Rmu_sc0036506.1_g000001

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036506.1
OG0001241
Physical Location & Seq
Reverse (-)
3077 .. 5056
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036506.1_g000001.1.cds

Sequence Viewer

Length: 816 bp
atggacttccttggaacttcggatccttacgtcaaactaagcctcaccgaagataggttgccagcaaagaaaaccactattaagatgaaatctttgaatcctgagtggaatgagaagttcaagcttattgtgaaagacccccatactcaaggacttgagttacaagtctatgattgggacaaggttggcagacatgacagattgggaatgcagctaattcccttgcaagtgctaacacctggagagacaaaggaatttatgctggatttggtcaagaatacaaatcttaacgatcctcaaaacaagaagcgtagaggacaacttgtggtggagcttacttatgttcctttaaaatcagatagccttacattgaatggacctgatggtggatatgggagaactgaaagtggaattagcaagtcatcagatagtggcaaaaccctggatgaagcgggtttcctatcagtgatgatcgtgggagctgaggaagtagaaggggagcatcacaacaatccttatgctgtgctttgctttaaaggagatgaaaagaaaacaagggtgataaaaaaatctcgaaacccaagttggaatgaagattaccaatttatgcttgatgaacctccactaaatgagaagatccgtattgaggtcctgagcaaaagcagagcccttagtttcagagcaaaggaatcattgggatatgtggaaattaatctcactgatgtggtatgcaatggacggatcaaccacaagtaccatttaattaactccaaaaatggaaagttgcatgtagagcttagttggactaaggcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001505 GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0005544 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0006906 GO:0006996 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008104 GO:0008150 GO:0008289 GO:0009987 GO:0010638 GO:0010646 GO:0010647 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016079 GO:0016192 GO:0017156 GO:0017157 GO:0017158 GO:0019905 GO:0023051 GO:0023052 GO:0023056 GO:0023061 GO:0030133 GO:0030276 GO:0031338 GO:0031340 GO:0031410 GO:0031982 GO:0032024 GO:0032879 GO:0032880 GO:0032940 GO:0033036 GO:0033043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045055 GO:0045921 GO:0045956 GO:0046872 GO:0046883 GO:0046887 GO:0046903 GO:0046907 GO:0048284 GO:0048489 GO:0048518 GO:0048522 GO:0048791 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070201 GO:0070382 GO:0071840 GO:0071944 GO:0090087 GO:0090174 GO:0090276 GO:0090277 GO:0097479 GO:0097480 GO:0097708 GO:0098916 GO:0099003 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:1903305 GO:1903307 GO:1903530 GO:1903532 GO:1904951
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

271

Amino Acids

30.78

Weight (kDa)

