Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Reverse (-)

777494 .. 780770

Gene Structure 3277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41603

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGACGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAGAGTCGACCTCGCCAAATCCTCCCAGAACAACAAGCTTCAGATTCTCTACAGCGAGTGGCGAATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCCACCGAGCTCTGCTCCTACTGCTTCAACGACTCGTCGTCCGGCCACTGCTTCTCTTGCCGCCAGTGCAGGCGGCGAGTCCACAGGGACTGCGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCGGGTCGTCGTCTGCGGCCGCCGACGAGGTCTCTGTCTGCGCCGATTGCTGGGTGTCGGAGTCGCTGGCCAGGTGGAGGAGAAGTAGAAACGTCGGTAGTGGTAGAAAGAGTAGGGCGGATTTGGGATTGGGGAGATCTAGGGTTTTGAAGTATGAGAGGAAATGTGATCCAAATTCGACTGATTCATCTACAGAGGAGGAGGCCGGGTGCTTGAGACTTGATGGTGTTGAAGAAGAAGAAGAAGAAGAGATTGGGGATGATGAGCCGTTGAAGGAAGGACAAGGGAGTTGCTCAAATGGTGTCGAATCGGAGTCTCCACCGTCTTATAAACAAGATGACTGCAACTGCATCGCTTTGCCGAAAGTCGAAATTGGGAATGCAAAGCTTGATCCTTATTATTTCAAGTACAGGAGGAGGAGCAGTGTTGATCTGTCTCTGTTGACATACAAGAGGAGGAGCATTGTTGACTGCTTTAAGATTGATTGCCCTCTGTTGACATATAAGAGGAGAGGCAGTGTTGACTATCGGTTTATGTTTACGTATAAGAGGAGGAGGAACTTTGATCAATCTATGTTGACATATAAGAGGAGGAGACCTGAAATCGTTTACGCGAGTTCAAAGATGCAGCTCGAGGGTCAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

36.44

Weight (kDa)

8.58

Isoelectric Point (pI)

