Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Forward (+)

42713130 .. 42715985

Gene Structure 2856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034435

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAACATGAAGCTTCAGCGTGGTGGAATCAGAGCGAAGAATGGGAGCTTCGTCTTGTTCTTCAACCATTTTCTCAAGCTCCACGACGGAAAGGGTGTCGAAATCGGGCTCGCCGGGAGCCCTAAATTGGTCGTCTTCCCCAAAATTTCCAAAGCAAAAGGGGCTTCTTCAATTTCAATGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCAAGAGTTGCCGAACCTGACGAAGTGCCATTGCTGCCACCTCAGAGTCGACCTCGCCAAATCCTCCAAGAACAACAAGCTTCAGATACTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCCACCGAGCTCTGCTCCTACTGCTTCAACGACTCGTCGTTCGACCACTGCTTCTCTTGCCGCCAGTACAAGCGGCGAGTCCACCGGGATTGCGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCGGGTCGTTGTCTGCTGCCGCCGACCAGGTCTCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.4

Weight (kDa)

9.51

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	1 cut(s)	351
AciI	CCGC	7 cut(s)	316, 349, 418, 430, 463, 471, 501
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	2 cut(s)	425, 461
AfiI	CCNNNNNNNGG	2 cut(s)	127, 477
AgsI	TTSAA	4 cut(s)	64, 171, 177, 385
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	5 cut(s)	13, 48, 79, 292, 367
AluI	AGCT	5 cut(s)	13, 48, 79, 292, 367
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	3 cut(s)	246, 465, 497
ApoI	RAATTY	1 cut(s)	144
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	2 cut(s)	346, 480
AsuC2I	CCSGG	3 cut(s)	115, 443, 484
AvaII	GGWCC	1 cut(s)	480
BanII	GRGCYC	3 cut(s)	111, 122, 369
BbsI	GAAGAC	2 cut(s)	127, 215
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	233, 477, 484
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	509
BcnI	CCSGG	3 cut(s)	115, 443, 484
BcoDI	GTCTC	1 cut(s)	517
BfmI	CTRYAG	1 cut(s)	304
BfoI	RGCGCY	1 cut(s)	471
BisI	GCNGC	7 cut(s)	247, 418, 431, 466, 471, 498, 501
BlsI	GCNGC	7 cut(s)	248, 419, 432, 467, 472, 499, 502
Bme1390I	CCNGG	4 cut(s)	115, 443, 484, 509
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	2 cut(s)	346, 480
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	4 cut(s)	115, 443, 484, 509
BpiI	GAAGAC	2 cut(s)	127, 215
BplI	GAGNNNNNCTC	4 cut(s)	249, 281, 356, 388
BpuEI	CTTGAG	2 cut(s)	59, 198
BpuMI	CCSGG	3 cut(s)	115, 443, 484
BsaI	GGTCTC	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 477
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	509
BseLI	CCNNNNNNNGG	2 cut(s)	127, 477
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	233, 477, 484
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	3 cut(s)	114, 442, 483
BslI	CCNNNNNNNGG	2 cut(s)	127, 477
BsmAI	GTCTC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	347
Bso31I	GGTCTC	1 cut(s)	517
Bsp1286I	GDGCHC	3 cut(s)	111, 122, 369
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	7 cut(s)	316, 349, 418, 430, 463, 471, 501
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	421
BssMI	GATC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	509
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	111, 349
BstDEI	CTNAG	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 246, 339, 348, 378, 414
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	4 cut(s)	113, 441, 482, 507
BstSFI	CTRYAG	1 cut(s)	304
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	3 cut(s)	233, 477, 484
BstV2I	GAAGAC	2 cut(s)	127, 215
BsuRI	GGCC	1 cut(s)	347
BtsI	GCAGTG	2 cut(s)	199, 403
BtsIMutI	CAGTG	2 cut(s)	199, 403
Cac8I	GCNNGC	2 cut(s)	111, 349
CfoI	GCGC	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	346, 480
CseI	GACGC	1 cut(s)	340
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	424, 460
CspCI	CAANNNNNGTGG	2 cut(s)	428, 463
