Rh3BG177600

Synaptotagmin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001241
Physical Location & Seq
Reverse (-)
15461930 .. 15465974
4045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG177600.1

Sequence Viewer

Length: 1707 bp
ATGAGACATCTGTATTTCGTATTCGAGTTTATTGGATTTCTTATTGGGTTTCCGATCGGTCTTCTACTGGGTTTCTTCATATTCATATACTCATCACAGCCTGAGGATGTGAAGGATCCAGATATAAAATCACTAAATGAGTGTGATCCAAACTCTCTGGTTGATCTTTTCTCAGAGATTCCTCCATGGGTGAAGCACCCTGACTTTGAAAGAATTGATTGGTTGAACAAGGCTTTACATGATATGTGGCCTTACCTTGATAAGGCAATATGCAAGATTATCAGAGAAACAGCAGAGCCAATATTTGCAGAGTACGTTGGAAAATATCAGATAAGATCCATAGGATTTCAAAGCTTGAATCTTGGAAGTCTTCCTCCTACAATTTATGGTATTAGAGTGCACGAAACCAATGAAAATGAACTAGTAATTGAACCTGCTATTAGATGGGCAGGAATTCCACACATAAATGTTGTGGTAAACATATTGTCAGTTCGACTTATAGTTCAGCTGATGGATGTCCAAGTATTTGCAACGCCAAGGATGATCTTAAGGCCTCTTGTACCAACATTCCCATGTTTTGGAAACATAACAATGACTTTGATAGACAAGCCACATGTGGACTTTGGACTCAGATTACTGGGAGGGGATGTTATGGCAATCCCCGGTTTCTATCAATTTGTTCAGGAATATATAAGAAATCAAGTTGCTAGCCTTTATTTATGGCCCCAAACTTTGAACATACCAATTCTTCAGGGTTCATTATCAGGAACTATAAAGAAGCCTGTAGGCATACTGCATGTCAAGGTTGTAAGAGCTAAGAAACTCTTGAAGGCGGACATCATTGGAAGATCTGATCCTTATGTTAAAATCAAACTAACCGGGGAGAGGCTTCCATCAAAGAAAACTAGCATTAAGATGAGGAACTTGAACCCTGAATGGAATGAGAATTTCAAGCTTACAGTCAAAGATCCAGAGTCCCAATTCATTCAGTTCAATGTTTTCGACTGGGATCAGATTGGGACGCATGACCCTTTGGGAATGCAAATTCTTCCACTGAAGTTGCTAACTCCATATGACACACAAGAATTTACGCTTGATTTAGTAAACAGCACAAACCCTTATGATCCTCAAAACAAGAAAAAAAGAGGCCAACTTATGGTGGAGTTGACATATAATCCTTTTATAGAAGAGAGTGGTAGTGGAATATATAACAGTGAACCTTTGGATGGAGATAAAGTGGTAGATGGAAAAAAGCTTGGAATTAAAAGCCAAGTTAGGAGCCGAAAGCCATCCATGTCCGTAGACATGTCTTCACAAATAGATGCAGCTGGTCTGCTTTTGGTTACAGTTCAAGGAGCAGAAGAACTTGAGAGCAAGCTTTACGATAACCCTAATCCTTACGTACTGGTTAGGTTTTCAGGAGAAAAGAGGAAAACCAAGATGATAAAGAGATCCCATCGGCCATATTGGAATGAAGAATTTCAGTTTGTGGTAGAAGAAGCGACTTTGAAGGAGAAGATTCGTTTTGAAGTAAAGAGTAAGAAAAGAAACCTTTTCGCTTATCGTTTCCGAAAAAAGGAATTGTTGGGGTACGTTGACATCAATTTTAGTGATGTGGTATACAATGGACGCATTAGAGGCAAGTACAATTTGATTAACTCGAAAAATGCAGTGATACATATCGAGTTGCAGTGGAGCACCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

568

Amino Acids

65.4

Weight (kDa)

