Rh1AG022100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002273
Physical Location & Seq
Forward (+)
4088906 .. 4089448
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG022100.1

Sequence Viewer

Length: 543 bp
ATGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAAAGTCGACCTCGCCAAATCCTCCAAGAACAACAAGCTTCAGATTCTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCAAATCCACCGAGCTCTGCTCCTACTGCTTCAAAGACTCGTCGTTCGGCCACTGCTTCTCTTGCCGCCAGTACAAGCGGCGAGTCCACCGGGATTGTGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCTGGTCGTTGTCTGCTGCCGCCGACCAGGTCTCTGTCTGCGCCGATTGCTGGGTGTCGGAGTTGCTGGCCAGGTGGAGGAGAAGTAGAAACATCAGTAGTAGTGGTAGAAAGAATAGGGCGGATTTGGGATTGGGGAGATCTAGGGTTTTGAATTATGAGAGGAAATGCGATCCAAATTCGACTAATTCGTCTACAGAGGATGGGAGAGGGAGCTCGCCGAACGTCTACGTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.52

Weight (kDa)

9.37

Isoelectric Point (pI)

63.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 493
AccI GTMKAC 3 cut(s) 84, 497, 531
AccII CGCG 1 cut(s) 174
AciI CCGC 8 cut(s) 139, 172, 241, 253, 286, 294, 324, 425
AclWI GGATC 2 cut(s) 149, 470
AcoI YGGCCR 2 cut(s) 223, 372
AcsI RAATTY 1 cut(s) 481
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 2 cut(s) 248, 284
AfiI CCNNNNNNNGG 3 cut(s) 300, 354, 381
AgsI TTSAA 2 cut(s) 208, 457
AjnI CCWGG 3 cut(s) 305, 330, 374
AluBI AGCT 3 cut(s) 115, 190, 519
AluI AGCT 3 cut(s) 115, 190, 519
Alw21I GWGCWC 2 cut(s) 192, 521
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 2 cut(s) 149, 470
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 3 cut(s) 168, 223, 372
ApeKI GCWGC 3 cut(s) 69, 288, 320
ApoI RAATTY 1 cut(s) 481
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspLEI GCGC 2 cut(s) 293, 347
AspS9I GGNCC 2 cut(s) 169, 303
AsuC2I CCSGG 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 303
BalI TGGCCA 1 cut(s) 374
BanII GRGCYC 2 cut(s) 192, 521
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 2 cut(s) 192, 521
BbvI GCAGC 3 cut(s) 56, 300, 307
BccI CCATC 1 cut(s) 500
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 3 cut(s) 307, 332, 376
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 2 cut(s) 127, 498
BfoI RGCGCY 1 cut(s) 294
BglII AGATCT 1 cut(s) 443
BisI GCNGC 7 cut(s) 70, 241, 254, 289, 294, 321, 324
BlsI GCNGC 7 cut(s) 71, 242, 255, 290, 295, 322, 325
Bme1390I CCNGG 4 cut(s) 266, 307, 332, 376
Bme18I GGWCC 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 169, 303
BmrFI CCNGG 4 cut(s) 266, 307, 332, 376
BpiI GAAGAC 1 cut(s) 38
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BpuMI CCSGG 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 354, 381
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 64
BseBI CCWGG 3 cut(s) 307, 332, 376
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 3 cut(s) 300, 354, 381
BseMI GCAATG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 2 cut(s) 140, 397
BseXI GCAGC 3 cut(s) 56, 300, 307
