Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Forward (+)

35433644 .. 35435214

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024391

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGCAGAGCGGAATGCAAGAAAGGCAAACTGCCAGTTTTGTTTACAAGGGAAATTTGCACATGTTTGTACACAGGGAGCCCTAAATTGGTCGTCTTCCCCAAAATTTCCAAAGCAAAAGGGGCTTCTTCAATTTCAATGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAGAGTCGACCTCGCCAAATCCTCCAAGAACAACAAGCTTCAGATACTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCCACCGAGCTCTGCTCCTACTGCTTCAACGACTCGTCGTTCGGCCACTGCTTCTCTTGCCGCCAGTACAAGCGGCGAGTCCACCGGGATTGCGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCGGGTCGTTGTTTGCTGCCACCGACCAGGTCTCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.08

Weight (kDa)

9.29

Isoelectric Point (pI)

57.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	312
AciI	CCGC	7 cut(s)	11, 277, 310, 379, 391, 424, 432
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	54, 105
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	3 cut(s)	71, 386, 422
AfiI	CCNNNNNNNGG	2 cut(s)	88, 438
AflIII	ACRYGT	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	132, 138, 346
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	2 cut(s)	253, 328
AluI	AGCT	2 cut(s)	253, 328
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	2 cut(s)	306, 361
ApeKI	GCWGC	3 cut(s)	207, 426, 458
ApoI	RAATTY	2 cut(s)	54, 105
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	307, 441
AsuC2I	CCSGG	2 cut(s)	404, 445
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	441
BanII	GRGCYC	2 cut(s)	83, 330
BbsI	GAAGAC	2 cut(s)	88, 176
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	194, 438, 445
BceAI	ACGGC	1 cut(s)	419
BciT130I	CCWGG	1 cut(s)	470
BcnI	CCSGG	2 cut(s)	404, 445
BcoDI	GTCTC	1 cut(s)	478
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	1 cut(s)	432
BisI	GCNGC	6 cut(s)	208, 379, 392, 427, 432, 459
BlsI	GCNGC	6 cut(s)	209, 380, 393, 428, 433, 460
Bme1390I	CCNGG	3 cut(s)	404, 445, 470
Bme18I	GGWCC	1 cut(s)	441
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	307, 441
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	3 cut(s)	404, 445, 470
BpiI	GAAGAC	2 cut(s)	88, 176
BplI	GAGNNNNNCTC	4 cut(s)	210, 242, 317, 349
BpuMI	CCSGG	2 cut(s)	404, 445
BsaI	GGTCTC	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 438
Bse1I	ACTGG	2 cut(s)	35, 382
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	470
BseLI	CCNNNNNNNGG	2 cut(s)	88, 438
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	35, 382
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	194, 438, 445
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	308, 363
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	403, 444
BslI	CCNNNNNNNGG	2 cut(s)	88, 438
BsmAI	GTCTC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	308, 363
Bso31I	GGTCTC	1 cut(s)	478
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	83, 330
Bsp1407I	TGTACA	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	7 cut(s)	11, 277, 310, 379, 391, 424, 432
BspANI	GGCC	2 cut(s)	308, 363
BspCNI	CTCAG	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	478
BsrBI	CCGCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	202
BsrGI	TGTACA	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	35, 382
BssMI	GATC	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 122, 207, 300, 309, 339, 375
BstNI	CCWGG	1 cut(s)	470
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	3 cut(s)	402, 443, 468
BstSFI	CTRYAG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	194, 438, 445
BstV2I	GAAGAC	2 cut(s)	88, 176
BsuRI	GGCC	2 cut(s)	308, 363
BtsI	GCAGTG	2 cut(s)	160, 364
BtsIMutI	CAGTG	2 cut(s)	160, 364
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	307, 441