8.97

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 68 - 249 7.9e-17 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 263 - 361 4.4e-24 C2 domain
C2 PF00168 445 - 551 8.5e-17 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 442
AccB7I CCANNNNNTGG 2 cut(s) 578, 1156
AccI GTMKAC 2 cut(s) 1302, 1620
AciI CCGC 1 cut(s) 833
AclWI GGATC 9 cut(s) 110, 123, 140, 330, 848, 962, 1017, 1118, 1446
AcoI YGGCCR 1 cut(s) 1460
AcsI RAATTY 5 cut(s) 453, 946, 1044, 1085, 1478
AcuI CTGAAG 2 cut(s) 734, 1076
AcvI CACGTG 1 cut(s) 1704
AdeI CACNNNGTG 1 cut(s) 1704
AfaI GTAC 5 cut(s) 314, 561, 1404, 1592, 1646
AfiI CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
AflII CTTAAG 1 cut(s) 547
AflIII ACRYGT 2 cut(s) 613, 1305
AhlI ACTAGT 1 cut(s) 421
AluBI AGCT 7 cut(s) 354, 508, 815, 955, 1255, 1328, 1378
AluI AGCT 7 cut(s) 354, 508, 815, 955, 1255, 1328, 1378
Alw21I GWGCWC 2 cut(s) 402, 1700
Alw44I GTGCAC 1 cut(s) 398
AlwI GGATC 9 cut(s) 110, 123, 140, 330, 848, 962, 1017, 1118, 1446
AoxI GGCC 5 cut(s) 248, 551, 722, 1147, 1460
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 1325
ApoI RAATTY 5 cut(s) 453, 946, 1044, 1085, 1478
Asp700I GAANNNNTTC 1 cut(s) 1479
AspS9I GGNCC 1 cut(s) 723
AsuC2I CCSGG 2 cut(s) 663, 880
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 707
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 402
BamHI GGATCC 1 cut(s) 115
BbrPI CACGTG 1 cut(s) 1704
BbsI GAAGAC 3 cut(s) 53, 362, 1302
Bbv12I GWGCWC 2 cut(s) 402, 1700
BbvI GCAGC 1 cut(s) 1337
BccI CCATC 7 cut(s) 438, 505, 901, 1220, 1238, 1297, 1464
BcnI CCSGG 2 cut(s) 663, 880
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 3 cut(s) 422, 708, 906
BfmI CTRYAG 1 cut(s) 783
BfrI CTTAAG 1 cut(s) 547
BfuAI ACCTGC 1 cut(s) 442
BglII AGATCT 1 cut(s) 848
BisI GCNGC 1 cut(s) 1326
BlsI GCNGC 1 cut(s) 1327
Bme1390I CCNGG 2 cut(s) 663, 880
BmgT120I GGNCC 1 cut(s) 723
BmiI GGNNCC 3 cut(s) 117, 725, 1280
BmrFI CCNGG 2 cut(s) 663, 880
BmrI ACTGGG 3 cut(s) 77, 647, 1015
BmsI GCATC 1 cut(s) 1312
BmtI GCTAGC 1 cut(s) 711
BmuI ACTGGG 3 cut(s) 77, 647, 1015
BpiI GAAGAC 3 cut(s) 53, 362, 1302
BpuEI CTTGAG 1 cut(s) 1388
BpuMI CCSGG 2 cut(s) 663, 880
BsaAI YACGTR 2 cut(s) 1402, 1704
BsaBI GATNNNNATC 1 cut(s) 1679
BsaJI CCNNGG 4 cut(s) 185, 536, 661, 879
BsaXI ACNNNNNCTCC 4 cut(s) 633, 663, 1221, 1251
Bsc4I CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
Bse1I ACTGG 4 cut(s) 72, 642, 1010, 1410
Bse21I CCTNAGG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 1679
