Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Forward (+)

31538849 .. 31540063

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1236600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGACGAACAACGAAGATCCGCAATCGCAATCGACGAAGAAAACCAGAGAGTTGCCGAATCTGTCGGAGTGCCATTGTTGCCACCTGAGAGTCGACATTGCCAACGCCAGCGCCAAGAGCAAGCTTCACATCCTCTACAGCGAGTGGCGCGTCGTCCTCCTCTGCAAGAAATGCCTCTCGCGGGTCGAGTCATCGGAGCTCTGCTCCTACTGCTTCGCCGCCACGTCGCCGTCGCTGGAGGACTCCTTCAATTGCTGCCAGTGTAACCGGAGAGTACACAGGCATTGCGATTCTGAGTATCGAGGGATTGCGCTGTTGTCTCAGGATTCTTGCTTGGCGGTGGAGGTTGGGGTTTGCGCCGATTGCTGGCTGCCGGAGTCGCTGGCGCGGTGGAGAGGGTTTATGAGGAGTCAGAAGGCGCGAAGAAGTGGAAAAGGGAGAGCTTGTTTGGGATTGGGGAAATATAGGGTTTCGGCCGTGCTGGATGGCAGGACAATTCGTGATGTGTCTGGTGCTGAAGAGGGCTCAAAGGATGTGGCTTTCGATGTCGATGACGATGATGATGATGATAGTGGGCATTTGACTGCCATGAATAGCTCTGCTAAGAAGCTGTGTTCGCCAAATTTGAGTGTGTGTGTTTGTGATTCGTCGACTGGTGTTGGTTGTTTGAAGCTGGATATCGAAGAGGAGAATGAGGACGATGACGGGCTGTTGATCGAAGGACAAGGGAGCAGCTCCAATGGCGTTGATGCTCTCAATAAACAAGAGCTAGATGAATGTGTGTGTGTTACAACGCCGAAAGACAAGAGGCGCAATTCTAAACTTGATCCTTTTTACTTCAAGTACAGGAAAAGGAGCATGGTTAATCAGTCTGTGGTAACATATAAGAGAAGGCCCAAAAAGCTCAATCCTTGTTCTATGTTAACATATAAGAGAAGGAGACCCAAAGGCCACCTCTTTGCTTGTTATATGTTAACATATAAGAGACGGAGACCCACAATCCTATATGATCGTTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.3

Weight (kDa)

8.61

Isoelectric Point (pI)

