Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Reverse (-)

9594389 .. 9597126

Gene Structure 2738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G056800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGATTCAAATGAAGAGCAATGAAGAAGCCCAAGCACAAGCAGCGAAGAAAACGAGAGAGTTGCCCAATCTCTCGGAATGCCATTCGTGCCACCTGAGAGTCGACATTGCCAACGCCAATGCCAAGAGCAAGCTTCACGTCCTGTACAGCGAGTGGCGCATTGTCCTTCTCTGCAAGAAATGCTTCTCTCGCGTCGAGTCCTCGGAGCTCTGCTCCTATTGCTACTCCACTTCGTCGTCCCAAGAATCTTTCTTTTGCCTCCAGTGTCACCGGAAAGTCCACAGGCATTGCGATTCCGAGTACCGGAGCGTTGCGCTCTTGTCCGATTCTTGTTCGGCCATGGAGTTTTCCGTCTGCGCCGATTGCTGGATTCCGGAGTCGCTGGTCAAGTGGAAAAGGGTTGTGAGCAGTAGCAAGTCTCGAAGGACTGGAAAGAGAAGAGTTGGTTTGGGATTGGGGAAATCTAGGGTTTTGGCCATGGTGGATGACAGGGAAATTGATGATGCCTTTGGTAGCGAAGAGGGCTCAAACAGGAGGGATGAGGATGCTGCTGTTGATGTTGATGATGGGCAGTTGGATGCCATGGACGGCTCTGCTGAGAAGTTGTGTTCGCCGAATTTGAGTGTGTGCTTTTGTGATTCATCAACGGACATTGGGTGTTTGAAGCTGGAACCAAGAGCGCTTGATATTGAAGAAGAGAGTGGGGATGATGATGATGATGATGAGCCGTTGAAGGAAGGAGATTGGAGCTGCTCCAATGGTGATGACTTGGAGTCTCCAGCTTTCTGTAAACAAGAGCAAGAGGAAAGTGTTTGTATTACCACGCCAAAGAAGCAAAGGTGCAATGCAAAGCTTGATCCTTTTTATTTCAAGTATAGGAAAAGGAGCACTCTTGATCGCTATGTATTAACGTACAAGAGGAGAAGTCCCAAAAACCTCAACGCTTCTTCTATGGTAACATATAAGAGAAGGAAACCTAAATGCCTCTATGCTTGTTATACGTTTACATATAAGAGGAGGAGACCCAGAATTCTGTATGCTCGTTCAACTGGTTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

40.19

Weight (kDa)

7.95

Isoelectric Point (pI)