BseDI CCNNGG 4 cut(s) 185, 536, 661, 879
BseGI GGATG 6 cut(s) 112, 520, 546, 652, 1231, 1289
BseJI GATNNNNATC 1 cut(s) 1679
BseLI CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
BseMII CTCAG 3 cut(s) 93, 186, 643
BseNI ACTGG 4 cut(s) 72, 642, 1010, 1410
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 1 cut(s) 1337
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 402, 1700
BsiSI CCGG 2 cut(s) 663, 879
BslFI GGGAC 2 cut(s) 961, 1033
BslI CCNNNNNNNGG 6 cut(s) 262, 578, 885, 1156, 1226, 1576
BsmFI GGGAC 2 cut(s) 961, 1033
BsmI GAATGC 1 cut(s) 1044
BsnI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
Bsp1286I GDGCHC 2 cut(s) 402, 1700
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 1 cut(s) 833
BspANI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
BspCNI CTCAG 3 cut(s) 94, 185, 642
BspLI GGNNCC 3 cut(s) 117, 725, 1280
BspMI ACCTGC 1 cut(s) 442
BspOI GCTAGC 1 cut(s) 711
BspPI GGATC 9 cut(s) 110, 123, 140, 330, 848, 962, 1017, 1118, 1446
BspTI CTTAAG 1 cut(s) 547
BsrI ACTGG 4 cut(s) 72, 642, 1010, 1410
BssECI CCNNGG 4 cut(s) 185, 536, 661, 879
BssNAI GTATAC 1 cut(s) 1621
BssT1I CCWWGG 2 cut(s) 185, 536
Bst1107I GTATAC 1 cut(s) 1621
Bst4CI ACNGT 3 cut(s) 961, 1214, 1348
Bst6I CTCTTC 1 cut(s) 1182
BstAFI CTTAAG 1 cut(s) 547
BstBAI YACGTR 2 cut(s) 1402, 1704
BstC8I GCNNGC 2 cut(s) 709, 1376
BstDEI CTNAG 4 cut(s) 102, 172, 629, 816
BstDSI CCRYGG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 6 cut(s) 112, 520, 546, 652, 1231, 1289
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 1638
BstNSI RCATGY 3 cut(s) 617, 800, 1309
BstSCI CCNGG 2 cut(s) 661, 878
BstSFI CTRYAG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 402
BstSNI TACGTA 1 cut(s) 1402
BstV1I GCAGC 1 cut(s) 1337
BstV2I GAAGAC 3 cut(s) 53, 362, 1302
BstX2I RGATCY 5 cut(s) 115, 335, 848, 967, 1451
BstYI RGATCY 5 cut(s) 115, 335, 848, 967, 1451
BstZ17I GTATAC 1 cut(s) 1621
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 5 cut(s) 250, 553, 724, 1149, 1462
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 6 cut(s) 112, 520, 546, 652, 1231, 1289
BtsI GCAGTG 2 cut(s) 1677, 1697
BtsIMutI CAGTG 4 cut(s) 1052, 1219, 1677, 1697
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 2 cut(s) 709, 1376
Cfr13I GGNCC 1 cut(s) 723
CseI GACGC 2 cut(s) 1030, 1638
Csp6I GTAC 5 cut(s) 313, 560, 1403, 1591, 1645
CspCI CAANNNNNGTGG 2 cut(s) 1041, 1076
CviAII CATG 8 cut(s) 186, 239, 573, 614, 797, 1025, 1294, 1306
CviQI GTAC 5 cut(s) 313, 560, 1403, 1591, 1645