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	9 cut(s)	13, 48, 79, 109, 120, 164, 292, 347, 367
CviKI_1	RGCY	9 cut(s)	13, 48, 79, 109, 120, 164, 292, 347, 367
CviQI	GTAC	2 cut(s)	424, 460
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EciI	GGCGGA	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	3 cut(s)	111, 122, 369
Eco31I	GGTCTC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	480
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	507
EcoT38I	GRGCYC	3 cut(s)	111, 122, 369
FaeI	CATG	1 cut(s)	10
FaiI	YATR	1 cut(s)	8
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	356
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	7 cut(s)	247, 418, 431, 466, 471, 498, 501
FriOI	GRGCYC	3 cut(s)	111, 122, 369
Fsp4HI	GCNGC	7 cut(s)	247, 418, 431, 466, 471, 498, 501
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	7 cut(s)	247, 418, 431, 466, 471, 498, 501
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	3 cut(s)	114, 442, 483
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	2 cut(s)	11, 290
HinfI	GANTC	7 cut(s)	27, 211, 258, 356, 389, 435, 452
HpaII	CCGG	3 cut(s)	114, 442, 483
Hpy166II	GTNNAC	2 cut(s)	262, 439
Hpy188I	TCNGA	4 cut(s)	32, 257, 297, 457
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	262, 439
Hpy99I	CGWCG	5 cut(s)	89, 187, 190, 356, 397
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 246, 339, 348, 378, 414
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	1 cut(s)	468
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	4 cut(s)	45, 84, 117, 377
LpnPI	CCDG	7 cut(s)	127, 242, 434, 455, 463, 494, 496
Lsp1109I	GCAGC	3 cut(s)	233, 477, 484
MabI	ACCWGGT	1 cut(s)	507
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	8 cut(s)	49, 52, 127, 159, 211, 214, 217, 220
MhlI	GDGCHC	3 cut(s)	111, 122, 369
MluCI	AATT	3 cut(s)	125, 144, 171
MlyI	GAGTC	4 cut(s)	205, 267, 383, 444
MnlI	CCTC	5 cut(s)	263, 275, 286, 335, 338
MspI	CCGG	3 cut(s)	114, 442, 483
MspR9I	CCNGG	4 cut(s)	115, 443, 484, 509
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	6 cut(s)	161, 246, 339, 348, 378, 414
NciI	CCSGG	3 cut(s)	115, 443, 484
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	27, 356, 452
PflFI	GACNNNGTC	1 cut(s)	509
PkrI	GCNGC	7 cut(s)	248, 419, 432, 467, 472, 499, 502
PleI	GAGTC	4 cut(s)	205, 266, 383, 443
PpsI	GAGTC	4 cut(s)	205, 266, 383, 443
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	2 cut(s)	346, 480
PsyI	GACNNNGTC	1 cut(s)	509
RsaI	GTAC	2 cut(s)	425, 461
RsaNI	GTAC	2 cut(s)	424, 460
SacI	GAGCTC	1 cut(s)	369
SalI	GTCGAC	1 cut(s)	260
SatI	GCNGC	7 cut(s)	247, 418, 431, 466, 471, 498, 501
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	2 cut(s)	346, 480
SchI	GAGTC	4 cut(s)	205, 267, 383, 444
ScrFI	CCNGG	4 cut(s)	115, 443, 484, 509
SduI	GDGCHC	3 cut(s)	111, 122, 369
SetI	ASST	9 cut(s)	15, 50, 81, 231, 255, 267, 294, 369, 513
SexAI	ACCWGGT	1 cut(s)	507
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	74, 213
SmoI	CTYRAG	2 cut(s)	74, 213
Sse9I	AATT	3 cut(s)	125, 144, 171
SsiI	CCGC	7 cut(s)	316, 349, 418, 430, 463, 471, 501
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	4 cut(s)	113, 441, 482, 507
TaqI	TCGA	4 cut(s)	99, 261, 354, 399
TasI	AATT	3 cut(s)	125, 144, 171
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	4 cut(s)	420, 433, 473, 503
TfiI	GAWTC	3 cut(s)	27, 356, 452
TscAI	CASTG	2 cut(s)	199, 410
TseI	GCWGC	3 cut(s)	246, 465, 497
TspDTI	ATGAA	2 cut(s)	17, 23
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	199, 410
Tth111I	GACNNNGTC	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	480
XapI	RAATTY	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.