Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Forward (+)

22403380 .. 22404411

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGACGAACAACGAAGATCCGCACTCGCAATCGACGAAGAAAACCAGAGAGTTGCCGAATCTGTCGGAGTGCCATTGTTGCCACCTGAGAGTCGACATTGCCAACGCCAGCGCCAAGAGCAAGCTTCACATCCTCTACAGCGAGTGGCGCGTCGTCCTCCTCTGCAAGAAATGCCTCTCCCGGGTCGAGTCATCGGAGCTCTGCTCCTTCTGCTTCGCCGCCACTTCGCCGTCGCAGGACGACTCCTTCATTTGCTGCCAGTGTAACCGGAGAGTACACAGGCATTGCGATTCTGAGTATCGAGGGATTGCGCTGTTATCTCAGGATTCTTGCTTGGCGGTGGAGGTTGGGGTTTGCGCCGATTGTTGGCTGCCGGAGTCGCTGGCACGGTGGAGAGGGGTTATGAGGATTCAGAAGGCGCGAAGGAGTGGAAAGGGGAGAGCTTGTTTGGGATTGAGGAAGTATAGGGTTTCGGCCGTGCTGGATGGCAGGACAATTCATGATGTGTCTGGTGCTGAAGAGGGCTCAAAGGATGCGGATGTCCATGACGATGACGATGACGATGATGATGATGATGATAATGGGCATTTGGCTGCCATGAATAGCTCTGCTAAAAAGCTGTGTTCGCCGAATTTGAGTGTGTGTGTTTGTGATTCGTGGACTGCTGTTGGTTGTTTGAAGCTGGATATCGAAGAGGAGAATGAGGACGATGACGGGCTGTTGATGGAAGGACAAGGGAGCAGCTCCAATGGCGTTGATGCTCTCAATAAACAAGAGCTAGATGAATGTGTGTGTGTTACAACGCTGAAAGACAAAAGGCGCAATTCTAAACTTGATCCTTTTTACTTCAAGTACAGGAAGAGGAGCACGGTTAATCAGTCCATGGTAACATATAAGAGAAGGCCCAAAAAACTCAATCCTTGTTCTATGTTAACATATAAGAGAAGGAGACCCAAAAGCCACCTCTTTGCTTGTCATATGTTAACATATAAGAGAAAGAGACCCACAATCCTATATGATCGTTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

38.82

Weight (kDa)

8.25

Isoelectric Point (pI)

