RLG00000008236

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002273
Physical Location & Seq
Reverse (-)
27558419 .. 27560907
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008236

Sequence Viewer

Length: 909 bp
ATGGAGTCCTTCTTCAAAGAGAAAGAGGCACCATTTCTTAACTCACGCCCACAAAGATCACTCCACTTGGATCTCCTCCCACTTTTCTTACCCGATTCACTCTACCCATCTCACCAAAACCCTCCTTCAACACTACCCCACAAGCTTGATGAATCTTTGTTTATAGGCATTAAAGCTGGGCAATCTGAAGCTATTGATGACCTAGATAGAGCCTTCACTGGTACGACTTTCGATGCCAATCACTGTCCTGGTATCTATCTTTCATGCCGAGACGACGTGGTGTTGGTGTATCAATTAAATACATGGAGCCCTAAATTGGTCGTCTTCCCCAAAATTTCCAAAGCAAAAGGGGCTTCTTCAATTTCAATGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAGAGTCGACCTCGCCAAATCCTCCAAGAACAACAAGCTTCAGATACTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCCACCGAGCTCTGCTCCTACTGCTTCAACGACTCGTCGTTCGACCACTGCTTCTCTTGCCGCCAGTACAAGCGGCGAGTCCACCGGGATTGCGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCGGGTCGTTGTCTGCTGCCGCCGACCAGGTCTCTGTCTGCGCCGATTACTGGGTGTCGGAGTCGCTGGCCAGGTGGAGGAGAAGTAGAAACATCAGTAGTAGTGGTAGAAAGAATAGGGCGGATTTGGGATTGGGGAGATCTAGGGTTTTGAATTATGAGAGGAAATGTGATCCAAATTCGACTGATTCGTCTACAGAGGATGGGAGAGGGAGCTCGCCGAACGTCTACGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

34.1

Weight (kDa)

8.7

Isoelectric Point (pI)

