Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00896

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Forward (+)

2727 .. 4066

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAGAGTCGACCTCGCCAAATCCTCCAAGAACAACAAGCTTCAGATTCTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAAAAAGTGCTTGGCCCGCGTCGAATCCACCGAGCTCTGGTCCTACTGCTTCAACGACTCATCGTTCGGCCACTACTTCTCTTGCCTCCAGTACAAGCGGCGAGTCCACCGGGATTGTGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCGGGTCGTTGTCTGCTGACACCGACCAGGTCTCTGTCTGCGCCGATTGCTGGGTGTTGGAGTCGCTGGCCAGGTGGAGGAGAAGTAGAAACATCAGTAGTAGTGGTAGAAAGAATAGGGTGGATTTGGGATTGGGGAGATCTAGGGTTTTGAATTATGAGAGGAAATGTGATCCAAATTCGACTGATTCGTCTACAGAGGATGGGAGAGGGAGCTCGCCGAACGTCTACCAATTATTGCTTCTCATTACTTCTGTTTTTTTTTTTTTTTTGAGAGCCAATTCGATCTCTAATCCATCTTCCATCTTTACATTCTCAGAGAAACTAAGATCTGTGCACCAAATTCTCAAAGTTTATCTGCTAAGGAATTCAAGCTTCCCGGCTCCAAGGTTAGTCAACAAAATCATATATTTAGATCCATTTTCAGAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

28.29

Weight (kDa)

9.35

Isoelectric Point (pI)

