Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Forward (+)

23786211 .. 23789863

Gene Structure 3653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012909

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAGAGTTGACCTCGCCAAATCCTCCAAGAACAACAAGCTTCAGATACTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCCACCGAGCTCTGCTCCTACTGCTTCAACGACTCGTCGTTCGGCCACTGCTTCTCTTGCCGCCAGTACAAGCGGCGAGTCCACCGGGATTGCGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCGGGTCGTTGTCTGCTGCCACCGACCAGGGTTGGAGTTTGAATCGATTAAGTAGAGCGGAGGAAGAGATAAGAATCGGAGAAGTGGGTTCAAGTGTTCAGTGCCGAAATTGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.08

Weight (kDa)

8.8

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	362
AccII	CGCG	1 cut(s)	174
AciI	CCGC	7 cut(s)	139, 172, 241, 253, 286, 294, 362
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	248, 284
AfiI	CCNNNNNNNGG	2 cut(s)	300, 415
AgsI	TTSAA	3 cut(s)	208, 346, 396
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	2 cut(s)	115, 190
AluI	AGCT	2 cut(s)	115, 190
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	168, 223
ApeKI	GCWGC	3 cut(s)	69, 288, 320
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	169, 303
AsuC2I	CCSGG	2 cut(s)	266, 307
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	56, 300, 307
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	332
BcnI	CCSGG	2 cut(s)	266, 307
BfmI	CTRYAG	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	294
BisI	GCNGC	6 cut(s)	70, 241, 254, 289, 294, 321
BlsI	GCNGC	6 cut(s)	71, 242, 255, 290, 295, 322
Bme1390I	CCNGG	3 cut(s)	266, 307, 332
Bme18I	GGWCC	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	169, 303
BmrFI	CCNGG	3 cut(s)	266, 307, 332
BpiI	GAAGAC	1 cut(s)	38
BplI	GAGNNNNNCTC	4 cut(s)	72, 104, 179, 211
BpuMI	CCSGG	2 cut(s)	266, 307
Bsa29I	ATCGAT	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 415
Bse1I	ACTGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	332
BseCI	ATCGAT	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	377
BseLI	CCNNNNNNNGG	2 cut(s)	300, 415
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	56, 300, 307
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	170, 225
BshVI	ATCGAT	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	265, 306
BslI	CCNNNNNNNGG	2 cut(s)	300, 415
BsnI	GGCC	2 cut(s)	170, 225
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	7 cut(s)	139, 172, 241, 253, 286, 294, 362
BspANI	GGCC	2 cut(s)	170, 225
BspCNI	CTCAG	1 cut(s)	90
BspDI	ATCGAT	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	149
BsrBI	CCGCTC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	77
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 162, 171, 201, 237
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	264, 305, 330
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	56, 300, 307
BstV2I	GAAGAC	1 cut(s)	38
Bsu15I	ATCGAT	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	170, 225
BsuTUI	ATCGAT	1 cut(s)	349
BtsI	GCAGTG	2 cut(s)	22, 226
BtsIMutI	CAGTG	3 cut(s)	22, 226, 410
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	169, 303
ClaI	ATCGAT	1 cut(s)	349
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	247, 283
CspCI	CAANNNNNGTGG	2 cut(s)	251, 286
CviJI	RGCY	4 cut(s)	115, 170, 190, 225
CviKI_1	RGCY	4 cut(s)	115, 170, 190, 225
CviQI	GTAC	2 cut(s)	247, 283
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	192
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	6 cut(s)	70, 241, 254, 289, 294, 321
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	6 cut(s)	70, 241, 254, 289, 294, 321
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	6 cut(s)	70, 241, 254, 289, 294, 321
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	170, 225
HapII	CCGG	2 cut(s)	265, 306
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	293
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	7 cut(s)	34, 179, 212, 258, 275, 346, 378
HpaII	CCGG	2 cut(s)	265, 306
Hpy166II	GTNNAC	2 cut(s)	85, 262
Hpy188I	TCNGA	4 cut(s)	80, 120, 280, 383
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	2 cut(s)	85, 262
Hpy99I	CGWCG	4 cut(s)	10, 13, 179, 220
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 162, 171, 201, 237
HpyF3I	CTNAG	1 cut(s)	77
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	7 cut(s)	65, 257, 278, 286, 317, 319, 344
Lsp1109I	GCAGC	3 cut(s)	56, 300, 307
MalI	GATC	1 cut(s)	143
MbiI	CCGCTC	1 cut(s)	362
MboI	GATC	1 cut(s)	141
MboII	GAAGA	5 cut(s)	34, 37, 40, 43, 380
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	412
MlyI	GAGTC	3 cut(s)	28, 206, 267
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	6 cut(s)	86, 98, 109, 158, 161, 358
MseI	TTAA	2 cut(s)	353, 421
MspI	CCGG	2 cut(s)	265, 306
MspR9I	CCNGG	3 cut(s)	266, 307, 332
MvaI	CCWGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	5 cut(s)	69, 162, 171, 201, 237
NciI	CCSGG	2 cut(s)	266, 307
NdeII	GATC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	4 cut(s)	179, 275, 346, 378
PkrI	GCNGC	6 cut(s)	71, 242, 255, 290, 295, 322
PleI	GAGTC	3 cut(s)	28, 206, 266
PpsI	GAGTC	3 cut(s)	28, 206, 266
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspPI	GGNCC	2 cut(s)	169, 303
RsaI	GTAC	2 cut(s)	248, 284
RsaNI	GTAC	2 cut(s)	247, 283
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	353, 421
SatI	GCNGC	6 cut(s)	70, 241, 254, 289, 294, 321
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	169, 303
SchI	GAGTC	3 cut(s)	28, 206, 267
ScrFI	CCNGG	3 cut(s)	266, 307, 332
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	5 cut(s)	54, 78, 90, 117, 192
SfcI	CTRYAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	303
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	7 cut(s)	139, 172, 241, 253, 286, 294, 362
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	3 cut(s)	264, 305, 330
TaqI	TCGA	2 cut(s)	177, 349
TasI	AATT	1 cut(s)	412
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	3 cut(s)	243, 256, 296
TfiI	GAWTC	4 cut(s)	179, 275, 346, 378
Tru1I	TTAA	2 cut(s)	353, 421
Tru9I	TTAA	2 cut(s)	353, 421
TscAI	CASTG	3 cut(s)	22, 233, 410
TseI	GCWGC	3 cut(s)	69, 288, 320
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	3 cut(s)	22, 233, 410
VpaK11BI	GGWCC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.