59.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 859
AccB1I GGYRCC 1 cut(s) 28
AccI GTMKAC 3 cut(s) 450, 863, 897
AccII CGCG 1 cut(s) 540
AciI CCGC 8 cut(s) 505, 538, 607, 619, 652, 660, 690, 791
AclWI GGATC 3 cut(s) 78, 515, 836
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 2 cut(s) 333, 847
AcuI CTGAAG 2 cut(s) 207, 467
AfaI GTAC 3 cut(s) 223, 614, 650
AfiI CCNNNNNNNGG 4 cut(s) 316, 666, 720, 747
AgsI TTSAA 6 cut(s) 16, 129, 360, 366, 574, 823
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 3 cut(s) 247, 696, 740
AluBI AGCT 6 cut(s) 145, 176, 191, 481, 556, 885
AluI AGCT 6 cut(s) 145, 176, 191, 481, 556, 885
Alw21I GWGCWC 2 cut(s) 558, 887
Alw26I GTCTC 2 cut(s) 264, 706
AlwI GGATC 3 cut(s) 78, 515, 836
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 2 cut(s) 534, 738
ApeKI GCWGC 3 cut(s) 435, 654, 686
ApoI RAATTY 2 cut(s) 333, 847
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AspLEI GCGC 2 cut(s) 659, 713
AspS9I GGNCC 2 cut(s) 535, 669
AsuC2I CCSGG 2 cut(s) 632, 673
AsuHPI GGTGA 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 669
BalI TGGCCA 1 cut(s) 740
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 3 cut(s) 311, 558, 887
BbsI GAAGAC 2 cut(s) 316, 404
Bbv12I GWGCWC 2 cut(s) 558, 887
BbvI GCAGC 3 cut(s) 422, 666, 673
BccI CCATC 2 cut(s) 115, 866
BceAI ACGGC 1 cut(s) 647
BciT130I CCWGG 3 cut(s) 249, 698, 742
BcnI CCSGG 2 cut(s) 632, 673
BcoDI GTCTC 2 cut(s) 264, 706
BfaI CTAG 2 cut(s) 203, 813
BfmI CTRYAG 2 cut(s) 493, 864
BfoI RGCGCY 1 cut(s) 660
BglII AGATCT 1 cut(s) 809
BisI GCNGC 7 cut(s) 436, 607, 620, 655, 660, 687, 690
BlsI GCNGC 7 cut(s) 437, 608, 621, 656, 661, 688, 691
Bme1390I CCNGG 5 cut(s) 249, 632, 673, 698, 742
Bme18I GGWCC 1 cut(s) 669
BmeT110I CYCGRG 1 cut(s) 402
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 535, 669
BmiI GGNNCC 2 cut(s) 30, 308
BmrFI CCNGG 5 cut(s) 249, 632, 673, 698, 742
BmrI ACTGGG 1 cut(s) 730
BmsI GCATC 1 cut(s) 223
BmuI ACTGGG 1 cut(s) 730
BpiI GAAGAC 2 cut(s) 316, 404
BplI GAGNNNNNCTC 4 cut(s) 438, 470, 545, 577
BpuMI CCSGG 2 cut(s) 632, 673
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 706
BsaXI ACNNNNNCTCC 2 cut(s) 739, 769
Bsc4I CCNNNNNNNGG 4 cut(s) 316, 666, 720, 747
Bse1I ACTGG 3 cut(s) 223, 610, 725
Bse3DI GCAATG 1 cut(s) 430
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 3 cut(s) 249, 698, 742
BseGI GGATG 1 cut(s) 877
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 4 cut(s) 316, 666, 720, 747
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 457
BseNI ACTGG 3 cut(s) 223, 610, 725
BseRI GAGGAG 3 cut(s) 65, 506, 763
BseXI GCAGC 3 cut(s) 422, 666, 673
BseYI CCCAGC 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 540
BshFI GGCC 2 cut(s) 536, 740
BshNI GGYRCC 1 cut(s) 28
BsiHKAI GWGCWC 2 cut(s) 558, 887
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 2 cut(s) 631, 672
BslI CCNNNNNNNGG 4 cut(s) 316, 666, 720, 747
BsmAI GTCTC 2 cut(s) 264, 706
BsmBI CGTCTC 1 cut(s) 264
BsnI GGCC 2 cut(s) 536, 740
Bso31I GGTCTC 1 cut(s) 706
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 3 cut(s) 311, 558, 887
Bsp143I GATC 5 cut(s) 56, 70, 507, 809, 841
BspACI CCGC 8 cut(s) 505, 538, 607, 619, 652, 660, 690, 791
BspANI GGCC 2 cut(s) 536, 740
BspCNI CTCAG 1 cut(s) 456
BspFNI CGCG 1 cut(s) 540