71.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	192
AccIII	TCCGGA	1 cut(s)	373
AclWI	GGATC	1 cut(s)	851
AcoI	YGGCCR	2 cut(s)	336, 474
AcsI	RAATTY	2 cut(s)	616, 1029
AfaI	GTAC	3 cut(s)	146, 302, 914
AfeI	AGCGCT	1 cut(s)	681
AfiI	CCNNNNNNNGG	2 cut(s)	303, 366
AgsI	TTSAA	6 cut(s)	8, 664, 692, 733, 871, 1047
AhdI	GACNNNNNGTC	1 cut(s)	772
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	6 cut(s)	133, 208, 667, 750, 782, 853
AluI	AGCT	6 cut(s)	133, 208, 667, 750, 782, 853
Alw21I	GWGCWC	2 cut(s)	210, 890
Alw26I	GTCTC	3 cut(s)	423, 780, 1015
AlwI	GGATC	1 cut(s)	851
Aor13HI	TCCGGA	1 cut(s)	373
Aor51HI	AGCGCT	1 cut(s)	681
AoxI	GGCC	2 cut(s)	336, 474
ApeKI	GCWGC	3 cut(s)	41, 548, 750
ApoI	RAATTY	2 cut(s)	616, 1029
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	4 cut(s)	159, 316, 359, 682
AsuHPI	GGTGA	2 cut(s)	260, 773
BalI	TGGCCA	1 cut(s)	476
BanII	GRGCYC	2 cut(s)	210, 527
Bbv12I	GWGCWC	2 cut(s)	210, 890
BbvI	GCAGC	3 cut(s)	53, 535, 737
BccI	CCATC	1 cut(s)	560
BceAI	ACGGC	2 cut(s)	604, 712
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcoDI	GTCTC	3 cut(s)	423, 780, 1015
BfaI	CTAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	683
BisI	GCNGC	3 cut(s)	42, 549, 751
BlsI	GCNGC	3 cut(s)	43, 550, 752
BmeRI	GACNNNNNGTC	1 cut(s)	772
BmgBI	CACGTC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	672
BmsI	GCATC	3 cut(s)	493, 535, 568
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpmI	CTGGAG	2 cut(s)	245, 762
BsaI	GGTCTC	1 cut(s)	1015
BsaJI	CCNNGG	4 cut(s)	201, 339, 477, 582
BsaWI	WCCGGW	3 cut(s)	270, 303, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 366
Bse1I	ACTGG	3 cut(s)	262, 433, 1054
Bse3DI	GCAATG	4 cut(s)	25, 105, 286, 850
BseAI	TCCGGA	1 cut(s)	373
BseDI	CCNNGG	4 cut(s)	201, 339, 477, 582
BseGI	GGATG	5 cut(s)	490, 544, 550, 583, 712
BseLI	CCNNNNNNNGG	2 cut(s)	303, 366
BseMI	GCAATG	4 cut(s)	25, 105, 286, 850
BseMII	CTCAG	2 cut(s)	86, 588
BseNI	ACTGG	3 cut(s)	262, 433, 1054
BseRI	GAGGAG	3 cut(s)	934, 1030, 1033
BseXI	GCAGC	3 cut(s)	53, 535, 737
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	338, 476
BsiHKAI	GWGCWC	2 cut(s)	210, 890
BsiSI	CCGG	3 cut(s)	271, 304, 374
BslFI	GGGAC	2 cut(s)	223, 912
BslI	CCNNNNNNNGG	2 cut(s)	303, 366
BsmAI	GTCTC	3 cut(s)	423, 780, 1015
BsmFI	GGGAC	2 cut(s)	223, 912
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	338, 476
Bso31I	GGTCTC	1 cut(s)	1015
Bsp1286I	GDGCHC	3 cut(s)	210, 527, 890
Bsp13I	TCCGGA	1 cut(s)	373
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	856, 895
Bsp19I	CCATGG	3 cut(s)	339, 477, 582
BspANI	GGCC	2 cut(s)	338, 476
BspCNI	CTCAG	2 cut(s)	87, 589
BspEI	TCCGGA	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	1058
BspLI	GGNNCC	1 cut(s)	672
BspPI	GGATC	1 cut(s)	851
BspQI	GCTCTTC	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	1015
BsrDI	GCAATG	4 cut(s)	25, 105, 286, 850
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	3 cut(s)	262, 433, 1054
BssECI	CCNNGG	4 cut(s)	201, 339, 477, 582
BssMI	GATC	2 cut(s)	856, 895
BssT1I	CCWWGG	3 cut(s)	339, 477, 582
Bst6I	CTCTTC	4 cut(s)	8, 433, 513, 690
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	95, 597
BstDSI	CCRYGG	3 cut(s)	339, 477, 582
BstF5I	GGATG	5 cut(s)	490, 544, 550, 583, 712
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	4 cut(s)	159, 316, 359, 682
BstKTI	GATC	2 cut(s)	859, 898
BstMAI	GTCTC	3 cut(s)	423, 780, 1015
BstMBI	GATC	2 cut(s)	856, 895
BstMWI	GCNNNNNNNGC	9 cut(s)	41, 87, 156, 180, 189, 219, 363, 522, 832
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	3 cut(s)	53, 535, 737
BsuRI	GGCC	2 cut(s)	338, 476
BtgI	CCRYGG	3 cut(s)	339, 477, 582
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	5 cut(s)	490, 544, 550, 583, 712
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	131
CciI	TCATGA	1 cut(s)	1058
CfoI	GCGC	4 cut(s)	159, 316, 359, 682
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	3 cut(s)	145, 301, 913
CspCI	CAANNNNNGTGG	2 cut(s)	269, 304
CviAII	CATG	4 cut(s)	340, 478, 583, 1059
CviQI	GTAC	3 cut(s)	145, 301, 913
DdeI	CTNAG	2 cut(s)	95, 597
DpnI	GATC	2 cut(s)	858, 897
DpnII	GATC	2 cut(s)	856, 895
DriI	GACNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	2 cut(s)	336, 474
Eam1104I	CTCTTC	4 cut(s)	8, 433, 513, 690
Eam1105I	GACNNNNNGTC	1 cut(s)	772
