTGAAGTAAAGAGTAAGAGAAGATTTGGTTTCCGTCGATATGAATCGTTGGGGTATATTGAGATCAGTTTTAGTGACGTGGTACACAATGGACGCATTAGAGGGAAGTACAATTTGATAAACTCGAAAAATGGAGTTTTACATATTGAGATCCAGTGGAACTCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

554

Amino Acids

62.63

Weight (kDa)

8.55

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 689
AccB7I CCANNNNNTGG 2 cut(s) 730, 1153
AciI CCGC 1 cut(s) 270
AclWI GGATC 9 cut(s) 107, 120, 545, 845, 959, 1115, 1393, 1480, 1636
AcsI RAATTY 6 cut(s) 6, 341, 492, 683, 943, 1445
AcuI CTGAAG 3 cut(s) 968, 1073, 1347
AfaI GTAC 3 cut(s) 311, 1575, 1601
AfiI CCNNNNNNNGG 6 cut(s) 259, 730, 762, 763, 1096, 1153
AflIII ACRYGT 2 cut(s) 610, 793
AgsI TTSAA 5 cut(s) 223, 475, 826, 949, 1496
AjiI CACGTC 1 cut(s) 1570
AjnI CCWGG 1 cut(s) 658
AloI GAACNNNNNNTCC 2 cut(s) 835, 867
AluBI AGCT 6 cut(s) 505, 871, 952, 1295, 1325, 1380
AluI AGCT 6 cut(s) 505, 871, 952, 1295, 1325, 1380
Alw21I GWGCWC 1 cut(s) 814
AlwI GGATC 9 cut(s) 107, 120, 545, 845, 959, 1115, 1393, 1480, 1636
AoxI GGCC 5 cut(s) 245, 444, 548, 719, 1144
ApeKI GCWGC 3 cut(s) 502, 527, 1292
ApoI RAATTY 6 cut(s) 6, 341, 492, 683, 943, 1445
Asp700I GAANNNNTTC 1 cut(s) 1446
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 3 cut(s) 444, 720, 1205
AsuHPI GGTGA 2 cut(s) 199, 1111
AsuII TTCGAA 3 cut(s) 24, 345, 490
AsuNHI GCTAGC 1 cut(s) 704
AvaII GGWCC 1 cut(s) 1205
BamHI GGATCC 1 cut(s) 112
BbsI GAAGAC 2 cut(s) 53, 700
Bbv12I GWGCWC 1 cut(s) 814
BbvCI CCTCAGC 1 cut(s) 1412
BbvI GCAGC 3 cut(s) 514, 514, 1304
BccI CCATC 5 cut(s) 435, 568, 743, 823, 898
BceAI ACGGC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 660
BfaI CTAG 3 cut(s) 705, 1286, 1460
BfmI CTRYAG 2 cut(s) 375, 780
BisI GCNGC 3 cut(s) 503, 528, 1293
BlsI GCNGC 3 cut(s) 504, 529, 1294
Bme1390I CCNGG 1 cut(s) 660
Bme18I GGWCC 1 cut(s) 1205
BmgBI CACGTC 1 cut(s) 1570
BmgT120I GGNCC 3 cut(s) 444, 720, 1205
BmiI GGNNCC 5 cut(s) 114, 722, 754, 920, 1247
BmrFI CCNGG 1 cut(s) 660
BmrI ACTGGG 3 cut(s) 77, 964, 1012
BmsI GCATC 4 cut(s) 1026, 1204, 1265, 1398
BmtI GCTAGC 1 cut(s) 708
BmuI ACTGGG 3 cut(s) 77, 964, 1012
BpiI GAAGAC 2 cut(s) 53, 700
Bpu10I CCTNAGC 1 cut(s) 1412
Bpu14I TTCGAA 3 cut(s) 24, 345, 490
BpuEI CTTGAG 1 cut(s) 1091
BsaBI GATNNNNATC 2 cut(s) 53, 1534
BsaJI CCNNGG 4 cut(s) 182, 533, 658, 1318
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 6 cut(s) 259, 730, 762, 763, 1096, 1153
Bse1I ACTGG 7 cut(s) 72, 221, 423, 970, 1007, 1155, 1645
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 2 cut(s) 53, 1534