BseYI CCCAGC 1 cut(s) 354
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 3 cut(s) 170, 225, 374
BsiHKAI GWGCWC 2 cut(s) 192, 521
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 3 cut(s) 300, 354, 381
BsmAI GTCTC 1 cut(s) 340
BsnI GGCC 3 cut(s) 170, 225, 374
Bso31I GGTCTC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 192, 521
Bsp143I GATC 3 cut(s) 141, 443, 475
BspACI CCGC 8 cut(s) 139, 172, 241, 253, 286, 294, 324, 425
BspANI GGCC 3 cut(s) 170, 225, 374
BspFNI CGCG 1 cut(s) 174
BspPI GGATC 2 cut(s) 149, 470
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 1 cut(s) 244
BssMI GATC 3 cut(s) 141, 443, 475
Bst2UI CCWGG 3 cut(s) 307, 332, 376
BstAPI GCANNNNNTGC 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 172, 372, 521
BstF5I GGATG 1 cut(s) 511
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 2 cut(s) 293, 347
BstKTI GATC 3 cut(s) 144, 446, 478
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 3 cut(s) 141, 443, 475
BstMWI GCNNNNNNNGC 6 cut(s) 69, 162, 171, 201, 237, 351
BstNI CCWGG 3 cut(s) 307, 332, 376
BstSCI CCNGG 4 cut(s) 264, 305, 330, 374
BstSFI CTRYAG 2 cut(s) 127, 498
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 56, 300, 307
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BsuRI GGCC 3 cut(s) 170, 225, 374
BtsCI GGATG 1 cut(s) 511
BtsI GCAGTG 2 cut(s) 22, 226
BtsIMutI CAGTG 2 cut(s) 22, 226
Cac8I GCNNGC 3 cut(s) 172, 372, 521
CfoI GCGC 2 cut(s) 293, 347
Cfr13I GGNCC 2 cut(s) 169, 303
CseI GACGC 1 cut(s) 163
CsiI ACCWGGT 1 cut(s) 330
Csp6I GTAC 2 cut(s) 247, 283
CspCI CAANNNNNGTGG 2 cut(s) 251, 286
CviJI RGCY 6 cut(s) 115, 170, 190, 225, 374, 519
CviKI_1 RGCY 6 cut(s) 115, 170, 190, 225, 374, 519
CviQI GTAC 2 cut(s) 247, 283
DpnI GATC 3 cut(s) 143, 445, 477
DpnII GATC 3 cut(s) 141, 443, 475
DrdI GACNNNNNNGTC 1 cut(s) 493
DseDI GACNNNNNNGTC 1 cut(s) 493
EaeI YGGCCR 2 cut(s) 223, 372
EciI GGCGGA 2 cut(s) 154, 440
Ecl136II GAGCTC 2 cut(s) 190, 519
Eco24I GRGCYC 2 cut(s) 192, 521
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 303
Eco53kI GAGCTC 2 cut(s) 190, 519
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 36
EcoICRI GAGCTC 2 cut(s) 190, 519
EcoRII CCWGG 3 cut(s) 305, 330, 374
EcoT38I GRGCYC 2 cut(s) 192, 521
FaiI YATR 1 cut(s) 462
FauI CCCGC 1 cut(s) 179
FblI GTMKAC 3 cut(s) 84, 497, 531
Fnu4HI GCNGC 7 cut(s) 70, 241, 254, 289, 294, 321, 324
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 2 cut(s) 192, 521
Fsp4HI GCNGC 7 cut(s) 70, 241, 254, 289, 294, 321, 324
FspBI CTAG 1 cut(s) 447
GlaI GCGC 2 cut(s) 292, 346
GluI GCNGC 7 cut(s) 70, 241, 254, 289, 294, 321, 324
GsaI CCCAGC 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 3 cut(s) 170, 225, 374
HapII CCGG 1 cut(s) 265
HgaI GACGC 1 cut(s) 163
HhaI GCGC 2 cut(s) 293, 347
Hin6I GCGC 2 cut(s) 291, 345
HinP1I GCGC 2 cut(s) 291, 345
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 5 cut(s) 34, 121, 212, 258, 275
