Rorug01G0303700

Synaptotagmin-3-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
41937797 .. 41940102
2306 bp
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UTR
Exon/CDS
Intron
Rorug01G0303700.1

Sequence Viewer

Length: 543 bp
ATGAAAATCTGGGAGATAAAAGAAAGGGATATTCAAGAAGCGAAAATCTGGGTTGCTCTGCTCAATCAAATTGTCAAGTGTTATGGAAGGGAATCAGCAAAAACAGGAGGGAGATGCCATGACAACAATTATAGGACCATAATATTGATAAGGTATCTATGTTGTGGAAGATATATGCCATGTAGTGGAAAGTTTGGAGAGAAAGATTGTCCTGCATGTTGTCTTTGCTGTGAGGGATTAGTTGTGTTGATTCGGGTTTTCTGTTGCTTTGCAACTTCAGTTTCATCAACTGGCTATCTATACAAGATGAGTTCAATATACACTCAGGTGCCTCTTATTCTTGTCAAGAAGATCTACACTCAGACTTTCTTATATATTAATGTGCAACTCTTTAATAGTCTCCTTCTGCGTTGTGAATGTTGTACATCTAGCAATGGGGAGTATGTGAAATCTGGGGAGTATGTGTTGAGGTTGTGTCCTTGTGAAATTTGGGGAGTTATTCCGCAATGGTTTAGTTATAATGGATTTGATATTGTAATTTAA

Protein Analysis

180

Amino Acids

20.69

Weight (kDa)

8.53

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIL PF01843 118 - 151 2e-06 DIL domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 328
AccB7I CCANNNNNTGG 1 cut(s) 185
AciI CCGC 1 cut(s) 503
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 2 cut(s) 35, 315
AleI CACNNNNGTG 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 486
AseI ATTAAT 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 135
AvaII GGWCC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 1 cut(s) 429
BglII AGATCT 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 330
BmsI GCATC 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 2 cut(s) 439, 512
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 2 cut(s) 439, 512
BseMII CTCAG 2 cut(s) 338, 374
BseNI ACTGG 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 404
Bsp1407I TGTACA 1 cut(s) 422
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 1 cut(s) 503
BspCNI CTCAG 2 cut(s) 337, 373
BspLI GGNNCC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 328
BsrDI GCAATG 2 cut(s) 439, 512
BsrGI TGTACA 1 cut(s) 422
BsrI ACTGG 1 cut(s) 295
BssMI GATC 1 cut(s) 351
BstAUI TGTACA 1 cut(s) 422
BstDEI CTNAG 2 cut(s) 324, 360
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 423
CviAII CATG 3 cut(s) 119, 180, 216
CviJI RGCY 1 cut(s) 294
CviKI_1 RGCY 1 cut(s) 294
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 2 cut(s) 324, 360
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 261
FaeI CATG 3 cut(s) 122, 183, 219
FatI CATG 3 cut(s) 118, 179, 215
FspBI CTAG 1 cut(s) 429
Hin1II CATG 3 cut(s) 122, 183, 219
HinfI GANTC 2 cut(s) 92, 250
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 2 cut(s) 35, 346
HpyAV CCTTC 2 cut(s) 81, 413
HpyCH4V TGCA 3 cut(s) 215, 272, 385
HpyF3I CTNAG 2 cut(s) 324, 360
Hsp92II CATG 3 cut(s) 122, 183, 219
Kzo9I GATC 1 cut(s) 351
LpnPI CCDG 6 cut(s) 34, 90, 225, 276, 311, 438
LweI GCATC 1 cut(s) 104
MaeI CTAG 1 cut(s) 429
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 2 cut(s) 180, 361
MflI RGATCY 1 cut(s) 351
MluCI AATT 4 cut(s) 69, 127, 486, 537
MnlI CCTC 4 cut(s) 101, 226, 342, 462
MseI TTAA 3 cut(s) 378, 393, 541
MslI CAYNNNNRTG 1 cut(s) 326
NdeII GATC 1 cut(s) 351
NlaIII CATG 3 cut(s) 122, 183, 219
NlaIV GGNNCC 1 cut(s) 330
NspI RCATGY 1 cut(s) 219
OliI CACNNNNGTG 1 cut(s) 326
PfeI GAWTC 2 cut(s) 92, 250
PflMI CCANNNNNTGG 1 cut(s) 185
PshBI ATTAAT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 3 cut(s) 378, 393, 541
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 1 cut(s) 135
SetI ASST 3 cut(s) 155, 330, 473
SfaNI GCATC 1 cut(s) 104
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 4 cut(s) 69, 127, 486, 537
SsiI CCGC 1 cut(s) 503
SspI AATATT 1 cut(s) 144
SspMI CTAG 1 cut(s) 429
TasI AATT 4 cut(s) 69, 127, 486, 537
TatI WGTACW 1 cut(s) 422
TfiI GAWTC 2 cut(s) 92, 250
Tru1I TTAA 3 cut(s) 378, 393, 541
Tru9I TTAA 3 cut(s) 378, 393, 541
TspDTI ATGAA 2 cut(s) 17, 273
Van91I CCANNNNNTGG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 135
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 1 cut(s) 486
XceI RCATGY 1 cut(s) 219
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.