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 4 cut(s) 182, 533, 658, 1318
BseGI GGATG 5 cut(s) 193, 649, 1041, 1219, 1256
BseJI GATNNNNATC 2 cut(s) 53, 1534
BseLI CCNNNNNNNGG 6 cut(s) 259, 730, 762, 763, 1096, 1153
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 105, 1403
BseNI ACTGG 7 cut(s) 72, 221, 423, 970, 1007, 1155, 1645
BseXI GCAGC 3 cut(s) 514, 514, 1304
BseYI CCCAGC 1 cut(s) 1422
BsgI GTGCAG 1 cut(s) 513
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 5 cut(s) 247, 446, 550, 721, 1146
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 814
BsiSI CCGG 1 cut(s) 447
BslFI GGGAC 2 cut(s) 958, 1030
BslI CCNNNNNNNGG 6 cut(s) 259, 730, 762, 763, 1096, 1153
BsmFI GGGAC 2 cut(s) 958, 1030
BsnI GGCC 5 cut(s) 247, 446, 550, 721, 1146
Bsp119I TTCGAA 3 cut(s) 24, 345, 490
Bsp1286I GDGCHC 1 cut(s) 814
Bsp19I CCATGG 1 cut(s) 182
BspACI CCGC 1 cut(s) 270
BspANI GGCC 5 cut(s) 247, 446, 550, 721, 1146
BspCNI CTCAG 2 cut(s) 104, 1404
BspLI GGNNCC 5 cut(s) 114, 722, 754, 920, 1247
BspOI GCTAGC 1 cut(s) 708
BspPI GGATC 9 cut(s) 107, 120, 545, 845, 959, 1115, 1393, 1480, 1636
BspT104I TTCGAA 3 cut(s) 24, 345, 490
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 7 cut(s) 72, 221, 423, 970, 1007, 1155, 1645
BssECI CCNNGG 4 cut(s) 182, 533, 658, 1318
BssT1I CCWWGG 3 cut(s) 182, 533, 1318
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 5 cut(s) 379, 466, 958, 1202, 1315
Bst6I CTCTTC 1 cut(s) 1458
BstBI TTCGAA 3 cut(s) 24, 345, 490
BstC8I GCNNGC 3 cut(s) 432, 706, 1062
BstDEI CTNAG 3 cut(s) 91, 872, 1412
BstDSI CCRYGG 1 cut(s) 182
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 5 cut(s) 193, 649, 1041, 1219, 1256
BstHHI GCGC 1 cut(s) 502
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 556, 1223
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 2 cut(s) 614, 797
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 2 cut(s) 375, 780
BstV1I GCAGC 3 cut(s) 514, 514, 1304
BstV2I GAAGAC 2 cut(s) 53, 700
BstX2I RGATCY 4 cut(s) 112, 964, 1485, 1641
BstYI RGATCY 4 cut(s) 112, 964, 1485, 1641
BsuRI GGCC 5 cut(s) 247, 446, 550, 721, 1146
BtgI CCRYGG 1 cut(s) 182
BtgZI GCGATG 1 cut(s) 1266
BtrI CACGTC 1 cut(s) 1570
BtsCI GGATG 5 cut(s) 193, 649, 1041, 1219, 1256
BtsIMutI CAGTG 3 cut(s) 1049, 1207, 1652
Cac8I GCNNGC 3 cut(s) 432, 706, 1062
CfoI GCGC 1 cut(s) 502
Cfr13I GGNCC 3 cut(s) 444, 720, 1205
CseI GACGC 2 cut(s) 1415, 1593
Csp6I GTAC 3 cut(s) 310, 1574, 1600
CspCI CAANNNNNGTGG 2 cut(s) 856, 891