DdeI CTNAG 4 cut(s) 102, 172, 629, 816
DraIII CACNNNGTG 1 cut(s) 1704
EaeI YGGCCR 1 cut(s) 1460
Eam1104I CTCTTC 1 cut(s) 1182
EarI CTCTTC 1 cut(s) 1182
EciI GGCGGA 1 cut(s) 848
Eco105I TACGTA 1 cut(s) 1402
Eco130I CCWWGG 2 cut(s) 185, 536
Eco147I AGGCCT 1 cut(s) 553
Eco57I CTGAAG 2 cut(s) 734, 1076
Eco72I CACGTG 1 cut(s) 1704
Eco81I CCTNAGG 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 185, 536
ErhI CCWWGG 2 cut(s) 185, 536
FaeI CATG 8 cut(s) 189, 242, 576, 617, 800, 1028, 1297, 1309
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FaqI GGGAC 2 cut(s) 961, 1033
FatI CATG 8 cut(s) 185, 238, 572, 613, 796, 1024, 1293, 1305
FauNDI CATATG 1 cut(s) 1072
FblI GTMKAC 2 cut(s) 1302, 1620
Fnu4HI GCNGC 1 cut(s) 1326
FokI GGATG 6 cut(s) 119, 527, 553, 659, 1238, 1276
Fsp4HI GCNGC 1 cut(s) 1326
FspBI CTAG 3 cut(s) 422, 708, 906
GluI GCNGC 1 cut(s) 1326
HaeIII GGCC 5 cut(s) 250, 553, 724, 1149, 1462
HapII CCGG 2 cut(s) 663, 879
HgaI GACGC 2 cut(s) 1030, 1638
Hin1II CATG 8 cut(s) 189, 242, 576, 617, 800, 1028, 1297, 1309
HincII GTYRAC 2 cut(s) 1167, 1597
HindII GTYRAC 2 cut(s) 1167, 1597
HindIII AAGCTT 4 cut(s) 352, 953, 1253, 1376
HinfI GANTC 5 cut(s) 178, 358, 627, 974, 1519
HpaII CCGG 2 cut(s) 663, 879
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 9 cut(s) 400, 478, 619, 1105, 1167, 1217, 1303, 1597, 1621
Hpy188I TCNGA 8 cut(s) 54, 175, 284, 330, 632, 853, 1014, 1571
Hpy188III TCNNGA 6 cut(s) 119, 683, 765, 826, 971, 1419
Hpy8I GTNNAC 9 cut(s) 400, 478, 619, 1105, 1167, 1217, 1303, 1597, 1621
HpyAV CCTTC 3 cut(s) 106, 823, 1504
HpyCH4III ACNGT 3 cut(s) 961, 1214, 1348
HpyCH4IV ACGT 4 cut(s) 315, 1401, 1593, 1703
HpyCH4V TGCA 9 cut(s) 273, 308, 400, 530, 796, 1042, 1325, 1670, 1690
HpyF10VI GCNNNNNNNGC 1 cut(s) 1638
HpyF3I CTNAG 4 cut(s) 102, 172, 629, 816
HpySE526I ACGT 4 cut(s) 315, 1401, 1593, 1703
Hsp92II CATG 8 cut(s) 189, 242, 576, 617, 800, 1028, 1297, 1309
LmnI GCTCC 3 cut(s) 1278, 1355, 1695
Lsp1109I GCAGC 1 cut(s) 1337
LweI GCATC 1 cut(s) 1312
MaeI CTAG 3 cut(s) 422, 708, 906
MaeII ACGT 4 cut(s) 315, 1401, 1593, 1703
MaeIII GTNAC 1 cut(s) 1342
MflI RGATCY 5 cut(s) 115, 335, 848, 967, 1451
MhlI GDGCHC 2 cut(s) 402, 1700
MlyI GAGTC 2 cut(s) 621, 983
MmeI TCCRAC 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 1479
MseI TTAA 5 cut(s) 548, 864, 912, 1263, 1656
MslI CAYNNNNRTG 4 cut(s) 465, 571, 590, 914
MspA1I CMGCKG 2 cut(s) 508, 1328
MspCI CTTAAG 1 cut(s) 547
MspI CCGG 2 cut(s) 663, 879
MspR9I CCNGG 2 cut(s) 663, 880
