Rh3DG014100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002273
Physical Location & Seq
Reverse (-)
837978 .. 838928
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG014100.1

Sequence Viewer

Length: 951 bp
ATGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAGAGTCGACCTCGCCAAATCCTCCCAGAACAACAAGCTTCAGATTCTCTACAGCGAGTGGCGAATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCCACCGAGCTCTGCTCCTACTGCTTCAACGACTCGTCGTCCGGCCACTGCTTCTCTTGCCGCCAGTGCAGGCGGCGAGTCCACAGGGACTGCGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCGGGTCGTCGTCTGCGGCCGCCGACGAGGTCTCTGTCTGCGCCGATTGCTGGGTGTCGGAGTCGCTAGCCAGGTGGAGGAGAAGTAGAAACGTCAGTAGTGGTACAAAGAGTAGGGCGGATTTGGGATTGGGGAGATCTAGGGTTTTGAAGTATGAGAGGAAATGTGATCCAAATTCGACTGATTCATCTACAGAGGAGGAGGCCGGGTGCTTGAGACTTGATGGTGTTGAAGAAGAAGAAGAAGAAGAGATTGGGGATGATGAGCCGTTGAAGGAAGGACAAGGGAGTTGCTCAAATGGTGTCGAATCGGAGTCTCCACCGTCTTATAAACAAGATGACTGCAACTGTATCGCTTTGCCGAAAGTCGAAATTGGGAATGCAAAGCTTGATCCTTATTATTTCAAGTACAGGAGGAGGAGCAGTGTTGATCAGTCTCTGTTGACATACAAGAGGAGGAGCATTGTTGACTGCTTTAAGATTGATTGCCCTCTGTTGACATATAAGAGGAGAGGCTGTGTTGACTATCGGTTTATGTTTACGTATAAGAGGAGGAGGAACTTTGATCAATCTATGTTGACATATAAGAGGAGGAGACCTGAAATCGTTTTCGCGAGTTCAAAGATGCAGCTCGAGGGTCAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

36.33

Weight (kDa)

8.47

Isoelectric Point (pI)