84.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	2 cut(s)	177, 920
AciI	CCGC	8 cut(s)	175, 244, 256, 289, 297, 323, 327, 425
AclWI	GGATC	2 cut(s)	470, 692
AcoI	YGGCCR	3 cut(s)	226, 324, 375
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	287, 716
AfiI	CCNNNNNNNGG	3 cut(s)	303, 357, 384
AgsI	TTSAA	6 cut(s)	211, 457, 539, 580, 712, 927
AhdI	GACNNNNNGTC	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	377
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	4 cut(s)	118, 193, 694, 937
AluI	AGCT	4 cut(s)	118, 193, 694, 937
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	5 cut(s)	343, 517, 627, 747, 895
AlwI	GGATC	2 cut(s)	470, 692
AlwNI	CAGNNNCTG	1 cut(s)	273
Ama87I	CYCGRG	2 cut(s)	39, 938
AoxI	GGCC	5 cut(s)	171, 226, 324, 375, 510
ApeKI	GCWGC	3 cut(s)	72, 291, 934
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	2 cut(s)	296, 350
AspS9I	GGNCC	2 cut(s)	172, 306
AsuC2I	CCSGG	2 cut(s)	310, 514
AvaI	CYCGRG	2 cut(s)	39, 938
AvaII	GGWCC	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	59, 303, 946
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	2 cut(s)	284, 559
BcgI	CGANNNNNNTGC	2 cut(s)	640, 674
BciT130I	CCWGG	1 cut(s)	379
BclI	TGATCA	1 cut(s)	871
BcnI	CCSGG	2 cut(s)	310, 514
BcoDI	GTCTC	5 cut(s)	343, 517, 627, 747, 895
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	2 cut(s)	130, 498
BfoI	RGCGCY	1 cut(s)	297
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	8 cut(s)	73, 244, 257, 292, 297, 324, 327, 935
BlsI	GCNGC	8 cut(s)	74, 245, 258, 293, 298, 325, 328, 936
Bme1390I	CCNGG	3 cut(s)	310, 379, 514
Bme18I	GGWCC	1 cut(s)	306
BmeRI	GACNNNNNGTC	1 cut(s)	220
BmeT110I	CYCGRG	2 cut(s)	39, 938
BmgT120I	GGNCC	2 cut(s)	172, 306
BmrFI	CCNGG	3 cut(s)	310, 379, 514
BmsI	GCATC	2 cut(s)	666, 921
BpiI	GAAGAC	1 cut(s)	41
BplI	GAGNNNNNCTC	4 cut(s)	75, 107, 182, 214
BpuEI	CTTGAG	1 cut(s)	541
BpuMI	CCSGG	2 cut(s)	310, 514
BsaAI	YACGTR	1 cut(s)	849
BsaI	GGTCTC	2 cut(s)	343, 895
BsaXI	ACNNNNNCTCC	8 cut(s)	376, 406, 500, 530, 715, 745, 808, 838
Bsc4I	CCNNNNNNNGG	3 cut(s)	303, 357, 384
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	3 cut(s)	303, 357, 384
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	247
BseX3I	CGGCCG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	59, 303, 946
BseYI	CCCAGC	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	271
Bsh1236I	CGCG	2 cut(s)	177, 920
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	5 cut(s)	173, 228, 326, 377, 512
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	2 cut(s)	39, 938
BsiSI	CCGG	3 cut(s)	225, 309, 513
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	3 cut(s)	303, 357, 384
BsmAI	GTCTC	5 cut(s)	343, 517, 627, 747, 895
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	5 cut(s)	173, 228, 326, 377, 512
Bso31I	GGTCTC	2 cut(s)	343, 895
BsoBI	CYCGRG	2 cut(s)	39, 938
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	5 cut(s)	443, 475, 697, 736, 871
BspACI	CCGC	8 cut(s)	175, 244, 256, 289, 297, 323, 327, 425
BspANI	GGCC	5 cut(s)	173, 228, 326, 377, 512
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	177, 920
BspPI	GGATC	2 cut(s)	470, 692
BspTNI	GGTCTC	2 cut(s)	343, 895
BsrDI	GCAATG	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	5 cut(s)	443, 475, 697, 736, 871
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	630
Bst6I	CTCTTC	1 cut(s)	549
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	849
BstC8I	GCNNGC	3 cut(s)	175, 254, 375
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	571
BstFNI	CGCG	2 cut(s)	177, 920
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	296, 350
BstKTI	GATC	5 cut(s)	446, 478, 700, 739, 874
BstMAI	GTCTC	5 cut(s)	343, 517, 627, 747, 895
BstMBI	GATC	5 cut(s)	443, 475, 697, 736, 871
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 165, 174, 204, 240, 249, 354
BstNI	CCWGG	1 cut(s)	379
BstSCI	CCNGG	3 cut(s)	308, 377, 512
BstSFI	CTRYAG	2 cut(s)	130, 498
BstSNI	TACGTA	1 cut(s)	849
BstUI	CGCG	2 cut(s)	177, 920
BstV1I	GCAGC	3 cut(s)	59, 303, 946
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BstZI	CGGCCG	1 cut(s)	324
BsuRI	GGCC	5 cut(s)	173, 228, 326, 377, 512
BtgZI	GCGATG	1 cut(s)	643
BtsCI	GGATG	1 cut(s)	571
BtsI	GCAGTG	4 cut(s)	25, 229, 736, 829
BtsIMutI	CAGTG	6 cut(s)	25, 229, 254, 736, 829, 953
Cac8I	GCNNGC	3 cut(s)	175, 254, 375
CaiI	CAGNNNCTG	1 cut(s)	273
CciNI	GCGGCCGC	1 cut(s)	324
CfoI	GCGC	2 cut(s)	296, 350
Cfr13I	GGNCC	2 cut(s)	172, 306
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	286, 715
CviQI	GTAC	2 cut(s)	286, 715
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	5 cut(s)	445, 477, 699, 738, 873
DpnII	GATC	5 cut(s)	443, 475, 697, 736, 871
DriI	GACNNNNNGTC	1 cut(s)	220
EaeI	YGGCCR	3 cut(s)	226, 324, 375
EagI	CGGCCG	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	549
Eam1105I	GACNNNNNGTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	440