CviAII CATG 9 cut(s) 170, 183, 398, 570, 611, 649, 794, 1022, 1659
CviQI GTAC 3 cut(s) 310, 1574, 1600
DdeI CTNAG 3 cut(s) 91, 872, 1412
DraI TTTAAA 1 cut(s) 1476
Eam1104I CTCTTC 1 cut(s) 1458
EarI CTCTTC 1 cut(s) 1458
Eco130I CCWWGG 3 cut(s) 182, 533, 1318
Eco147I AGGCCT 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 1205
Eco57I CTGAAG 3 cut(s) 968, 1073, 1347
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 658
EcoT14I CCWWGG 3 cut(s) 182, 533, 1318
ErhI CCWWGG 3 cut(s) 182, 533, 1318
FaeI CATG 9 cut(s) 173, 186, 401, 573, 614, 652, 797, 1025, 1662
FaqI GGGAC 2 cut(s) 958, 1030
FatI CATG 9 cut(s) 169, 182, 397, 569, 610, 648, 793, 1021, 1658
Fnu4HI GCNGC 3 cut(s) 503, 528, 1293
FokI GGATG 5 cut(s) 180, 656, 1048, 1226, 1243
Fsp4HI GCNGC 3 cut(s) 503, 528, 1293
FspBI CTAG 3 cut(s) 705, 1286, 1460
GlaI GCGC 1 cut(s) 501
GluI GCNGC 3 cut(s) 503, 528, 1293
GsaI CCCAGC 1 cut(s) 1426
HaeIII GGCC 5 cut(s) 247, 446, 550, 721, 1146
HapII CCGG 1 cut(s) 447
HgaI GACGC 2 cut(s) 1415, 1593
HhaI GCGC 1 cut(s) 502
Hin1II CATG 9 cut(s) 173, 186, 401, 573, 614, 652, 797, 1025, 1662
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HindIII AAGCTT 1 cut(s) 950
HinfI GANTC 5 cut(s) 49, 175, 355, 624, 1535
HpaII CCGG 1 cut(s) 447
HphI GGTGA 2 cut(s) 199, 1111
Hpy166II GTNNAC 2 cut(s) 1205, 1576
Hpy188I TCNGA 6 cut(s) 54, 94, 156, 327, 850, 1390
Hpy188III TCNNGA 5 cut(s) 197, 680, 746, 823, 1211
Hpy8I GTNNAC 2 cut(s) 1205, 1576
Hpy99I CGWCG 1 cut(s) 1530
HpyAV CCTTC 6 cut(s) 103, 377, 793, 1048, 1236, 1322
HpyCH4III ACNGT 5 cut(s) 379, 466, 958, 1202, 1315
HpyCH4IV ACGT 1 cut(s) 1569
HpyCH4V TGCA 9 cut(s) 169, 305, 397, 434, 530, 578, 1039, 1193, 1217
HpyF10VI GCNNNNNNNGC 2 cut(s) 556, 1223
HpyF3I CTNAG 3 cut(s) 91, 872, 1412
HpySE526I ACGT 1 cut(s) 1569
Hsp92II CATG 9 cut(s) 173, 186, 401, 573, 614, 652, 797, 1025, 1662
HspAI GCGC 1 cut(s) 500
LmnI GCTCC 2 cut(s) 1245, 1322
Lsp1109I GCAGC 3 cut(s) 514, 514, 1304
LweI GCATC 4 cut(s) 1026, 1204, 1265, 1398
MaeI CTAG 3 cut(s) 705, 1286, 1460
MaeII ACGT 1 cut(s) 1569
MaeIII GTNAC 2 cut(s) 1309, 1565
MboII GAAGA 9 cut(s) 53, 705, 838, 974, 1114, 1408, 1454, 1475, 1524
MflI RGATCY 4 cut(s) 112, 964, 1485, 1641
MhlI GDGCHC 1 cut(s) 814
MlyI GAGTC 2 cut(s) 349, 618
MmeI TCCRAC 2 cut(s) 1315, 1415
MroXI GAANNNNTTC 1 cut(s) 1446
MseI TTAA 8 cut(s) 11, 123, 132, 545, 861, 909, 1085, 1475
MslI CAYNNNNRTG 3 cut(s) 464, 568, 911
MspA1I CMGCKG 2 cut(s) 505, 1295
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 2 cut(s) 556, 1223