CseI	GACGC	1 cut(s)	301
CsiI	ACCWGGT	1 cut(s)	468
Csp6I	GTAC	3 cut(s)	70, 385, 421
CspCI	CAANNNNNGTGG	2 cut(s)	389, 424
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	6 cut(s)	81, 125, 253, 308, 328, 363
CviKI_1	RGCY	6 cut(s)	81, 125, 253, 308, 328, 363
CviQI	GTAC	3 cut(s)	70, 385, 421
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	292
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	2 cut(s)	83, 330
Eco31I	GGTCTC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	441
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	468
EcoT38I	GRGCYC	2 cut(s)	83, 330
FaeI	CATG	1 cut(s)	66
FaiI	YATR	1 cut(s)	64
FatI	CATG	1 cut(s)	62
FauI	CCCGC	1 cut(s)	317
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	6 cut(s)	208, 379, 392, 427, 432, 459
FriOI	GRGCYC	2 cut(s)	83, 330
Fsp4HI	GCNGC	6 cut(s)	208, 379, 392, 427, 432, 459
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	6 cut(s)	208, 379, 392, 427, 432, 459
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	308, 363
HapII	CCGG	2 cut(s)	403, 444
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	6 cut(s)	172, 219, 317, 350, 396, 413
HpaII	CCGG	2 cut(s)	403, 444
Hpy166II	GTNNAC	4 cut(s)	45, 72, 223, 400
Hpy188I	TCNGA	3 cut(s)	218, 258, 418
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	4 cut(s)	45, 72, 223, 400
Hpy99I	CGWCG	4 cut(s)	148, 151, 317, 358
HpyCH4V	TGCA	3 cut(s)	18, 60, 294
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 122, 207, 300, 309, 339, 375
HpyF3I	CTNAG	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	66
HspAI	GCGC	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	78, 338
LpnPI	CCDG	8 cut(s)	48, 60, 203, 395, 416, 424, 455, 457
Lsp1109I	GCAGC	3 cut(s)	194, 438, 445
MabI	ACCWGGT	1 cut(s)	468
MalI	GATC	1 cut(s)	281
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	1 cut(s)	279
MboII	GAAGA	6 cut(s)	88, 120, 172, 175, 178, 181
MhlI	GDGCHC	2 cut(s)	83, 330
MluCI	AATT	4 cut(s)	54, 86, 105, 132
MlyI	GAGTC	4 cut(s)	166, 228, 344, 405
MnlI	CCTC	5 cut(s)	224, 236, 247, 296, 299
MspI	CCGG	2 cut(s)	403, 444
MspR9I	CCNGG	3 cut(s)	404, 445, 470
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	7 cut(s)	24, 122, 207, 300, 309, 339, 375
NciI	CCSGG	2 cut(s)	404, 445
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	66
PciI	ACATGT	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	317, 413
PflFI	GACNNNGTC	1 cut(s)	470
PkrI	GCNGC	6 cut(s)	209, 380, 393, 428, 433, 460
PleI	GAGTC	4 cut(s)	166, 227, 344, 404
PpsI	GAGTC	4 cut(s)	166, 227, 344, 404
PscI	ACATGT	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	2 cut(s)	307, 441
PsyI	GACNNNGTC	1 cut(s)	470
RsaI	GTAC	3 cut(s)	71, 386, 422
RsaNI	GTAC	3 cut(s)	70, 385, 421
SacI	GAGCTC	1 cut(s)	330
SalI	GTCGAC	1 cut(s)	221
SatI	GCNGC	6 cut(s)	208, 379, 392, 427, 432, 459
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	2 cut(s)	307, 441
SchI	GAGTC	4 cut(s)	166, 228, 344, 405
ScrFI	CCNGG	3 cut(s)	404, 445, 470
SduI	GDGCHC	2 cut(s)	83, 330
SetI	ASST	6 cut(s)	192, 216, 228, 255, 330, 474
SexAI	ACCWGGT	1 cut(s)	468
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	441
Sse9I	AATT	4 cut(s)	54, 86, 105, 132
SsiI	CCGC	7 cut(s)	11, 277, 310, 379, 391, 424, 432
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	402, 443, 468
TaqI	TCGA	2 cut(s)	222, 315
TasI	AATT	4 cut(s)	54, 86, 105, 132
TatI	WGTACW	2 cut(s)	69, 384
TauI	GCSGC	3 cut(s)	381, 394, 434
TfiI	GAWTC	2 cut(s)	317, 413
TscAI	CASTG	2 cut(s)	160, 371
TseI	GCWGC	3 cut(s)	207, 426, 458
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	2 cut(s)	160, 371
Tth111I	GACNNNGTC	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	2 cut(s)	54, 105
XceI	RCATGY	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.