Mva1269I GAATGC 1 cut(s) 1044
MwoI GCNNNNNNNGC 1 cut(s) 1638
NciI CCSGG 2 cut(s) 663, 880
NcoI CCATGG 1 cut(s) 185
NdeI CATATG 1 cut(s) 1072
NheI GCTAGC 1 cut(s) 707
NlaIII CATG 8 cut(s) 189, 242, 576, 617, 800, 1028, 1297, 1309
NlaIV GGNNCC 3 cut(s) 117, 725, 1280
NspI RCATGY 3 cut(s) 617, 800, 1309
PceI AGGCCT 1 cut(s) 553
PciI ACATGT 2 cut(s) 613, 1305
PctI GAATGC 1 cut(s) 1044
PdmI GAANNNNTTC 1 cut(s) 1479
PfeI GAWTC 3 cut(s) 178, 358, 1519
PflMI CCANNNNNTGG 2 cut(s) 578, 1156
PkrI GCNGC 1 cut(s) 1327
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 2 cut(s) 621, 982
PmaCI CACGTG 1 cut(s) 1704
PmlI CACGTG 1 cut(s) 1704
PpsI GAGTC 2 cut(s) 621, 982
Ppu21I YACGTR 2 cut(s) 1402, 1704
PscI ACATGT 2 cut(s) 613, 1305
PspCI CACGTG 1 cut(s) 1704
PspN4I GGNNCC 3 cut(s) 117, 725, 1280
PspPI GGNCC 1 cut(s) 723
PsuI RGATCY 5 cut(s) 115, 335, 848, 967, 1451
PvuI CGATCG 1 cut(s) 57
PvuII CAGCTG 2 cut(s) 508, 1328
RsaI GTAC 5 cut(s) 314, 561, 1404, 1592, 1646
RsaNI GTAC 5 cut(s) 313, 560, 1403, 1591, 1645
RseI CAYNNNNRTG 4 cut(s) 465, 571, 590, 914
SaqAI TTAA 5 cut(s) 548, 864, 912, 1263, 1656
SatI GCNGC 1 cut(s) 1326
Sau96I GGNCC 1 cut(s) 723
SchI GAGTC 2 cut(s) 621, 983
ScrFI CCNGG 2 cut(s) 663, 880
SduI GDGCHC 2 cut(s) 402, 1700
SfaNI GCATC 1 cut(s) 1312
SfcI CTRYAG 1 cut(s) 783
SmiMI CAYNNNNRTG 4 cut(s) 465, 571, 590, 914
SmlI CTYRAG 2 cut(s) 547, 1367
SmoI CTYRAG 2 cut(s) 547, 1367
SnaBI TACGTA 1 cut(s) 1402
SpeI ACTAGT 1 cut(s) 421
SseBI AGGCCT 1 cut(s) 553
SsiI CCGC 1 cut(s) 833
SspI AATATT 1 cut(s) 303
SspMI CTAG 3 cut(s) 422, 708, 906
StuI AGGCCT 1 cut(s) 553
StyD4I CCNGG 2 cut(s) 661, 878
StyI CCWWGG 2 cut(s) 185, 536
TaaI ACNGT 3 cut(s) 961, 1214, 1348
TaiI ACGT 4 cut(s) 318, 1404, 1596, 1706
TaqI TCGA 5 cut(s) 24, 493, 1002, 1661, 1683
TaqII GACCGA 1 cut(s) 47
TatI WGTACW 1 cut(s) 1644
TfiI GAWTC 3 cut(s) 178, 358, 1519
Tru1I TTAA 5 cut(s) 548, 864, 912, 1263, 1656
Tru9I TTAA 5 cut(s) 548, 864, 912, 1263, 1656
TscAI CASTG 4 cut(s) 1059, 1219, 1677, 1697
TseI GCWGC 1 cut(s) 1325
TspDTI ATGAA 7 cut(s) 67, 73, 426, 432, 747, 973, 1488
TspGWI ACGGA 1 cut(s) 1288
TspRI CASTG 4 cut(s) 1059, 1219, 1677, 1697
Van91I CCANNNNNTGG 2 cut(s) 578, 1156
Vha464I CTTAAG 1 cut(s) 547
VneI GTGCAC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 5 cut(s) 453, 946, 1044, 1085, 1478
XceI RCATGY 3 cut(s) 617, 800, 1309
XmiI GTMKAC 2 cut(s) 1302, 1620
XmnI GAANNNNTTC 1 cut(s) 1479
XspI CTAG 3 cut(s) 422, 708, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.