75.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	93, 650
AccII	CGCG	4 cut(s)	150, 181, 388, 421
AciI	CCGC	5 cut(s)	20, 181, 219, 338, 388
AclWI	GGATC	2 cut(s)	11, 821
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	2 cut(s)	276, 845
AfiI	CCNNNNNNNGG	2 cut(s)	181, 366
AgsI	TTSAA	3 cut(s)	250, 670, 841
AjiI	CACGTC	1 cut(s)	225
AluBI	AGCT	9 cut(s)	124, 199, 443, 597, 610, 673, 735, 769, 904
AluI	AGCT	9 cut(s)	124, 199, 443, 597, 610, 673, 735, 769, 904
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	4 cut(s)	324, 934, 979, 985
AlwI	GGATC	2 cut(s)	11, 821
AoxI	GGCC	3 cut(s)	474, 893, 949
ApeKI	GCWGC	3 cut(s)	255, 370, 732
ApoI	RAATTY	1 cut(s)	622
AspLEI	GCGC	7 cut(s)	113, 150, 313, 359, 388, 421, 813
AspS9I	GGNCC	1 cut(s)	894
BanII	GRGCYC	2 cut(s)	201, 527
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	242, 357, 744
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	2 cut(s)	214, 461
BcoDI	GTCTC	4 cut(s)	324, 934, 979, 985
BfaI	CTAG	1 cut(s)	770
BfmI	CTRYAG	1 cut(s)	136
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	4 cut(s)	219, 256, 371, 733
BlsI	GCNGC	4 cut(s)	220, 257, 372, 734
BmgBI	CACGTC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	894
BmsI	GCATC	1 cut(s)	739
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	257
BsaI	GGTCTC	2 cut(s)	934, 985
BsaWI	WCCGGW	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 366
Bse1I	ACTGG	2 cut(s)	259, 658
Bse3DI	GCAATG	2 cut(s)	96, 283
BseGI	GGATG	3 cut(s)	129, 490, 538
BseLI	CCNNNNNNNGG	2 cut(s)	181, 366
BseMI	GCAATG	2 cut(s)	96, 283
BseMII	CTCAG	3 cut(s)	77, 285, 335
BseNI	ACTGG	2 cut(s)	259, 658
BseRI	GAGGAG	3 cut(s)	149, 421, 701
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	3 cut(s)	242, 357, 744
Bsh1236I	CGCG	4 cut(s)	150, 181, 388, 421
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	476, 895, 951
BsiEI	CGRYCG	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	268, 374
BslI	CCNNNNNNNGG	2 cut(s)	181, 366
BsmAI	GTCTC	4 cut(s)	324, 934, 979, 985
BsmBI	CGTCTC	1 cut(s)	979
BsnI	GGCC	3 cut(s)	476, 895, 951
Bso31I	GGTCTC	2 cut(s)	934, 985
Bsp1286I	GDGCHC	2 cut(s)	201, 527
Bsp143I	GATC	4 cut(s)	16, 714, 826, 1009
BspACI	CCGC	5 cut(s)	20, 181, 219, 338, 388
BspANI	GGCC	3 cut(s)	476, 895, 951
BspCNI	CTCAG	3 cut(s)	78, 286, 334
BspFNI	CGCG	4 cut(s)	150, 181, 388, 421
BspPI	GGATC	2 cut(s)	11, 821
BspTNI	GGTCTC	2 cut(s)	934, 985
BsrDI	GCAATG	2 cut(s)	96, 283
BsrI	ACTGG	2 cut(s)	259, 658
BssMI	GATC	4 cut(s)	16, 714, 826, 1009
Bst6I	CTCTTC	2 cut(s)	513, 678
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstC8I	GCNNGC	4 cut(s)	109, 122, 368, 384
BstDEI	CTNAG	4 cut(s)	86, 294, 321, 603
BstF5I	GGATG	3 cut(s)	129, 490, 538
BstFNI	CGCG	4 cut(s)	150, 181, 388, 421
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	7 cut(s)	113, 150, 313, 359, 388, 421, 813
BstKTI	GATC	4 cut(s)	19, 717, 829, 1012
BstMAI	GTCTC	4 cut(s)	324, 934, 979, 985
BstMBI	GATC	4 cut(s)	16, 714, 826, 1009
BstMCI	CGRYCG	1 cut(s)	477
BstSFI	CTRYAG	1 cut(s)	136
BstUI	CGCG	4 cut(s)	150, 181, 388, 421
BstV1I	GCAGC	3 cut(s)	242, 357, 744
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BstZI	CGGCCG	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	476, 895, 951
BtrI	CACGTC	1 cut(s)	225
BtsCI	GGATG	3 cut(s)	129, 490, 538
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	4 cut(s)	109, 122, 368, 384
CfoI	GCGC	7 cut(s)	113, 150, 313, 359, 388, 421, 813
Cfr13I	GGNCC	1 cut(s)	894
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	275, 844
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	2 cut(s)	589, 859
CviQI	GTAC	2 cut(s)	275, 844
DdeI	CTNAG	4 cut(s)	86, 294, 321, 603
DpnI	GATC	4 cut(s)	18, 716, 828, 1011
DpnII	GATC	4 cut(s)	16, 714, 826, 1009
EaeI	YGGCCR	1 cut(s)	474
EagI	CGGCCG	1 cut(s)	474
Eam1104I	CTCTTC	2 cut(s)	513, 678
EarI	CTCTTC	2 cut(s)	513, 678
Ecl136II	GAGCTC	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	474