BspLI GGNNCC 2 cut(s) 30, 308
BspPI GGATC 3 cut(s) 78, 515, 836
BspT107I GGYRCC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 706
BsrDI GCAATG 1 cut(s) 430
BsrI ACTGG 3 cut(s) 223, 610, 725
BssMI GATC 5 cut(s) 56, 70, 507, 809, 841
Bst2UI CCWGG 3 cut(s) 249, 698, 742
Bst4CI ACNGT 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 528
BstC8I GCNNGC 3 cut(s) 538, 738, 887
BstDEI CTNAG 1 cut(s) 443
BstF5I GGATG 1 cut(s) 877
BstFNI CGCG 1 cut(s) 540
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 2 cut(s) 659, 713
BstKTI GATC 5 cut(s) 59, 73, 510, 812, 844
BstMAI GTCTC 2 cut(s) 264, 706
BstMBI GATC 5 cut(s) 56, 70, 507, 809, 841
BstMWI GCNNNNNNNGC 6 cut(s) 350, 435, 528, 537, 567, 603
BstNI CCWGG 3 cut(s) 249, 698, 742
BstSCI CCNGG 5 cut(s) 247, 630, 671, 696, 740
BstSFI CTRYAG 2 cut(s) 493, 864
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 3 cut(s) 422, 666, 673
BstV2I GAAGAC 2 cut(s) 316, 404
BstX2I RGATCY 2 cut(s) 70, 809
BstYI RGATCY 2 cut(s) 70, 809
BsuRI GGCC 2 cut(s) 536, 740
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 877
BtsI GCAGTG 2 cut(s) 388, 592
BtsIMutI CAGTG 4 cut(s) 216, 241, 388, 592
Cac8I GCNNGC 3 cut(s) 538, 738, 887
CfoI GCGC 2 cut(s) 659, 713
Cfr13I GGNCC 2 cut(s) 535, 669
CseI GACGC 1 cut(s) 529
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 3 cut(s) 222, 613, 649
CspCI CAANNNNNGTGG 2 cut(s) 617, 652
CviAII CATG 2 cut(s) 264, 303
CviQI GTAC 3 cut(s) 222, 613, 649
DdeI CTNAG 1 cut(s) 443
DpnI GATC 5 cut(s) 58, 72, 509, 811, 843
DpnII GATC 5 cut(s) 56, 70, 507, 809, 841
DrdI GACNNNNNNGTC 1 cut(s) 859
DseDI GACNNNNNNGTC 1 cut(s) 859
EaeI YGGCCR 1 cut(s) 738
EciI GGCGGA 2 cut(s) 520, 806
Ecl136II GAGCTC 2 cut(s) 556, 885
Eco24I GRGCYC 3 cut(s) 311, 558, 887
Eco31I GGTCTC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 669
Eco53kI GAGCTC 2 cut(s) 556, 885
Eco57I CTGAAG 2 cut(s) 207, 467
Eco88I CYCGRG 1 cut(s) 402
EcoICRI GAGCTC 2 cut(s) 556, 885
EcoRII CCWGG 3 cut(s) 247, 696, 740
EcoT38I GRGCYC 3 cut(s) 311, 558, 887
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 2 cut(s) 267, 306
FaiI YATR 4 cut(s) 164, 265, 304, 828
FatI CATG 2 cut(s) 263, 302
FauI CCCGC 1 cut(s) 545
FblI GTMKAC 3 cut(s) 450, 863, 897
Fnu4HI GCNGC 7 cut(s) 436, 607, 620, 655, 660, 687, 690
FokI GGATG 1 cut(s) 884
FriOI GRGCYC 3 cut(s) 311, 558, 887
Fsp4HI GCNGC 7 cut(s) 436, 607, 620, 655, 660, 687, 690
FspBI CTAG 2 cut(s) 203, 813
GlaI GCGC 2 cut(s) 658, 712
GluI GCNGC 7 cut(s) 436, 607, 620, 655, 660, 687, 690
GsaI CCCAGC 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 2 cut(s) 536, 740
HapII CCGG 2 cut(s) 631, 672
HgaI GACGC 1 cut(s) 529
HhaI GCGC 2 cut(s) 659, 713
Hin1II CATG 2 cut(s) 267, 306
Hin6I GCGC 2 cut(s) 657, 711
HinP1I GCGC 2 cut(s) 657, 711
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HindIII AAGCTT 2 cut(s) 143, 479
HpaII CCGG 2 cut(s) 631, 672
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 4 cut(s) 451, 628, 864, 898
Hpy188I TCNGA 5 cut(s) 187, 446, 486, 646, 730
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 4 cut(s) 451, 628, 864, 898
Hpy99I CGWCG 5 cut(s) 278, 376, 379, 545, 586
HpyAV CCTTC 3 cut(s) 19, 135, 223
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 3 cut(s) 276, 894, 900
HpyCH4V TGCA 1 cut(s) 522