NcoI CCATGG 1 cut(s) 182
NheI GCTAGC 1 cut(s) 704
NlaIII CATG 9 cut(s) 173, 186, 401, 573, 614, 652, 797, 1025, 1662
NlaIV GGNNCC 5 cut(s) 114, 722, 754, 920, 1247
NmuCI GTSAC 1 cut(s) 1565
NspI RCATGY 2 cut(s) 614, 797
NspV TTCGAA 3 cut(s) 24, 345, 490
PceI AGGCCT 1 cut(s) 550
PciI ACATGT 2 cut(s) 610, 793
PdmI GAANNNNTTC 1 cut(s) 1446
PfeI GAWTC 3 cut(s) 49, 175, 1535
PflMI CCANNNNNTGG 2 cut(s) 730, 1153
PkrI GCNGC 3 cut(s) 504, 529, 1294
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 2 cut(s) 349, 618
PpsI GAGTC 2 cut(s) 349, 618
PscI ACATGT 2 cut(s) 610, 793
PsiI TTATAA 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 658
PspFI CCCAGC 1 cut(s) 1422
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 5 cut(s) 114, 722, 754, 920, 1247
PspPI GGNCC 3 cut(s) 444, 720, 1205
PsuI RGATCY 4 cut(s) 112, 964, 1485, 1641
PvuI CGATCG 1 cut(s) 57
PvuII CAGCTG 2 cut(s) 505, 1295
RsaI GTAC 3 cut(s) 311, 1575, 1601
RsaNI GTAC 3 cut(s) 310, 1574, 1600
RseI CAYNNNNRTG 3 cut(s) 464, 568, 911
SaqAI TTAA 8 cut(s) 11, 123, 132, 545, 861, 909, 1085, 1475
SatI GCNGC 3 cut(s) 503, 528, 1293
Sau96I GGNCC 3 cut(s) 444, 720, 1205
SchI GAGTC 2 cut(s) 349, 618
ScrFI CCNGG 1 cut(s) 660
SduI GDGCHC 1 cut(s) 814
SfaNI GCATC 4 cut(s) 1026, 1204, 1265, 1398
SfcI CTRYAG 2 cut(s) 375, 780
SfuI TTCGAA 3 cut(s) 24, 345, 490
SinI GGWCC 1 cut(s) 1205
SmiMI CAYNNNNRTG 3 cut(s) 464, 568, 911
SmlI CTYRAG 1 cut(s) 1070
SmoI CTYRAG 1 cut(s) 1070
SseBI AGGCCT 1 cut(s) 550
SsiI CCGC 1 cut(s) 270
SspI AATATT 1 cut(s) 522
SspMI CTAG 3 cut(s) 705, 1286, 1460
StuI AGGCCT 1 cut(s) 550
StyD4I CCNGG 1 cut(s) 658
StyI CCWWGG 3 cut(s) 182, 533, 1318
TaaI ACNGT 5 cut(s) 379, 466, 958, 1202, 1315
TaiI ACGT 1 cut(s) 1572
TaqI TCGA 6 cut(s) 24, 339, 345, 490, 1528, 1616
TaqII GACCGA 1 cut(s) 47
TatI WGTACW 2 cut(s) 309, 1599
TfiI GAWTC 3 cut(s) 49, 175, 1535
Tru1I TTAA 8 cut(s) 11, 123, 132, 545, 861, 909, 1085, 1475
Tru9I TTAA 8 cut(s) 11, 123, 132, 545, 861, 909, 1085, 1475
TscAI CASTG 3 cut(s) 1056, 1207, 1652
TseFI GTSAC 1 cut(s) 1565
TseI GCWGC 3 cut(s) 502, 527, 1292
Tsp45I GTSAC 1 cut(s) 1565
TspGWI ACGGA 1 cut(s) 1514
TspRI CASTG 3 cut(s) 1056, 1207, 1652
Van91I CCANNNNNTGG 2 cut(s) 730, 1153
VpaK11BI GGWCC 1 cut(s) 1205
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 6 cut(s) 6, 341, 492, 683, 943, 1445
XceI RCATGY 2 cut(s) 614, 797
XmnI GAANNNNTTC 1 cut(s) 1446
XspI CTAG 3 cut(s) 705, 1286, 1460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.