EarI	CTCTTC	4 cut(s)	8, 433, 513, 690
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	3 cut(s)	339, 477, 582
Eco24I	GRGCYC	2 cut(s)	210, 527
Eco31I	GGTCTC	1 cut(s)	1015
Eco47III	AGCGCT	1 cut(s)	681
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	1029
EcoT14I	CCWWGG	3 cut(s)	339, 477, 582
EcoT38I	GRGCYC	2 cut(s)	210, 527
ErhI	CCWWGG	3 cut(s)	339, 477, 582
FaeI	CATG	4 cut(s)	343, 481, 586, 1062
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	223, 912
FatI	CATG	4 cut(s)	339, 477, 582, 1058
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	42, 549, 751
FokI	GGATG	5 cut(s)	497, 551, 557, 590, 719
FriOI	GRGCYC	2 cut(s)	210, 527
Fsp4HI	GCNGC	3 cut(s)	42, 549, 751
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	4 cut(s)	158, 315, 358, 681
GluI	GCNGC	3 cut(s)	42, 549, 751
GsuI	CTGGAG	2 cut(s)	245, 762
HaeII	RGCGCY	1 cut(s)	683
HaeIII	GGCC	2 cut(s)	338, 476
HapII	CCGG	3 cut(s)	271, 304, 374
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	4 cut(s)	159, 316, 359, 682
Hin1II	CATG	4 cut(s)	343, 481, 586, 1062
Hin6I	GCGC	4 cut(s)	157, 314, 357, 680
HinP1I	GCGC	4 cut(s)	157, 314, 357, 680
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	2 cut(s)	131, 851
HpaII	CCGG	3 cut(s)	271, 304, 374
HphI	GGTGA	2 cut(s)	260, 773
Hpy166II	GTNNAC	4 cut(s)	103, 280, 791, 1005
Hpy188I	TCNGA	4 cut(s)	76, 205, 298, 325
Hpy188III	TCNNGA	4 cut(s)	374, 420, 893, 1059
Hpy8I	GTNNAC	4 cut(s)	103, 280, 791, 1005
Hpy99I	CGWCG	2 cut(s)	197, 238
HpyAV	CCTTC	5 cut(s)	176, 417, 727, 731, 963
HpyCH4IV	ACGT	3 cut(s)	138, 911, 1001
HpyCH4V	TGCA	3 cut(s)	174, 843, 848
HpyF10VI	GCNNNNNNNGC	9 cut(s)	41, 87, 156, 180, 189, 219, 363, 522, 832
HpyF3I	CTNAG	2 cut(s)	95, 597
HpySE526I	ACGT	3 cut(s)	138, 911, 1001
Hsp92II	CATG	4 cut(s)	343, 481, 586, 1062
HspAI	GCGC	4 cut(s)	157, 314, 357, 680
Kpn2I	TCCGGA	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	856, 895
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	6 cut(s)	205, 218, 306, 747, 758, 885
Lsp1109I	GCAGC	3 cut(s)	53, 535, 737
LweI	GCATC	3 cut(s)	493, 535, 568
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	3 cut(s)	138, 911, 1001
MaeIII	GTNAC	2 cut(s)	266, 955
MalI	GATC	2 cut(s)	858, 897
MboI	GATC	2 cut(s)	856, 895
MboII	GAAGA	8 cut(s)	25, 35, 58, 450, 530, 704, 707, 939
MhlI	GDGCHC	3 cut(s)	210, 527, 890
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	3 cut(s)	495, 616, 1029
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	4 cut(s)	108, 206, 386, 782
MmeI	TCCRAC	1 cut(s)	555
Mox20I	TGGCCA	1 cut(s)	476
MroI	TCCGGA	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	1 cut(s)	908
Msp20I	TGGCCA	1 cut(s)	476
MspI	CCGG	3 cut(s)	271, 304, 374
Mva1269I	GAATGC	1 cut(s)	83
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	9 cut(s)	41, 87, 156, 180, 189, 219, 363, 522, 832
NcoI	CCATGG	3 cut(s)	339, 477, 582
NdeII	GATC	2 cut(s)	856, 895
NlaIII	CATG	4 cut(s)	343, 481, 586, 1062
NlaIV	GGNNCC	1 cut(s)	672
NmuCI	GTSAC	1 cut(s)	266
PagI	TCATGA	1 cut(s)	1058
PciSI	GCTCTTC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	6 cut(s)	4, 245, 293, 326, 370, 638
PkrI	GCNGC	3 cut(s)	43, 550, 752
PleI	GAGTC	4 cut(s)	107, 205, 385, 781
PpsI	GAGTC	4 cut(s)	107, 205, 385, 781
Psp124BI	GAGCTC	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	672
RsaI	GTAC	3 cut(s)	146, 302, 914
RsaNI	GTAC	3 cut(s)	145, 301, 913
SacI	GAGCTC	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	908
SatI	GCNGC	3 cut(s)	42, 549, 751
Sau3AI	GATC	2 cut(s)	856, 895
SchI	GAGTC	4 cut(s)	108, 206, 386, 782
SduI	GDGCHC	3 cut(s)	210, 527, 890
SfaNI	GCATC	3 cut(s)	493, 535, 568
Sse9I	AATT	3 cut(s)	495, 616, 1029
SspMI	CTAG	1 cut(s)	465
SstI	GAGCTC	1 cut(s)	210
StyI	CCWWGG	3 cut(s)	339, 477, 582
TaiI	ACGT	3 cut(s)	141, 914, 1004
TaqI	TCGA	3 cut(s)	102, 195, 421
TasI	AATT	3 cut(s)	495, 616, 1029
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	6 cut(s)	4, 245, 293, 326, 370, 638
Tru1I	TTAA	1 cut(s)	908
Tru9I	TTAA	1 cut(s)	908
TscAI	CASTG	1 cut(s)	269
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	3 cut(s)	41, 548, 750
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	4 cut(s)	26, 36, 630, 1044
TspGWI	ACGGA	2 cut(s)	340, 662
TspRI	CASTG	1 cut(s)	269
XapI	RAATTY	2 cut(s)	616, 1029
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.