Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024708.1

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1397

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024708.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 688 bp

agggagaagtcatcttccaccttgccggcctccggtgaccagtggtagggcgccggcgaccagtgacctgaatcctgcgaacgggagccctaaattggtcgtcttccccaaaatttccaaagcaaaaggggcttcttcaatttcaatgacgacgatgagcagtgagaagaagaagaagactcgggagttgccgaacctgacggagtgccattgctgccacctcagagtctacctcgccaaatcctccaagaacaacaagcttcagattctctacagcgagtggcggatcgtcctcctctacaacaagtgcttggcccgcgtcgaatccatcgagctctgctcctactgcttcaacgactcgttgttcggccactgcttctcttgccgccagtacaagcggcgagtccacctggattgcgattccgagtaccgcagcgccgccgtctggtcagggtcgttgtctgctgccgccgaccaggtctctgtctgggtcgattgctgggtgtcggagtcgctggccaggtggaggagaagtagaaacatcagtagtagtggtagaaagaatagggcggatttgggattggggagatctagggttttgaattatgagaggaaatgtgatccaaattcgactgattcgtctacagaggatgggagagggagctcgccgaacgtctacgttggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.46

Weight (kDa)

9.52

Isoelectric Point (pI)

69.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	638
AccB1I	GGYRCC	1 cut(s)	50
AccI	GTMKAC	3 cut(s)	229, 642, 676
AccII	CGCG	1 cut(s)	319
AciI	CCGC	8 cut(s)	284, 317, 386, 398, 431, 439, 469, 570
AclWI	GGATC	2 cut(s)	294, 615
AcoI	YGGCCR	2 cut(s)	368, 517
AcsI	RAATTY	2 cut(s)	112, 626
AcuI	CTGAAG	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	393, 429
AfiI	CCNNNNNNNGG	6 cut(s)	32, 46, 81, 95, 445, 526
AgsI	TTSAA	4 cut(s)	139, 145, 353, 602
AjnI	CCWGG	3 cut(s)	409, 475, 519
AluBI	AGCT	3 cut(s)	260, 335, 664
AluI	AGCT	3 cut(s)	260, 335, 664
Alw21I	GWGCWC	2 cut(s)	337, 666
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	294, 615
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	4 cut(s)	27, 313, 368, 517
ApeKI	GCWGC	3 cut(s)	214, 433, 465
ApoI	RAATTY	2 cut(s)	112, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
AspLEI	GCGC	2 cut(s)	53, 438
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	3 cut(s)	90, 337, 666
BbsI	GAAGAC	2 cut(s)	95, 183
Bbv12I	GWGCWC	2 cut(s)	337, 666
BbvI	GCAGC	3 cut(s)	201, 445, 452
BccI	CCATC	2 cut(s)	336, 645
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	3 cut(s)	411, 477, 521
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	1 cut(s)	592
BfmI	CTRYAG	2 cut(s)	272, 643
BfoI	RGCGCY	2 cut(s)	54, 439
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	7 cut(s)	215, 386, 399, 434, 439, 466, 469
BlsI	GCNGC	7 cut(s)	216, 387, 400, 435, 440, 467, 470
Bme1390I	CCNGG	3 cut(s)	411, 477, 521
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	52, 87
BmrFI	CCNGG	3 cut(s)	411, 477, 521
BpiI	GAAGAC	2 cut(s)	95, 183
BplI	GAGNNNNNCTC	4 cut(s)	217, 249, 324, 356
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 46, 81, 95, 445, 526
Bse118I	RCCGGY	2 cut(s)	25, 53
Bse1I	ACTGG	3 cut(s)	40, 61, 389
Bse3DI	GCAATG	1 cut(s)	209
BseBI	CCWGG	3 cut(s)	411, 477, 521
BseGI	GGATG	1 cut(s)	656
BseLI	CCNNNNNNNGG	6 cut(s)	32, 46, 81, 95, 445, 526
BseMI	GCAATG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	3 cut(s)	40, 61, 389
BseRI	GAGGAG	2 cut(s)	285, 542
BseXI	GCAGC	3 cut(s)	201, 445, 452
BseYI	CCCAGC	1 cut(s)	499
Bsh1236I	CGCG	1 cut(s)	319
BshFI	GGCC	4 cut(s)	29, 315, 370, 519
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	2 cut(s)	337, 666
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	3 cut(s)	26, 33, 54
BslI	CCNNNNNNNGG	6 cut(s)	32, 46, 81, 95, 445, 526
BsmAI	GTCTC	1 cut(s)	485