8.32

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 452
AclWI GGATC 5 cut(s) 17, 30, 287, 631, 749
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 1 cut(s) 755
AfiI CCNNNNNNNGG 3 cut(s) 54, 386, 646
AgsI TTSAA 3 cut(s) 97, 121, 373
AjnI CCWGG 2 cut(s) 238, 441
AjuI GAANNNNNNNTTGG 2 cut(s) 568, 600
AleI CACNNNNGTG 1 cut(s) 722
AloI GAACNNNNNNTCC 2 cut(s) 7, 39
AluBI AGCT 5 cut(s) 124, 214, 334, 482, 796
AluI AGCT 5 cut(s) 124, 214, 334, 482, 796
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 5 cut(s) 17, 30, 287, 631, 749
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 1 cut(s) 254
AseI ATTAAT 1 cut(s) 711
AspS9I GGNCC 2 cut(s) 377, 649
AsuHPI GGTGA 2 cut(s) 37, 571
AvaII GGWCC 2 cut(s) 377, 649
BamHI GGATCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 670
BbvCI CCTCAGC 1 cut(s) 483
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 377
BciT130I CCWGG 2 cut(s) 240, 443
BcoDI GTCTC 1 cut(s) 239
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 2 cut(s) 240, 443
Bme18I GGWCC 2 cut(s) 377, 649
BmgT120I GGNCC 2 cut(s) 377, 649
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 240, 443
BmsI GCATC 1 cut(s) 511
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 2 cut(s) 483, 653
BpuEI CTTGAG 2 cut(s) 132, 176
BsaJI CCNNGG 2 cut(s) 10, 441
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 386, 646
Bse3DI GCAATG 1 cut(s) 739
BseBI CCWGG 2 cut(s) 240, 443
BseDI CCNNGG 2 cut(s) 10, 441
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 3 cut(s) 54, 386, 646
BseMI GCAATG 1 cut(s) 739
BseMII CTCAG 3 cut(s) 93, 474, 644
BseXI GCAGC 1 cut(s) 223
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 3 cut(s) 54, 386, 646
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 670
Bsp143I GATC 5 cut(s) 22, 292, 471, 636, 741
BspACI CCGC 1 cut(s) 452
BspCNI CTCAG 3 cut(s) 94, 475, 645
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 5 cut(s) 17, 30, 287, 631, 749
BsrDI GCAATG 1 cut(s) 739
BssECI CCNNGG 2 cut(s) 10, 441
BssMI GATC 5 cut(s) 22, 292, 471, 636, 741
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 2 cut(s) 240, 443
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 7 cut(s) 38, 102, 483, 653, 671, 797, 807
BstF5I GGATG 1 cut(s) 451
BstKTI GATC 5 cut(s) 25, 295, 474, 639, 744
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 5 cut(s) 22, 292, 471, 636, 741
BstMWI GCNNNNNNNGC 1 cut(s) 793
BstNI CCWGG 2 cut(s) 240, 443
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 238, 441
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 2 cut(s) 22, 636
BstYI RGATCY 2 cut(s) 22, 636
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 2 cut(s) 471, 717
Cac8I GCNNGC 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 377, 649
Csp6I GTAC 1 cut(s) 754
CviAII CATG 2 cut(s) 194, 788
CviJI RGCY 9 cut(s) 42, 124, 214, 334, 363, 482, 668, 796, 812
CviKI_1 RGCY 9 cut(s) 42, 124, 214, 334, 363, 482, 668, 796, 812
CviQI GTAC 1 cut(s) 754
DdeI CTNAG 7 cut(s) 38, 102, 483, 653, 671, 797, 807
DpnI GATC 5 cut(s) 24, 294, 473, 638, 743
DpnII GATC 5 cut(s) 22, 292, 471, 636, 741
DraI TTTAAA 2 cut(s) 351, 535
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 670
Eco47I GGWCC 2 cut(s) 377, 649
EcoO109I RGGNCCY 1 cut(s) 649
EcoRII CCWGG 2 cut(s) 238, 441
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 2 cut(s) 197, 791
FaqI GGGAC 1 cut(s) 191
FatI CATG 2 cut(s) 193, 787
FauI CCCGC 1 cut(s) 445
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 261
Hin1II CATG 2 cut(s) 197, 791
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 97, 689
HphI GGTGA 2 cut(s) 37, 571
Hpy188I TCNGA 4 cut(s) 22, 358, 427, 680
Hpy188III TCNNGA 4 cut(s) 101, 274, 573, 652
HpyAV CCTTC 1 cut(s) 488
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 4 cut(s) 211, 226, 732, 787
HpyF10VI GCNNNNNNNGC 1 cut(s) 793
HpyF3I CTNAG 7 cut(s) 38, 102, 483, 653, 671, 797, 807
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 197, 791
Kzo9I GATC 5 cut(s) 22, 292, 471, 636, 741
LmnI GCTCC 3 cut(s) 331, 479, 499
LpnPI CCDG 9 cut(s) 75, 114, 225, 248, 252, 393, 428, 455, 665
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 511
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 159
MalI GATC 5 cut(s) 24, 294, 473, 638, 743
MboI GATC 5 cut(s) 22, 292, 471, 636, 741
MboII GAAGA 3 cut(s) 62, 605, 646
MflI RGATCY 2 cut(s) 22, 636
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 6 cut(s) 216, 254, 411, 602, 708, 762
MmeI TCCRAC 2 cut(s) 566, 782
MnlI CCTC 6 cut(s) 53, 306, 308, 478, 630, 640
MseI TTAA 7 cut(s) 81, 288, 350, 534, 711, 761, 765
MslI CAYNNNNRTG 1 cut(s) 722
MspR9I CCNGG 2 cut(s) 240, 443
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 2 cut(s) 240, 443
MwoI GCNNNNNNNGC 1 cut(s) 793
NdeII GATC 5 cut(s) 22, 292, 471, 636, 741
NlaIII CATG 2 cut(s) 197, 791
NlaIV GGNNCC 1 cut(s) 24
NspI RCATGY 1 cut(s) 791
OliI CACNNNNGTG 1 cut(s) 722
PacI TTAATTAA 1 cut(s) 765
PctI GAATGC 1 cut(s) 213
PfeI GAWTC 2 cut(s) 97, 689
PkrI GCNGC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 649
PshBI ATTAAT 1 cut(s) 711
Psp5II RGGWCCY 1 cut(s) 649
Psp6I CCWGG 2 cut(s) 238, 441
PspGI CCWGG 2 cut(s) 238, 441
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 2 cut(s) 377, 649
PspPPI RGGWCCY 1 cut(s) 649
PsuI RGATCY 2 cut(s) 22, 636
RsaI GTAC 1 cut(s) 755
RsaNI GTAC 1 cut(s) 754
RseI CAYNNNNRTG 1 cut(s) 722
SaqAI TTAA 7 cut(s) 81, 288, 350, 534, 711, 761, 765
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 5 cut(s) 22, 292, 471, 636, 741
Sau96I GGNCC 2 cut(s) 377, 649
ScrFI CCNGG 2 cut(s) 240, 443
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 1 cut(s) 511
SinI GGWCC 2 cut(s) 377, 649
SmiMI CAYNNNNRTG 1 cut(s) 722
SmlI CTYRAG 2 cut(s) 147, 155
SmoI CTYRAG 2 cut(s) 147, 155
Sse9I AATT 6 cut(s) 216, 254, 411, 602, 708, 762
SsiI CCGC 1 cut(s) 452
StyD4I CCNGG 2 cut(s) 238, 441
StyI CCWWGG 1 cut(s) 10
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 574
TasI AATT 6 cut(s) 216, 254, 411, 602, 708, 762
TfiI GAWTC 2 cut(s) 97, 689
Tru1I TTAA 7 cut(s) 81, 288, 350, 534, 711, 761, 765
Tru9I TTAA 7 cut(s) 81, 288, 350, 534, 711, 761, 765
TscAI CASTG 2 cut(s) 471, 724
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 5 cut(s) 101, 462, 558, 606, 630
TspGWI ACGGA 2 cut(s) 629, 754
TspRI CASTG 2 cut(s) 471, 724
VpaK11BI GGWCC 2 cut(s) 377, 649
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 1 cut(s) 254
XceI RCATGY 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.