67.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	2 cut(s)	150, 421
AciI	CCGC	4 cut(s)	20, 219, 338, 536
AclWI	GGATC	2 cut(s)	11, 830
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	2 cut(s)	276, 854
AfiI	CCNNNNNNNGG	2 cut(s)	181, 366
AgsI	TTSAA	2 cut(s)	679, 850
AluBI	AGCT	8 cut(s)	124, 199, 443, 606, 619, 682, 744, 778
AluI	AGCT	8 cut(s)	124, 199, 443, 606, 619, 682, 744, 778
Alw21I	GWGCWC	2 cut(s)	201, 869
Alw26I	GTCTC	2 cut(s)	943, 994
AlwI	GGATC	2 cut(s)	11, 830
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	2 cut(s)	474, 902
ApeKI	GCWGC	4 cut(s)	255, 370, 593, 741
ApoI	RAATTY	1 cut(s)	631
AspLEI	GCGC	6 cut(s)	113, 150, 313, 359, 421, 822
AspS9I	GGNCC	1 cut(s)	903
AsuC2I	CCSGG	2 cut(s)	181, 182
AvaI	CYCGRG	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	201, 527
Bbv12I	GWGCWC	2 cut(s)	201, 869
BbvI	GCAGC	4 cut(s)	242, 357, 580, 753
BccI	CCATC	2 cut(s)	479, 718
BceAI	ACGGC	2 cut(s)	214, 461
BcnI	CCSGG	2 cut(s)	181, 182
BcoDI	GTCTC	2 cut(s)	943, 994
BfaI	CTAG	1 cut(s)	779
BfmI	CTRYAG	1 cut(s)	136
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	5 cut(s)	219, 256, 371, 594, 742
BlsI	GCNGC	5 cut(s)	220, 257, 372, 595, 743
Bme1390I	CCNGG	2 cut(s)	181, 182
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	903
BmrFI	CCNGG	2 cut(s)	181, 182
BmsI	GCATC	2 cut(s)	523, 748
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpuMI	CCSGG	2 cut(s)	181, 182
BsaI	GGTCTC	2 cut(s)	943, 994
BsaJI	CCNNGG	2 cut(s)	180, 882
BsaWI	WCCGGW	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 366
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	2 cut(s)	96, 283
BseDI	CCNNGG	2 cut(s)	180, 882
BseGI	GGATG	4 cut(s)	129, 490, 538, 544
BseLI	CCNNNNNNNGG	2 cut(s)	181, 366
BseMI	GCAATG	2 cut(s)	96, 283
BseMII	CTCAG	3 cut(s)	77, 285, 335
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	3 cut(s)	149, 710, 877
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	4 cut(s)	242, 357, 580, 753
Bsh1236I	CGCG	2 cut(s)	150, 421
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	2 cut(s)	476, 904
BsiEI	CGRYCG	1 cut(s)	477
BsiHKAI	GWGCWC	2 cut(s)	201, 869
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	3 cut(s)	181, 268, 374
BslI	CCNNNNNNNGG	2 cut(s)	181, 366
BsmAI	GTCTC	2 cut(s)	943, 994
BsnI	GGCC	2 cut(s)	476, 904
Bso31I	GGTCTC	2 cut(s)	943, 994
BsoBI	CYCGRG	1 cut(s)	180
Bsp1286I	GDGCHC	3 cut(s)	201, 527, 869
Bsp143I	GATC	3 cut(s)	16, 835, 1018
Bsp19I	CCATGG	1 cut(s)	882
BspACI	CCGC	4 cut(s)	20, 219, 338, 536
BspANI	GGCC	2 cut(s)	476, 904
BspCNI	CTCAG	3 cut(s)	78, 286, 334
BspFNI	CGCG	2 cut(s)	150, 421
BspHI	TCATGA	1 cut(s)	499
BspPI	GGATC	2 cut(s)	11, 830
BspTNI	GGTCTC	2 cut(s)	943, 994
BsrDI	GCAATG	2 cut(s)	96, 283
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	180, 882
BssMI	GATC	3 cut(s)	16, 835, 1018
BssT1I	CCWWGG	1 cut(s)	882
Bst4CI	ACNGT	2 cut(s)	390, 871
Bst6I	CTCTTC	3 cut(s)	513, 687, 854
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	109, 122, 384
BstDEI	CTNAG	3 cut(s)	86, 294, 321
BstDSI	CCRYGG	1 cut(s)	882
BstF5I	GGATG	4 cut(s)	129, 490, 538, 544
BstFNI	CGCG	2 cut(s)	150, 421
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	6 cut(s)	113, 150, 313, 359, 421, 822
BstKTI	GATC	3 cut(s)	19, 838, 1021
BstMAI	GTCTC	2 cut(s)	943, 994
BstMBI	GATC	3 cut(s)	16, 835, 1018
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	8 cut(s)	78, 117, 147, 171, 210, 379, 625, 750
BstSCI	CCNGG	2 cut(s)	179, 180
BstSFI	CTRYAG	1 cut(s)	136
BstUI	CGCG	2 cut(s)	150, 421
BstV1I	GCAGC	4 cut(s)	242, 357, 580, 753
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BstZI	CGGCCG	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	476, 904
BtgI	CCRYGG	1 cut(s)	882
BtsCI	GGATG	4 cut(s)	129, 490, 538, 544
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	3 cut(s)	109, 122, 384
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	6 cut(s)	113, 150, 313, 359, 421, 822
Cfr13I	GGNCC	1 cut(s)	903
Cfr9I	CCCGGG	1 cut(s)	180
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	275, 853
CviAII	CATG	4 cut(s)	500, 545, 598, 883
CviQI	GTAC	2 cut(s)	275, 853
DdeI	CTNAG	3 cut(s)	86, 294, 321
DpnI	GATC	3 cut(s)	18, 837, 1020
DpnII	GATC	3 cut(s)	16, 835, 1018
EaeI	YGGCCR	1 cut(s)	474
EagI	CGGCCG	1 cut(s)	474
Eam1104I	CTCTTC	3 cut(s)	513, 687, 854
EarI	CTCTTC	3 cut(s)	513, 687, 854
Ecl136II	GAGCTC	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	882