BsnI	GGCC	4 cut(s)	29, 315, 370, 519
Bso31I	GGTCTC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	3 cut(s)	90, 337, 666
Bsp143I	GATC	3 cut(s)	286, 588, 620
BspACI	CCGC	8 cut(s)	284, 317, 386, 398, 431, 439, 469, 570
BspANI	GGCC	4 cut(s)	29, 315, 370, 519
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	52, 87
BspPI	GGATC	2 cut(s)	294, 615
BspT107I	GGYRCC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	209
BsrFI	RCCGGY	2 cut(s)	25, 53
BsrI	ACTGG	3 cut(s)	40, 61, 389
BssAI	RCCGGY	2 cut(s)	25, 53
BssMI	GATC	3 cut(s)	286, 588, 620
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	3 cut(s)	411, 477, 521
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	5 cut(s)	27, 55, 317, 517, 666
BstDEI	CTNAG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	656
BstFNI	CGCG	1 cut(s)	319
BstH2I	RGCGCY	2 cut(s)	54, 439
BstHHI	GCGC	2 cut(s)	53, 438
BstKTI	GATC	3 cut(s)	289, 591, 623
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	3 cut(s)	286, 588, 620
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 214, 316, 346, 382
BstNI	CCWGG	3 cut(s)	411, 477, 521
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	3 cut(s)	409, 475, 519
BstSFI	CTRYAG	2 cut(s)	272, 643
BstUI	CGCG	1 cut(s)	319
BstV1I	GCAGC	3 cut(s)	201, 445, 452
BstV2I	GAAGAC	2 cut(s)	95, 183
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	29, 315, 370, 519
BtsCI	GGATG	1 cut(s)	656
BtsI	GCAGTG	2 cut(s)	167, 371
BtsIMutI	CAGTG	4 cut(s)	47, 68, 167, 371
Cac8I	GCNNGC	5 cut(s)	27, 55, 317, 517, 666
CfoI	GCGC	2 cut(s)	53, 438
Cfr10I	RCCGGY	2 cut(s)	25, 53
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	1 cut(s)	308
CsiI	ACCWGGT	1 cut(s)	475
Csp6I	GTAC	2 cut(s)	392, 428
CspCI	CAANNNNNGTGG	2 cut(s)	396, 431
CviJI	RGCY	9 cut(s)	29, 88, 132, 260, 315, 335, 370, 519, 664
CviKI_1	RGCY	9 cut(s)	29, 88, 132, 260, 315, 335, 370, 519, 664
CviQI	GTAC	2 cut(s)	392, 428
DdeI	CTNAG	1 cut(s)	222
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	3 cut(s)	288, 590, 622
DpnII	GATC	3 cut(s)	286, 588, 620
DrdI	GACNNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	638
EaeI	YGGCCR	2 cut(s)	368, 517
EciI	GGCGGA	2 cut(s)	299, 585
Ecl136II	GAGCTC	2 cut(s)	335, 664
Eco24I	GRGCYC	3 cut(s)	90, 337, 666
Eco31I	GGTCTC	1 cut(s)	485
Eco53kI	GAGCTC	2 cut(s)	335, 664
Eco57I	CTGAAG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	181
Eco91I	GGTNACC	1 cut(s)	35
EcoICRI	GAGCTC	2 cut(s)	335, 664
EcoO65I	GGTNACC	1 cut(s)	35
EcoRII	CCWGG	3 cut(s)	409, 475, 519
EcoT38I	GRGCYC	3 cut(s)	90, 337, 666
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaiI	YATR	1 cut(s)	607
FauI	CCCGC	1 cut(s)	324
FblI	GTMKAC	3 cut(s)	229, 642, 676
Fnu4HI	GCNGC	7 cut(s)	215, 386, 399, 434, 439, 466, 469
FokI	GGATG	1 cut(s)	663
FriOI	GRGCYC	3 cut(s)	90, 337, 666
Fsp4HI	GCNGC	7 cut(s)	215, 386, 399, 434, 439, 466, 469
FspBI	CTAG	1 cut(s)	592
GlaI	GCGC	2 cut(s)	52, 437
GluI	GCNGC	7 cut(s)	215, 386, 399, 434, 439, 466, 469
GsaI	CCCAGC	1 cut(s)	503
HaeII	RGCGCY	2 cut(s)	54, 439
HaeIII	GGCC	4 cut(s)	29, 315, 370, 519
HapII	CCGG	3 cut(s)	26, 33, 54
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	2 cut(s)	53, 438
Hin1I	GRCGYC	1 cut(s)	51
Hin6I	GCGC	2 cut(s)	51, 436
HinP1I	GCGC	2 cut(s)	51, 436
HindIII	AAGCTT	1 cut(s)	258
HpaII	CCGG	3 cut(s)	26, 33, 54
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	4 cut(s)	230, 407, 643, 677
Hpy188I	TCNGA	4 cut(s)	225, 265, 425, 509
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	4 cut(s)	230, 407, 643, 677