67.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	493
AccI	GTMKAC	3 cut(s)	84, 497, 531
AccII	CGCG	1 cut(s)	174
AciI	CCGC	5 cut(s)	139, 172, 253, 286, 294
AclWI	GGATC	3 cut(s)	149, 470, 713
AcoI	YGGCCR	2 cut(s)	223, 372
AcsI	RAATTY	3 cut(s)	481, 645, 670
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	248, 284
AfiI	CCNNNNNNNGG	4 cut(s)	192, 300, 354, 381
AgsI	TTSAA	3 cut(s)	208, 457, 675
AjnI	CCWGG	2 cut(s)	330, 374
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	4 cut(s)	115, 190, 519, 678
AluI	AGCT	4 cut(s)	115, 190, 519, 678
Alw21I	GWGCWC	3 cut(s)	192, 521, 642
Alw26I	GTCTC	1 cut(s)	340
Alw44I	GTGCAC	1 cut(s)	638
AlwI	GGATC	3 cut(s)	149, 470, 713
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	3 cut(s)	168, 223, 372
ApaLI	GTGCAC	1 cut(s)	638
ApeKI	GCWGC	2 cut(s)	69, 288
ApoI	RAATTY	3 cut(s)	481, 645, 670
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspLEI	GCGC	2 cut(s)	293, 347
AspS9I	GGNCC	3 cut(s)	169, 195, 303
AsuC2I	CCSGG	3 cut(s)	266, 307, 683
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	2 cut(s)	195, 303
BaeGI	GKGCMC	1 cut(s)	642
BalI	TGGCCA	1 cut(s)	374
BanII	GRGCYC	2 cut(s)	192, 521
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	3 cut(s)	192, 521, 642
BbvI	GCAGC	2 cut(s)	56, 300
BccI	CCATC	3 cut(s)	500, 607, 614
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	2 cut(s)	332, 376
BcnI	CCSGG	3 cut(s)	266, 307, 683
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	2 cut(s)	127, 498
BfoI	RGCGCY	1 cut(s)	294
BglII	AGATCT	2 cut(s)	443, 632
BisI	GCNGC	4 cut(s)	70, 254, 289, 294
BlsI	GCNGC	4 cut(s)	71, 255, 290, 295
Bme1390I	CCNGG	5 cut(s)	266, 307, 332, 376, 683
Bme18I	GGWCC	2 cut(s)	195, 303
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	3 cut(s)	169, 195, 303
BmiI	GGNNCC	1 cut(s)	687
BmrFI	CCNGG	5 cut(s)	266, 307, 332, 376, 683
BpiI	GAAGAC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	665
BpuMI	CCSGG	3 cut(s)	266, 307, 683
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	1 cut(s)	689
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 300, 354, 381
Bse1I	ACTGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	2 cut(s)	332, 376
BseDI	CCNNGG	1 cut(s)	689
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	4 cut(s)	192, 300, 354, 381
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	91, 633
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	2 cut(s)	140, 397
BseSI	GKGCMC	1 cut(s)	642
BseXI	GCAGC	2 cut(s)	56, 300
BseYI	CCCAGC	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	170, 225, 374
BsiHKAI	GWGCWC	3 cut(s)	192, 521, 642
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	265, 306, 683
BslI	CCNNNNNNNGG	4 cut(s)	192, 300, 354, 381
BsmAI	GTCTC	1 cut(s)	340
BsnI	GGCC	3 cut(s)	170, 225, 374
Bso31I	GGTCTC	1 cut(s)	340
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	3 cut(s)	192, 521, 642
Bsp143I	GATC	6 cut(s)	141, 443, 475, 588, 632, 718
BspACI	CCGC	5 cut(s)	139, 172, 253, 286, 294
BspANI	GGCC	3 cut(s)	170, 225, 374
BspCNI	CTCAG	2 cut(s)	90, 632
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	687
BspPI	GGATC	3 cut(s)	149, 470, 713
BspTNI	GGTCTC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	689
BssMI	GATC	6 cut(s)	141, 443, 475, 588, 632, 718
BssT1I	CCWWGG	1 cut(s)	689
Bst2UI	CCWGG	2 cut(s)	332, 376
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	172, 372, 521
BstDEI	CTNAG	4 cut(s)	77, 619, 629, 665
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	2 cut(s)	293, 347
BstKTI	GATC	6 cut(s)	144, 446, 478, 591, 635, 721
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	6 cut(s)	141, 443, 475, 588, 632, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 162, 171, 351
BstNI	CCWGG	2 cut(s)	332, 376
BstSCI	CCNGG	5 cut(s)	264, 305, 330, 374, 681
BstSFI	CTRYAG	2 cut(s)	127, 498
BstSLI	GKGCMC	1 cut(s)	642
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	56, 300
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	3 cut(s)	443, 632, 718
BstYI	RGATCY	3 cut(s)	443, 632, 718
BsuRI	GGCC	3 cut(s)	170, 225, 374
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	3 cut(s)	172, 372, 521
CfoI	GCGC	2 cut(s)	293, 347
Cfr13I	GGNCC	3 cut(s)	169, 195, 303
CseI	GACGC	1 cut(s)	163
CsiI	ACCWGGT	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	247, 283
CspCI	CAANNNNNGTGG	2 cut(s)	251, 286
CviJI	RGCY	9 cut(s)	115, 170, 190, 225, 374, 519, 581, 678, 686
CviKI_1	RGCY	9 cut(s)	115, 170, 190, 225, 374, 519, 581, 678, 686
CviQI	GTAC	2 cut(s)	247, 283
DdeI	CTNAG	4 cut(s)	77, 619, 629, 665
DpnI	GATC	6 cut(s)	143, 445, 477, 590, 634, 720
DpnII	GATC	6 cut(s)	141, 443, 475, 588, 632, 718
DrdI	GACNNNNNNGTC	1 cut(s)	493