85.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 633
AccI GTMKAC 1 cut(s) 84
AccII CGCG 2 cut(s) 174, 917
AciI CCGC 8 cut(s) 172, 241, 253, 286, 294, 320, 324, 422
AclWI GGATC 2 cut(s) 467, 689
AcoI YGGCCR 2 cut(s) 223, 321
AcsI RAATTY 1 cut(s) 478
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 3 cut(s) 284, 409, 713
AfiI CCNNNNNNNGG 3 cut(s) 300, 354, 381
AgsI TTSAA 6 cut(s) 208, 454, 536, 577, 709, 924
AhdI GACNNNNNGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 374
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AluBI AGCT 4 cut(s) 115, 190, 691, 934
AluI AGCT 4 cut(s) 115, 190, 691, 934
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 5 cut(s) 340, 514, 624, 744, 892
AlwI GGATC 2 cut(s) 467, 689
AlwNI CAGNNNCTG 2 cut(s) 270, 742
Ama87I CYCGRG 2 cut(s) 36, 935
AoxI GGCC 4 cut(s) 168, 223, 321, 507
ApeKI GCWGC 3 cut(s) 69, 288, 931
ApoI RAATTY 1 cut(s) 478
AspLEI GCGC 2 cut(s) 293, 347
AspS9I GGNCC 2 cut(s) 169, 303
AsuC2I CCSGG 2 cut(s) 307, 511
AsuNHI GCTAGC 1 cut(s) 370
AvaI CYCGRG 2 cut(s) 36, 935
AvaII GGWCC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 3 cut(s) 56, 300, 943
BccI CCATC 1 cut(s) 521
BceAI ACGGC 2 cut(s) 281, 556
BcgI CGANNNNNNTGC 2 cut(s) 637, 671
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 2 cut(s) 733, 868
BcnI CCSGG 2 cut(s) 307, 511
BcoDI GTCTC 5 cut(s) 340, 514, 624, 744, 892
BfaI CTAG 2 cut(s) 371, 444
BfmI CTRYAG 2 cut(s) 127, 495
BfoI RGCGCY 1 cut(s) 294
BglII AGATCT 1 cut(s) 440
BisI GCNGC 8 cut(s) 70, 241, 254, 289, 294, 321, 324, 932
BlsI GCNGC 8 cut(s) 71, 242, 255, 290, 295, 322, 325, 933
Bme1390I CCNGG 3 cut(s) 307, 376, 511
Bme18I GGWCC 1 cut(s) 303
BmeRI GACNNNNNGTC 1 cut(s) 217
BmeT110I CYCGRG 2 cut(s) 36, 935
BmgT120I GGNCC 2 cut(s) 169, 303
BmrFI CCNGG 3 cut(s) 307, 376, 511
BmsI GCATC 1 cut(s) 918
BmtI GCTAGC 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 38
BplI GAGNNNNNCTC 4 cut(s) 72, 104, 179, 211
BpuEI CTTGAG 1 cut(s) 538
BpuMI CCSGG 2 cut(s) 307, 511
BsaAI YACGTR 1 cut(s) 846
BsaI GGTCTC 2 cut(s) 340, 892
BsaXI ACNNNNNCTCC 8 cut(s) 373, 403, 497, 527, 712, 742, 805, 835
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 354, 381
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 376
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 3 cut(s) 300, 354, 381
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 244
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 3 cut(s) 56, 300, 943
BseYI CCCAGC 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 268
Bsh1236I CGCG 2 cut(s) 174, 917
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 4 cut(s) 170, 225, 323, 509
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 2 cut(s) 36, 935
BsiSI CCGG 3 cut(s) 222, 306, 510
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 3 cut(s) 300, 354, 381
BsmAI GTCTC 5 cut(s) 340, 514, 624, 744, 892
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 4 cut(s) 170, 225, 323, 509
Bso31I GGTCTC 2 cut(s) 340, 892
BsoBI CYCGRG 2 cut(s) 36, 935
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 5 cut(s) 440, 472, 694, 733, 868
Bsp68I TCGCGA 1 cut(s) 917
BspACI CCGC 8 cut(s) 172, 241, 253, 286, 294, 320, 324, 422
BspANI GGCC 4 cut(s) 170, 225, 323, 509
BspCNI CTCAG 1 cut(s) 90
BspFNI CGCG 2 cut(s) 174, 917
BspOI GCTAGC 1 cut(s) 374
BspPI GGATC 2 cut(s) 467, 689
BspTNI GGTCTC 2 cut(s) 340, 892
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 1 cut(s) 244
BssMI GATC 5 cut(s) 440, 472, 694, 733, 868
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 627, 653
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 846
BstC8I GCNNGC 3 cut(s) 172, 251, 372
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 568
BstFNI CGCG 2 cut(s) 174, 917
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 2 cut(s) 293, 347