Eco24I	GRGCYC	2 cut(s)	201, 527
Eco31I	GGTCTC	2 cut(s)	943, 994
Eco32I	GATATC	1 cut(s)	688
Eco52I	CGGCCG	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	537
Eco88I	CYCGRG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	688
EcoT14I	CCWWGG	1 cut(s)	882
EcoT38I	GRGCYC	2 cut(s)	201, 527
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	4 cut(s)	503, 548, 601, 886
FatI	CATG	4 cut(s)	499, 544, 597, 882
FauNDI	CATATG	1 cut(s)	978
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	5 cut(s)	219, 256, 371, 594, 742
FokI	GGATG	4 cut(s)	116, 497, 545, 551
FriOI	GRGCYC	2 cut(s)	201, 527
Fsp4HI	GCNGC	5 cut(s)	219, 256, 371, 594, 742
FspBI	CTAG	1 cut(s)	779
GlaI	GCGC	6 cut(s)	112, 149, 312, 358, 420, 821
GluI	GCNGC	5 cut(s)	219, 256, 371, 594, 742
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	476, 904
HapII	CCGG	3 cut(s)	181, 268, 374
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	6 cut(s)	113, 150, 313, 359, 421, 822
Hin1II	CATG	4 cut(s)	503, 548, 601, 886
Hin6I	GCGC	6 cut(s)	111, 148, 311, 357, 419, 820
HinP1I	GCGC	6 cut(s)	111, 148, 311, 357, 419, 820
HincII	GTYRAC	3 cut(s)	94, 933, 984
HindII	GTYRAC	3 cut(s)	94, 933, 984
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	9 cut(s)	58, 90, 188, 242, 290, 326, 377, 409, 653
HpaI	GTTAAC	2 cut(s)	933, 984
HpaII	CCGG	3 cut(s)	181, 268, 374
Hpy166II	GTNNAC	5 cut(s)	94, 277, 660, 933, 984
Hpy188I	TCNGA	4 cut(s)	67, 196, 295, 414
Hpy188III	TCNNGA	3 cut(s)	323, 500, 1029
Hpy8I	GTNNAC	5 cut(s)	94, 277, 660, 933, 984
Hpy99I	CGWCG	3 cut(s)	37, 155, 235
HpyAV	CCTTC	7 cut(s)	217, 256, 409, 417, 722, 894, 939
HpyCH4III	ACNGT	2 cut(s)	390, 871
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	8 cut(s)	78, 117, 147, 171, 210, 379, 625, 750
HpyF3I	CTNAG	3 cut(s)	86, 294, 321
Hsp92II	CATG	4 cut(s)	503, 548, 601, 886
HspAI	GCGC	6 cut(s)	111, 148, 311, 357, 419, 820
KspAI	GTTAAC	2 cut(s)	933, 984
Kzo9I	GATC	3 cut(s)	16, 835, 1018
LmnI	GCTCC	5 cut(s)	196, 209, 738, 749, 864
Lsp1109I	GCAGC	4 cut(s)	242, 357, 580, 753
LweI	GCATC	2 cut(s)	523, 748
MaeI	CTAG	1 cut(s)	779
MaeIII	GTNAC	3 cut(s)	263, 796, 886
MalI	GATC	3 cut(s)	18, 837, 1020
MboI	GATC	3 cut(s)	16, 835, 1018
MboII	GAAGA	5 cut(s)	26, 49, 530, 704, 871
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	3 cut(s)	201, 527, 869
MluCI	AATT	3 cut(s)	495, 631, 823
MlyI	GAGTC	4 cut(s)	99, 197, 236, 386
MmeI	TCCRAC	1 cut(s)	45
MseI	TTAA	3 cut(s)	873, 932, 983
MslI	CAYNNNNRTG	1 cut(s)	549
MspI	CCGG	3 cut(s)	181, 268, 374
MspR9I	CCNGG	2 cut(s)	181, 182
MvnI	CGCG	2 cut(s)	150, 421
MwoI	GCNNNNNNNGC	8 cut(s)	78, 117, 147, 171, 210, 379, 625, 750
NciI	CCSGG	2 cut(s)	181, 182
NcoI	CCATGG	1 cut(s)	882
NdeI	CATATG	1 cut(s)	978
NdeII	GATC	3 cut(s)	16, 835, 1018
NlaIII	CATG	4 cut(s)	503, 548, 601, 886
PagI	TCATGA	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	5 cut(s)	58, 290, 326, 409, 653
PkrI	GCNGC	5 cut(s)	220, 257, 372, 595, 743
PleI	GAGTC	4 cut(s)	98, 196, 236, 385
PpsI	GAGTC	4 cut(s)	98, 196, 236, 385
Psp124BI	GAGCTC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	903
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	2 cut(s)	276, 854
RsaNI	GTAC	2 cut(s)	275, 853
RseI	CAYNNNNRTG	1 cut(s)	549
SacI	GAGCTC	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	873, 932, 983
SatI	GCNGC	5 cut(s)	219, 256, 371, 594, 742
Sau3AI	GATC	3 cut(s)	16, 835, 1018
Sau96I	GGNCC	1 cut(s)	903
SchI	GAGTC	4 cut(s)	99, 197, 236, 386
ScrFI	CCNGG	2 cut(s)	181, 182
SduI	GDGCHC	3 cut(s)	201, 527, 869
SfaNI	GCATC	2 cut(s)	523, 748
SfcI	CTRYAG	1 cut(s)	136
SmaI	CCCGGG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	549
Sse9I	AATT	3 cut(s)	495, 631, 823
SsiI	CCGC	4 cut(s)	20, 219, 338, 536
SspMI	CTAG	1 cut(s)	779
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	179, 180
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	2 cut(s)	390, 871
TaqI	TCGA	5 cut(s)	32, 93, 186, 301, 690
TasI	AATT	3 cut(s)	495, 631, 823
TatI	WGTACW	2 cut(s)	274, 852
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	5 cut(s)	58, 290, 326, 409, 653
Tru1I	TTAA	3 cut(s)	873, 932, 983
Tru9I	TTAA	3 cut(s)	873, 932, 983
TscAI	CASTG	1 cut(s)	266
TseI	GCWGC	4 cut(s)	255, 370, 593, 741
TspDTI	ATGAA	5 cut(s)	238, 488, 614, 798, 1014
TspMI	CCCGGG	1 cut(s)	180
TspRI	CASTG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	631
XmaI	CCCGGG	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.