Eco24I	GRGCYC	2 cut(s)	201, 527
Eco31I	GGTCTC	2 cut(s)	934, 985
Eco32I	GATATC	1 cut(s)	679
Eco52I	CGGCCG	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	537
EcoICRI	GAGCTC	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	679
EcoT38I	GRGCYC	2 cut(s)	201, 527
Esp3I	CGTCTC	1 cut(s)	979
FaeI	CATG	2 cut(s)	592, 862
FatI	CATG	2 cut(s)	588, 858
FauI	CCCGC	1 cut(s)	174
FblI	GTMKAC	2 cut(s)	93, 650
Fnu4HI	GCNGC	4 cut(s)	219, 256, 371, 733
FokI	GGATG	3 cut(s)	116, 497, 545
FriOI	GRGCYC	2 cut(s)	201, 527
Fsp4HI	GCNGC	4 cut(s)	219, 256, 371, 733
FspBI	CTAG	1 cut(s)	770
GlaI	GCGC	7 cut(s)	112, 149, 312, 358, 387, 420, 812
GluI	GCNGC	4 cut(s)	219, 256, 371, 733
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	476, 895, 951
HapII	CCGG	2 cut(s)	268, 374
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	7 cut(s)	113, 150, 313, 359, 388, 421, 813
Hin1II	CATG	2 cut(s)	592, 862
Hin6I	GCGC	7 cut(s)	111, 148, 311, 357, 386, 419, 811
HinP1I	GCGC	7 cut(s)	111, 148, 311, 357, 386, 419, 811
HincII	GTYRAC	4 cut(s)	94, 651, 924, 975
HindII	GTYRAC	4 cut(s)	94, 651, 924, 975
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	9 cut(s)	58, 90, 188, 242, 290, 326, 377, 409, 644
HpaI	GTTAAC	2 cut(s)	924, 975
HpaII	CCGG	2 cut(s)	268, 374
Hpy166II	GTNNAC	5 cut(s)	94, 277, 651, 924, 975
Hpy188I	TCNGA	4 cut(s)	67, 196, 295, 414
Hpy188III	TCNNGA	3 cut(s)	323, 500, 1020
Hpy8I	GTNNAC	5 cut(s)	94, 277, 651, 924, 975
Hpy99I	CGWCG	5 cut(s)	37, 155, 229, 235, 652
HpyAV	CCTTC	5 cut(s)	256, 409, 713, 885, 930
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	165
HpyF3I	CTNAG	4 cut(s)	86, 294, 321, 603
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	592, 862
HspAI	GCGC	7 cut(s)	111, 148, 311, 357, 386, 419, 811
KspAI	GTTAAC	2 cut(s)	924, 975
Kzo9I	GATC	4 cut(s)	16, 714, 826, 1009
LmnI	GCTCC	5 cut(s)	196, 209, 729, 740, 855
Lsp1109I	GCAGC	3 cut(s)	242, 357, 744
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	3 cut(s)	263, 787, 877
MalI	GATC	4 cut(s)	18, 716, 828, 1011
MboI	GATC	4 cut(s)	16, 714, 826, 1009
MboII	GAAGA	5 cut(s)	26, 49, 435, 530, 695
MfeI	CAATTG	1 cut(s)	250
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	201, 527
MluCI	AATT	4 cut(s)	250, 495, 622, 814
MlyI	GAGTC	5 cut(s)	99, 197, 236, 386, 418
MmeI	TCCRAC	1 cut(s)	45
MseI	TTAA	3 cut(s)	864, 923, 974
MspI	CCGG	2 cut(s)	268, 374
MunI	CAATTG	1 cut(s)	250
MvnI	CGCG	4 cut(s)	150, 181, 388, 421
NdeII	GATC	4 cut(s)	16, 714, 826, 1009
NlaIII	CATG	2 cut(s)	592, 862
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	4 cut(s)	58, 290, 326, 644
PkrI	GCNGC	4 cut(s)	220, 257, 372, 734
PleI	GAGTC	5 cut(s)	98, 196, 236, 385, 417
PpsI	GAGTC	5 cut(s)	98, 196, 236, 385, 417
Psp124BI	GAGCTC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	894
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	2 cut(s)	276, 845
RsaNI	GTAC	2 cut(s)	275, 844
SacI	GAGCTC	1 cut(s)	201
SalI	GTCGAC	2 cut(s)	92, 649
SaqAI	TTAA	3 cut(s)	864, 923, 974
SatI	GCNGC	4 cut(s)	219, 256, 371, 733
Sau3AI	GATC	4 cut(s)	16, 714, 826, 1009
Sau96I	GGNCC	1 cut(s)	894
SchI	GAGTC	5 cut(s)	99, 197, 236, 386, 418
SduI	GDGCHC	2 cut(s)	201, 527
SfaNI	GCATC	1 cut(s)	739
SfcI	CTRYAG	1 cut(s)	136
Sse9I	AATT	4 cut(s)	250, 495, 622, 814
SsiI	CCGC	5 cut(s)	20, 181, 219, 338, 388
SspMI	CTAG	1 cut(s)	770
SstI	GAGCTC	1 cut(s)	201
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	9 cut(s)	32, 93, 186, 301, 543, 549, 650, 681, 717
TasI	AATT	4 cut(s)	250, 495, 622, 814
TatI	WGTACW	2 cut(s)	274, 843
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	4 cut(s)	58, 290, 326, 644
Tru1I	TTAA	3 cut(s)	864, 923, 974
Tru9I	TTAA	3 cut(s)	864, 923, 974
TscAI	CASTG	1 cut(s)	266
TseI	GCWGC	3 cut(s)	255, 370, 732
TspDTI	ATGAA	3 cut(s)	605, 789, 1005
TspGWI	ACGGA	1 cut(s)	1003
TspRI	CASTG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	622
XmiI	GTMKAC	2 cut(s)	93, 650
XspI	CTAG	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.