DseDI	GACNNNNNNGTC	1 cut(s)	493
EaeI	YGGCCR	2 cut(s)	223, 372
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	2 cut(s)	190, 519
Eco130I	CCWWGG	1 cut(s)	689
Eco24I	GRGCYC	2 cut(s)	192, 521
Eco31I	GGTCTC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	195, 303
Eco53kI	GAGCTC	2 cut(s)	190, 519
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	2 cut(s)	190, 519
EcoRI	GAATTC	1 cut(s)	670
EcoRII	CCWGG	2 cut(s)	330, 374
EcoT14I	CCWWGG	1 cut(s)	689
EcoT38I	GRGCYC	2 cut(s)	192, 521
ErhI	CCWWGG	1 cut(s)	689
FaiI	YATR	3 cut(s)	462, 710, 712
FauI	CCCGC	1 cut(s)	179
FblI	GTMKAC	3 cut(s)	84, 497, 531
Fnu4HI	GCNGC	4 cut(s)	70, 254, 289, 294
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	2 cut(s)	192, 521
Fsp4HI	GCNGC	4 cut(s)	70, 254, 289, 294
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	2 cut(s)	292, 346
GluI	GCNGC	4 cut(s)	70, 254, 289, 294
GsaI	CCCAGC	1 cut(s)	358
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	170, 225, 374
HapII	CCGG	3 cut(s)	265, 306, 683
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	2 cut(s)	293, 347
Hin6I	GCGC	2 cut(s)	291, 345
HinP1I	GCGC	2 cut(s)	291, 345
HincII	GTYRAC	2 cut(s)	85, 700
HindII	GTYRAC	2 cut(s)	85, 700
HindIII	AAGCTT	2 cut(s)	113, 676
HinfI	GANTC	9 cut(s)	34, 81, 121, 179, 212, 258, 275, 365, 491
HpaII	CCGG	3 cut(s)	265, 306, 683
Hpy166II	GTNNAC	6 cut(s)	85, 262, 498, 532, 640, 700
Hpy188I	TCNGA	5 cut(s)	80, 120, 280, 622, 730
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	6 cut(s)	85, 262, 498, 532, 640, 700
Hpy99I	CGWCG	2 cut(s)	13, 179
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	2 cut(s)	156, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 162, 171, 351
HpyF3I	CTNAG	4 cut(s)	77, 619, 629, 665
HpySE526I	ACGT	1 cut(s)	528
HspAI	GCGC	2 cut(s)	291, 345
Kzo9I	GATC	6 cut(s)	141, 443, 475, 588, 632, 718
LmnI	GCTCC	2 cut(s)	516, 691
Lsp1109I	GCAGC	2 cut(s)	56, 300
MabI	ACCWGGT	1 cut(s)	330
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	1 cut(s)	528
MalI	GATC	6 cut(s)	143, 445, 477, 590, 634, 720
MboI	GATC	6 cut(s)	141, 443, 475, 588, 632, 718
MboII	GAAGA	5 cut(s)	34, 37, 40, 43, 594
MflI	RGATCY	3 cut(s)	443, 632, 718
MhlI	GDGCHC	3 cut(s)	192, 521, 642
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	6 cut(s)	457, 481, 536, 583, 645, 670
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	5 cut(s)	28, 90, 206, 267, 374
MmeI	TCCRAC	1 cut(s)	342
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	1 cut(s)	736
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	3 cut(s)	265, 306, 683
MspR9I	CCNGG	5 cut(s)	266, 307, 332, 376, 683
MvaI	CCWGG	2 cut(s)	332, 376
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	4 cut(s)	69, 162, 171, 351
NciI	CCSGG	3 cut(s)	266, 307, 683
NdeII	GATC	6 cut(s)	141, 443, 475, 588, 632, 718
NlaIV	GGNNCC	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 491
PfeI	GAWTC	4 cut(s)	121, 179, 275, 491
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	71, 255, 290, 295
PleI	GAGTC	5 cut(s)	28, 89, 206, 266, 373
PpsI	GAGTC	5 cut(s)	28, 89, 206, 266, 373
Psp124BI	GAGCTC	2 cut(s)	192, 521
Psp6I	CCWGG	2 cut(s)	330, 374
PspFI	CCCAGC	1 cut(s)	354
PspGI	CCWGG	2 cut(s)	330, 374
PspN4I	GGNNCC	1 cut(s)	687
PspPI	GGNCC	3 cut(s)	169, 195, 303
PsuI	RGATCY	3 cut(s)	443, 632, 718
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	2 cut(s)	248, 284
RsaNI	GTAC	2 cut(s)	247, 283
SacI	GAGCTC	2 cut(s)	192, 521
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	736
SatI	GCNGC	4 cut(s)	70, 254, 289, 294
Sau3AI	GATC	6 cut(s)	141, 443, 475, 588, 632, 718
Sau96I	GGNCC	3 cut(s)	169, 195, 303
SchI	GAGTC	5 cut(s)	28, 90, 206, 267, 374
ScrFI	CCNGG	5 cut(s)	266, 307, 332, 376, 683
SduI	GDGCHC	3 cut(s)	192, 521, 642
SexAI	ACCWGGT	1 cut(s)	330
SfcI	CTRYAG	2 cut(s)	127, 498
SinI	GGWCC	2 cut(s)	195, 303
Sse9I	AATT	6 cut(s)	457, 481, 536, 583, 645, 670
SsiI	CCGC	5 cut(s)	139, 172, 253, 286, 294
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	2 cut(s)	192, 521
StyD4I	CCNGG	5 cut(s)	264, 305, 330, 374, 681
StyI	CCWWGG	1 cut(s)	689
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	4 cut(s)	84, 177, 485, 587
TasI	AATT	6 cut(s)	457, 481, 536, 583, 645, 670
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	2 cut(s)	256, 296
TfiI	GAWTC	4 cut(s)	121, 179, 275, 491
Tru1I	TTAA	1 cut(s)	736
Tru9I	TTAA	1 cut(s)	736
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	2 cut(s)	69, 288
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	22
Tth111I	GACNNNGTC	1 cut(s)	332
VneI	GTGCAC	1 cut(s)	638
VpaK11BI	GGWCC	2 cut(s)	195, 303
XapI	RAATTY	3 cut(s)	481, 645, 670
XmiI	GTMKAC	3 cut(s)	84, 497, 531
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.