Hpy99I	CGWCG	2 cut(s)	155, 324
HpyCH4IV	ACGT	2 cut(s)	673, 679
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 214, 316, 346, 382
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	2 cut(s)	673, 679
Hsp92I	GRCGYC	1 cut(s)	51
HspAI	GCGC	2 cut(s)	51, 436
KasI	GGCGCC	1 cut(s)	50
KroI	GCCGGC	2 cut(s)	25, 53
KroNI	GCCGGC	2 cut(s)	27, 55
Kzo9I	GATC	3 cut(s)	286, 588, 620
LmnI	GCTCC	3 cut(s)	85, 345, 661
Lsp1109I	GCAGC	3 cut(s)	201, 445, 452
MabI	ACCWGGT	1 cut(s)	475
MaeI	CTAG	1 cut(s)	592
MaeII	ACGT	2 cut(s)	673, 679
MaeIII	GTNAC	2 cut(s)	35, 63
MalI	GATC	3 cut(s)	288, 590, 622
MboI	GATC	3 cut(s)	286, 588, 620
MboII	GAAGA	7 cut(s)	6, 95, 127, 179, 182, 185, 188
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	3 cut(s)	90, 337, 666
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	5 cut(s)	93, 112, 139, 602, 626
MluNI	TGGCCA	1 cut(s)	519
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	5 cut(s)	173, 235, 351, 412, 519
MmeI	TCCRAC	2 cut(s)	487, 662
Mox20I	TGGCCA	1 cut(s)	519
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	2 cut(s)	25, 53
MscI	TGGCCA	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	519
MspI	CCGG	3 cut(s)	26, 33, 54
MspR9I	CCNGG	3 cut(s)	411, 477, 521
MvaI	CCWGG	3 cut(s)	411, 477, 521
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	5 cut(s)	129, 214, 316, 346, 382
NaeI	GCCGGC	2 cut(s)	27, 55
NarI	GGCGCC	1 cut(s)	51
NdeII	GATC	3 cut(s)	286, 588, 620
NgoMIV	GCCGGC	2 cut(s)	25, 53
NlaIV	GGNNCC	2 cut(s)	52, 87
NmuCI	GTSAC	2 cut(s)	35, 63
PcsI	WCGNNNNNNNCGW	2 cut(s)	328, 636
PdiI	GCCGGC	2 cut(s)	27, 55
PfeI	GAWTC	5 cut(s)	71, 266, 324, 420, 636
PflFI	GACNNNGTC	1 cut(s)	477
PkrI	GCNGC	7 cut(s)	216, 387, 400, 435, 440, 467, 470
PleI	GAGTC	5 cut(s)	173, 234, 351, 411, 518
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	5 cut(s)	173, 234, 351, 411, 518
Psp124BI	GAGCTC	2 cut(s)	337, 666
Psp6I	CCWGG	3 cut(s)	409, 475, 519
PspEI	GGTNACC	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	499
PspGI	CCWGG	3 cut(s)	409, 475, 519
PspN4I	GGNNCC	2 cut(s)	52, 87
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	588
PsyI	GACNNNGTC	1 cut(s)	477
RsaI	GTAC	2 cut(s)	393, 429
RsaNI	GTAC	2 cut(s)	392, 428
SacI	GAGCTC	2 cut(s)	337, 666
SatI	GCNGC	7 cut(s)	215, 386, 399, 434, 439, 466, 469
Sau3AI	GATC	3 cut(s)	286, 588, 620
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	5 cut(s)	173, 235, 351, 412, 519
ScrFI	CCNGG	3 cut(s)	411, 477, 521
SduI	GDGCHC	3 cut(s)	90, 337, 666
SexAI	ACCWGGT	1 cut(s)	475
SfcI	CTRYAG	2 cut(s)	272, 643
SfoI	GGCGCC	1 cut(s)	52
SgrAI	CRCCGGYG	1 cut(s)	53
Sse9I	AATT	5 cut(s)	93, 112, 139, 602, 626
SsiI	CCGC	8 cut(s)	284, 317, 386, 398, 431, 439, 469, 570
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	592
SstI	GAGCTC	2 cut(s)	337, 666
StyD4I	CCNGG	3 cut(s)	409, 475, 519
TaiI	ACGT	2 cut(s)	676, 682
TaqI	TCGA	4 cut(s)	322, 331, 493, 630
TasI	AATT	5 cut(s)	93, 112, 139, 602, 626
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	4 cut(s)	388, 401, 441, 471
TfiI	GAWTC	5 cut(s)	71, 266, 324, 420, 636
TscAI	CASTG	4 cut(s)	47, 68, 167, 378
TseFI	GTSAC	2 cut(s)	35, 63
TseI	GCWGC	3 cut(s)	214, 433, 465
Tsp45I	GTSAC	2 cut(s)	35, 63
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	4 cut(s)	47, 68, 167, 378
Tth111I	GACNNNGTC	1 cut(s)	477
XapI	RAATTY	2 cut(s)	112, 626
XmiI	GTMKAC	3 cut(s)	229, 642, 676
XspI	CTAG	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.