Ecl136II	GAGCTC	1 cut(s)	193
EclXI	CGGCCG	1 cut(s)	324
Eco105I	TACGTA	1 cut(s)	849
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	2 cut(s)	343, 895
Eco47I	GGWCC	1 cut(s)	306
Eco52I	CGGCCG	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	39, 938
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	195
FaqI	GGGAC	1 cut(s)	284
FauI	CCCGC	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	871
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	8 cut(s)	73, 244, 257, 292, 297, 324, 327, 935
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	8 cut(s)	73, 244, 257, 292, 297, 324, 327, 935
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	2 cut(s)	295, 349
GluI	GCNGC	8 cut(s)	73, 244, 257, 292, 297, 324, 327, 935
GsaI	CCCAGC	1 cut(s)	361
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	5 cut(s)	173, 228, 326, 377, 512
HapII	CCGG	3 cut(s)	225, 309, 513
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	2 cut(s)	296, 350
Hin6I	GCGC	2 cut(s)	294, 348
HinP1I	GCGC	2 cut(s)	294, 348
HincII	GTYRAC	6 cut(s)	88, 750, 775, 804, 829, 885
HindII	GTYRAC	6 cut(s)	88, 750, 775, 804, 829, 885
HindIII	AAGCTT	2 cut(s)	116, 692
HpaII	CCGG	3 cut(s)	225, 309, 513
Hpy166II	GTNNAC	9 cut(s)	88, 265, 750, 775, 804, 829, 846, 885, 916
Hpy188I	TCNGA	5 cut(s)	83, 123, 283, 367, 619
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	9 cut(s)	88, 265, 750, 775, 804, 829, 846, 885, 916
Hpy99I	CGWCG	8 cut(s)	10, 13, 16, 182, 223, 319, 335, 404
HpyAV	CCTTC	2 cut(s)	574, 578
HpyCH4III	ACNGT	1 cut(s)	630
HpyCH4IV	ACGT	2 cut(s)	399, 848
HpyCH4V	TGCA	6 cut(s)	159, 252, 651, 657, 689, 934
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 165, 174, 204, 240, 249, 354
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	2 cut(s)	399, 848
HspAI	GCGC	2 cut(s)	294, 348
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	5 cut(s)	443, 475, 697, 736, 871
LmnI	GCTCC	3 cut(s)	203, 726, 765
Lsp1109I	GCAGC	3 cut(s)	59, 303, 946
LweI	GCATC	2 cut(s)	666, 921
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	2 cut(s)	399, 848
MalI	GATC	5 cut(s)	445, 477, 699, 738, 873
MboI	GATC	5 cut(s)	443, 475, 697, 736, 871
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	2 cut(s)	481, 678
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	6 cut(s)	31, 93, 209, 270, 377, 629
MmeI	TCCRAC	1 cut(s)	345
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	1 cut(s)	783
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	3 cut(s)	225, 309, 513
MspR9I	CCNGG	3 cut(s)	310, 379, 514
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	1 cut(s)	379
MvnI	CGCG	2 cut(s)	177, 920
MwoI	GCNNNNNNNGC	7 cut(s)	72, 165, 174, 204, 240, 249, 354
NciI	CCSGG	2 cut(s)	310, 514
NdeII	GATC	5 cut(s)	443, 475, 697, 736, 871
NotI	GCGGCCGC	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	938
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 186
PctI	GAATGC	1 cut(s)	691
PfeI	GAWTC	6 cut(s)	124, 144, 182, 278, 491, 614
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	8 cut(s)	74, 245, 258, 293, 298, 325, 328, 936
PleI	GAGTC	6 cut(s)	31, 92, 209, 269, 376, 628
PpsI	GAGTC	6 cut(s)	31, 92, 209, 269, 376, 628
Ppu21I	YACGTR	1 cut(s)	849
PsiI	TTATAA	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	377
PspPI	GGNCC	2 cut(s)	172, 306
PspXI	VCTCGAGB	1 cut(s)	938
PstNI	CAGNNNCTG	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	443
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	2 cut(s)	287, 716
RsaNI	GTAC	2 cut(s)	286, 715
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	8 cut(s)	73, 244, 257, 292, 297, 324, 327, 935
Sau3AI	GATC	5 cut(s)	443, 475, 697, 736, 871
Sau96I	GGNCC	2 cut(s)	172, 306
SchI	GAGTC	6 cut(s)	31, 93, 209, 270, 377, 629
ScrFI	CCNGG	3 cut(s)	310, 379, 514
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	2 cut(s)	666, 921
SfcI	CTRYAG	2 cut(s)	130, 498
Sfr274I	CTCGAG	1 cut(s)	938
SinI	GGWCC	1 cut(s)	306
SlaI	CTCGAG	1 cut(s)	938
SmlI	CTYRAG	2 cut(s)	520, 938
SmoI	CTYRAG	2 cut(s)	520, 938
SnaBI	TACGTA	1 cut(s)	849
Sse9I	AATT	2 cut(s)	481, 678
SsiI	CCGC	8 cut(s)	175, 244, 256, 289, 297, 323, 327, 425
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	3 cut(s)	308, 377, 512
TaaI	ACNGT	1 cut(s)	630
TaiI	ACGT	2 cut(s)	402, 851
TaqI	TCGA	6 cut(s)	87, 180, 485, 612, 675, 939
TasI	AATT	2 cut(s)	481, 678
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	5 cut(s)	246, 259, 299, 326, 329
TfiI	GAWTC	6 cut(s)	124, 144, 182, 278, 491, 614
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	6 cut(s)	25, 236, 254, 736, 829, 953
TseI	GCWGC	3 cut(s)	72, 291, 934
TspDTI	ATGAA	1 cut(s)	483
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	6 cut(s)	25, 236, 254, 736, 829, 953
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	938
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.