HpaII CCGG 1 cut(s) 265
Hpy166II GTNNAC 4 cut(s) 85, 262, 498, 532
Hpy188I TCNGA 3 cut(s) 120, 280, 364
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 4 cut(s) 85, 262, 498, 532
Hpy99I CGWCG 3 cut(s) 10, 13, 220
HpyCH4IV ACGT 2 cut(s) 528, 534
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 162, 171, 201, 237, 351
HpySE526I ACGT 2 cut(s) 528, 534
HspAI GCGC 2 cut(s) 291, 345
Kzo9I GATC 3 cut(s) 141, 443, 475
LmnI GCTCC 2 cut(s) 200, 516
Lsp1109I GCAGC 3 cut(s) 56, 300, 307
MabI ACCWGGT 1 cut(s) 330
MaeI CTAG 1 cut(s) 447
MaeII ACGT 2 cut(s) 528, 534
MalI GATC 3 cut(s) 143, 445, 477
MboI GATC 3 cut(s) 141, 443, 475
MboII GAAGA 4 cut(s) 34, 37, 40, 43
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 2 cut(s) 192, 521
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 3 cut(s) 457, 481, 490
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 3 cut(s) 28, 206, 267
MmeI TCCRAC 2 cut(s) 342, 517
MnlI CCTC 9 cut(s) 86, 98, 109, 158, 161, 375, 459, 496, 506
Mox20I TGGCCA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 374
Msp20I TGGCCA 1 cut(s) 374
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 4 cut(s) 266, 307, 332, 376
MvaI CCWGG 3 cut(s) 307, 332, 376
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 6 cut(s) 69, 162, 171, 201, 237, 351
NciI CCSGG 1 cut(s) 266
NdeII GATC 3 cut(s) 141, 443, 475
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PfeI GAWTC 2 cut(s) 121, 275
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 7 cut(s) 71, 242, 255, 290, 295, 322, 325
PleI GAGTC 3 cut(s) 28, 206, 266
PpsI GAGTC 3 cut(s) 28, 206, 266
Psp124BI GAGCTC 2 cut(s) 192, 521
Psp6I CCWGG 3 cut(s) 305, 330, 374
PspFI CCCAGC 1 cut(s) 354
PspGI CCWGG 3 cut(s) 305, 330, 374
PspPI GGNCC 2 cut(s) 169, 303
PsuI RGATCY 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 2 cut(s) 248, 284
RsaNI GTAC 2 cut(s) 247, 283
SacI GAGCTC 2 cut(s) 192, 521
SalI GTCGAC 1 cut(s) 83
SatI GCNGC 7 cut(s) 70, 241, 254, 289, 294, 321, 324
Sau3AI GATC 3 cut(s) 141, 443, 475
Sau96I GGNCC 2 cut(s) 169, 303
SchI GAGTC 3 cut(s) 28, 206, 267
ScrFI CCNGG 4 cut(s) 266, 307, 332, 376
SduI GDGCHC 2 cut(s) 192, 521
SexAI ACCWGGT 1 cut(s) 330
SfcI CTRYAG 2 cut(s) 127, 498
SinI GGWCC 1 cut(s) 303
Sse9I AATT 3 cut(s) 457, 481, 490
SsiI CCGC 8 cut(s) 139, 172, 241, 253, 286, 294, 324, 425
SspMI CTAG 1 cut(s) 447
SstI GAGCTC 2 cut(s) 192, 521
StyD4I CCNGG 4 cut(s) 264, 305, 330, 374
TaiI ACGT 2 cut(s) 531, 537
TaqI TCGA 2 cut(s) 84, 485
TasI AATT 3 cut(s) 457, 481, 490
TatI WGTACW 1 cut(s) 246
TauI GCSGC 4 cut(s) 243, 256, 296, 326
TfiI GAWTC 2 cut(s) 121, 275
TscAI CASTG 2 cut(s) 22, 233
TseI GCWGC 3 cut(s) 69, 288, 320
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 2 cut(s) 22, 233
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 303
XapI RAATTY 1 cut(s) 481
XmiI GTMKAC 3 cut(s) 84, 497, 531
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.