Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Forward (+)

56718740 .. 56725393

Gene Structure 6654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG294400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAGAGTCGACCTCGCCAAATCCTCCAAGAACAACAAGCTTCAGATTCTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCTACCGAGCTCTGCTCCAACTGCTTCAACGACTCGTCGTTCGGCCACTGCTTCTCTTGCCGCCAGTACAAGCGGCGAGTCCACCGGGATTGCTATTCCGAGTACCGCAGCGCCGCCATCTGGTCCGGGTCATTGTCTGCTGCCGCCGACCAGAGCCTTGCCTTGAAACAGAGCTGCATTTTTACTGAGAAAAGCAATAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.68

Weight (kDa)

9.11

Isoelectric Point (pI)

66.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	174
AciI	CCGC	7 cut(s)	139, 172, 241, 253, 286, 294, 324
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	248, 284
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	208, 346
AluBI	AGCT	4 cut(s)	115, 190, 354, 382
AluI	AGCT	4 cut(s)	115, 190, 354, 382
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	168, 223
ApeKI	GCWGC	4 cut(s)	69, 288, 320, 354
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	169, 303
AsuC2I	CCSGG	2 cut(s)	266, 307
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	56, 300, 307, 341
BccI	CCATC	1 cut(s)	305
BcnI	CCSGG	2 cut(s)	266, 307
BfmI	CTRYAG	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	294
BisI	GCNGC	8 cut(s)	70, 241, 254, 289, 294, 321, 324, 355
BlsI	GCNGC	8 cut(s)	71, 242, 255, 290, 295, 322, 325, 356
Bme1390I	CCNGG	2 cut(s)	266, 307
Bme18I	GGWCC	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	169, 303
BmrFI	CCNGG	2 cut(s)	266, 307
BpiI	GAAGAC	1 cut(s)	38
BplI	GAGNNNNNCTC	4 cut(s)	72, 104, 179, 211
BpuMI	CCSGG	2 cut(s)	266, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	91, 357
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	56, 300, 307, 341
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	170, 225
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	265, 306
BslI	CCNNNNNNNGG	1 cut(s)	300
BsnI	GGCC	2 cut(s)	170, 225
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	7 cut(s)	139, 172, 241, 253, 286, 294, 324
BspANI	GGCC	2 cut(s)	170, 225
BspCNI	CTCAG	2 cut(s)	90, 358
BspFNI	CGCG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	77, 366
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 162, 171, 201, 237
BstSCI	CCNGG	2 cut(s)	264, 305
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	4 cut(s)	56, 300, 307, 341
BstV2I	GAAGAC	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	170, 225
BtsI	GCAGTG	2 cut(s)	22, 226
BtsIMutI	CAGTG	2 cut(s)	22, 226
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	169, 303
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	247, 283
CspCI	CAANNNNNGTGG	2 cut(s)	251, 286
CviJI	RGCY	7 cut(s)	115, 170, 190, 225, 336, 354, 382
CviKI_1	RGCY	7 cut(s)	115, 170, 190, 225, 336, 354, 382
CviQI	GTAC	2 cut(s)	247, 283
DdeI	CTNAG	2 cut(s)	77, 366
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	192
FauI	CCCGC	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	8 cut(s)	70, 241, 254, 289, 294, 321, 324, 355
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	8 cut(s)	70, 241, 254, 289, 294, 321, 324, 355
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	8 cut(s)	70, 241, 254, 289, 294, 321, 324, 355
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	170, 225
HapII	CCGG	2 cut(s)	265, 306
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	293
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	2 cut(s)	113, 380
HinfI	GANTC	6 cut(s)	34, 81, 121, 179, 212, 258
HpaII	CCGG	2 cut(s)	265, 306
Hpy166II	GTNNAC	2 cut(s)	85, 262
Hpy188I	TCNGA	3 cut(s)	80, 120, 280
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	2 cut(s)	85, 262
Hpy99I	CGWCG	4 cut(s)	10, 13, 179, 220
HpyCH4V	TGCA	2 cut(s)	156, 357
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 162, 171, 201, 237
HpyF3I	CTNAG	2 cut(s)	77, 366
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	6 cut(s)	65, 257, 278, 286, 319, 344
Lsp1109I	GCAGC	4 cut(s)	56, 300, 307, 341
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	4 cut(s)	34, 37, 40, 43
MhlI	GDGCHC	1 cut(s)	192
MlyI	GAGTC	4 cut(s)	28, 90, 206, 267
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	5 cut(s)	86, 98, 109, 158, 161
MspI	CCGG	2 cut(s)	265, 306
MspR9I	CCNGG	2 cut(s)	266, 307
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	5 cut(s)	69, 162, 171, 201, 237
NciI	CCSGG	2 cut(s)	266, 307
NdeII	GATC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	121, 179
PkrI	GCNGC	8 cut(s)	71, 242, 255, 290, 295, 322, 325, 356
PleI	GAGTC	4 cut(s)	28, 89, 206, 266
PpsI	GAGTC	4 cut(s)	28, 89, 206, 266
Psp124BI	GAGCTC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	169, 303
RsaI	GTAC	2 cut(s)	248, 284
RsaNI	GTAC	2 cut(s)	247, 283
SacI	GAGCTC	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	83
SatI	GCNGC	8 cut(s)	70, 241, 254, 289, 294, 321, 324, 355
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	169, 303
SchI	GAGTC	4 cut(s)	28, 90, 206, 267
ScrFI	CCNGG	2 cut(s)	266, 307
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	7 cut(s)	54, 78, 90, 117, 192, 356, 384
SfcI	CTRYAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	303
SsiI	CCGC	7 cut(s)	139, 172, 241, 253, 286, 294, 324
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	264, 305
TaqI	TCGA	2 cut(s)	84, 177
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	4 cut(s)	243, 256, 296, 326
TfiI	GAWTC	2 cut(s)	121, 179
TscAI	CASTG	2 cut(s)	22, 233
TseI	GCWGC	4 cut(s)	69, 288, 320, 354
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	2 cut(s)	22, 233
VpaK11BI	GGWCC	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.