HpyF10VI GCNNNNNNNGC 6 cut(s) 350, 435, 528, 537, 567, 603
HpyF3I CTNAG 1 cut(s) 443
HpySE526I ACGT 3 cut(s) 276, 894, 900
Hsp92II CATG 2 cut(s) 267, 306
HspAI GCGC 2 cut(s) 657, 711
Kzo9I GATC 5 cut(s) 56, 70, 507, 809, 841
LmnI GCTCC 3 cut(s) 306, 566, 882
Lsp1109I GCAGC 3 cut(s) 422, 666, 673
LweI GCATC 1 cut(s) 223
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 2 cut(s) 203, 813
MaeII ACGT 3 cut(s) 276, 894, 900
MalI GATC 5 cut(s) 58, 72, 509, 811, 843
MboI GATC 5 cut(s) 56, 70, 507, 809, 841
MboII GAAGA 7 cut(s) 4, 316, 348, 400, 403, 406, 409
MflI RGATCY 2 cut(s) 70, 809
MhlI GDGCHC 3 cut(s) 311, 558, 887
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 6 cut(s) 293, 314, 333, 360, 823, 847
MluNI TGGCCA 1 cut(s) 740
MlyI GAGTC 6 cut(s) 14, 394, 456, 572, 633, 740
MmeI TCCRAC 2 cut(s) 708, 883
Mox20I TGGCCA 1 cut(s) 740
MscI TGGCCA 1 cut(s) 740
MseI TTAA 3 cut(s) 39, 171, 296
Msp20I TGGCCA 1 cut(s) 740
MspI CCGG 2 cut(s) 631, 672
MspR9I CCNGG 5 cut(s) 249, 632, 673, 698, 742
MvaI CCWGG 3 cut(s) 249, 698, 742
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 6 cut(s) 350, 435, 528, 537, 567, 603
NciI CCSGG 2 cut(s) 632, 673
NdeII GATC 5 cut(s) 56, 70, 507, 809, 841
NlaIII CATG 2 cut(s) 267, 306
NlaIV GGNNCC 2 cut(s) 30, 308
NmeAIII GCCGAG 1 cut(s) 293
PcsI WCGNNNNNNNCGW 2 cut(s) 549, 857
PfeI GAWTC 5 cut(s) 95, 152, 545, 641, 857
PflFI GACNNNGTC 1 cut(s) 698
PkrI GCNGC 7 cut(s) 437, 608, 621, 656, 661, 688, 691
PleI GAGTC 6 cut(s) 13, 394, 455, 572, 632, 739
PpsI GAGTC 6 cut(s) 13, 394, 455, 572, 632, 739
Psp124BI GAGCTC 2 cut(s) 558, 887
Psp6I CCWGG 3 cut(s) 247, 696, 740
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 3 cut(s) 247, 696, 740
PspN4I GGNNCC 2 cut(s) 30, 308
PspPI GGNCC 2 cut(s) 535, 669
PsuI RGATCY 2 cut(s) 70, 809
PsyI GACNNNGTC 1 cut(s) 698
RsaI GTAC 3 cut(s) 223, 614, 650
RsaNI GTAC 3 cut(s) 222, 613, 649
SacI GAGCTC 2 cut(s) 558, 887
SalI GTCGAC 1 cut(s) 449
SaqAI TTAA 3 cut(s) 39, 171, 296
SatI GCNGC 7 cut(s) 436, 607, 620, 655, 660, 687, 690
Sau3AI GATC 5 cut(s) 56, 70, 507, 809, 841
Sau96I GGNCC 2 cut(s) 535, 669
SchI GAGTC 6 cut(s) 14, 394, 456, 572, 633, 740
ScrFI CCNGG 5 cut(s) 249, 632, 673, 698, 742
SduI GDGCHC 3 cut(s) 311, 558, 887
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 2 cut(s) 493, 864
SinI GGWCC 1 cut(s) 669
Sse9I AATT 6 cut(s) 293, 314, 333, 360, 823, 847
SsiI CCGC 8 cut(s) 505, 538, 607, 619, 652, 660, 690, 791
SspMI CTAG 2 cut(s) 203, 813
SstI GAGCTC 2 cut(s) 558, 887
StyD4I CCNGG 5 cut(s) 247, 630, 671, 696, 740
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 3 cut(s) 279, 897, 903
TaqI TCGA 5 cut(s) 231, 450, 543, 588, 851
TasI AATT 6 cut(s) 293, 314, 333, 360, 823, 847
TatI WGTACW 1 cut(s) 612
TauI GCSGC 4 cut(s) 609, 622, 662, 692
TfiI GAWTC 5 cut(s) 95, 152, 545, 641, 857
Tru1I TTAA 3 cut(s) 39, 171, 296
Tru9I TTAA 3 cut(s) 39, 171, 296
TscAI CASTG 4 cut(s) 223, 248, 388, 599
TseI GCWGC 3 cut(s) 435, 654, 686
TspDTI ATGAA 2 cut(s) 165, 252
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 4 cut(s) 223, 248, 388, 599
Tth111I GACNNNGTC 1 cut(s) 698
VpaK11BI GGWCC 1 cut(s) 669
XapI RAATTY 2 cut(s) 333, 847
XmiI GTMKAC 3 cut(s) 450, 863, 897
XspI CTAG 2 cut(s) 203, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.