BstKTI GATC 5 cut(s) 443, 475, 697, 736, 871
BstMAI GTCTC 5 cut(s) 340, 514, 624, 744, 892
BstMBI GATC 5 cut(s) 440, 472, 694, 733, 868
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 7 cut(s) 69, 162, 171, 201, 237, 246, 351
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 305, 374, 509
BstSFI CTRYAG 2 cut(s) 127, 495
BstSNI TACGTA 1 cut(s) 846
BstUI CGCG 2 cut(s) 174, 917
BstV1I GCAGC 3 cut(s) 56, 300, 943
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BstZI CGGCCG 1 cut(s) 321
BsuRI GGCC 4 cut(s) 170, 225, 323, 509
BtsCI GGATG 1 cut(s) 568
BtsI GCAGTG 3 cut(s) 22, 226, 733
BtsIMutI CAGTG 5 cut(s) 22, 226, 251, 733, 950
BtuMI TCGCGA 1 cut(s) 917
Cac8I GCNNGC 3 cut(s) 172, 251, 372
CaiI CAGNNNCTG 2 cut(s) 270, 742
CciNI GCGGCCGC 1 cut(s) 321
CfoI GCGC 2 cut(s) 293, 347
Cfr13I GGNCC 2 cut(s) 169, 303
CseI GACGC 1 cut(s) 163
Csp6I GTAC 3 cut(s) 283, 408, 712
CviQI GTAC 3 cut(s) 283, 408, 712
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 442, 474, 696, 735, 870
DpnII GATC 5 cut(s) 440, 472, 694, 733, 868
DriI GACNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 2 cut(s) 223, 321
EagI CGGCCG 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 546
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 546
EciI GGCGGA 1 cut(s) 437
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 321
Eco105I TACGTA 1 cut(s) 846
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 2 cut(s) 340, 892
Eco47I GGWCC 1 cut(s) 303
Eco52I CGGCCG 1 cut(s) 321
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 2 cut(s) 36, 935
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 192
FaqI GGGAC 1 cut(s) 281
FauI CCCGC 1 cut(s) 179
FbaI TGATCA 2 cut(s) 733, 868
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 8 cut(s) 70, 241, 254, 289, 294, 321, 324, 932
FokI GGATG 1 cut(s) 575
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 8 cut(s) 70, 241, 254, 289, 294, 321, 324, 932
FspBI CTAG 2 cut(s) 371, 444
GlaI GCGC 2 cut(s) 292, 346
GluI GCNGC 8 cut(s) 70, 241, 254, 289, 294, 321, 324, 932
GsaI CCCAGC 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 4 cut(s) 170, 225, 323, 509
HapII CCGG 3 cut(s) 222, 306, 510
HgaI GACGC 1 cut(s) 163
HhaI GCGC 2 cut(s) 293, 347
Hin6I GCGC 2 cut(s) 291, 345
HinP1I GCGC 2 cut(s) 291, 345
HincII GTYRAC 6 cut(s) 85, 747, 772, 801, 826, 882
HindII GTYRAC 6 cut(s) 85, 747, 772, 801, 826, 882
HindIII AAGCTT 2 cut(s) 113, 689
HpaII CCGG 3 cut(s) 222, 306, 510
Hpy166II GTNNAC 8 cut(s) 85, 262, 747, 772, 801, 826, 843, 882
Hpy188I TCNGA 5 cut(s) 80, 120, 280, 364, 616
Hpy188III TCNNGA 2 cut(s) 38, 916
Hpy8I GTNNAC 8 cut(s) 85, 262, 747, 772, 801, 826, 843, 882
Hpy99I CGWCG 6 cut(s) 10, 13, 179, 220, 316, 332
HpyAV CCTTC 2 cut(s) 571, 575
HpyCH4III ACNGT 2 cut(s) 627, 653
HpyCH4IV ACGT 2 cut(s) 396, 845
HpyCH4V TGCA 5 cut(s) 156, 249, 648, 686, 931
HpyF10VI GCNNNNNNNGC 7 cut(s) 69, 162, 171, 201, 237, 246, 351
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 2 cut(s) 396, 845
HspAI GCGC 2 cut(s) 291, 345
Ksp22I TGATCA 2 cut(s) 733, 868
Kzo9I GATC 5 cut(s) 440, 472, 694, 733, 868
LmnI GCTCC 3 cut(s) 200, 723, 762
Lsp1109I GCAGC 3 cut(s) 56, 300, 943
LweI GCATC 1 cut(s) 918
MaeI CTAG 2 cut(s) 371, 444
MaeII ACGT 2 cut(s) 396, 845
MalI GATC 5 cut(s) 442, 474, 696, 735, 870
MboI GATC 5 cut(s) 440, 472, 694, 733, 868
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 2 cut(s) 478, 675
MlyI GAGTC 6 cut(s) 28, 90, 206, 267, 374, 626
MmeI TCCRAC 1 cut(s) 342
MseI TTAA 1 cut(s) 780
MspI CCGG 3 cut(s) 222, 306, 510
MspR9I CCNGG 3 cut(s) 307, 376, 511
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 2 cut(s) 174, 917
MwoI GCNNNNNNNGC 7 cut(s) 69, 162, 171, 201, 237, 246, 351
NciI CCSGG 2 cut(s) 307, 511
NdeII GATC 5 cut(s) 440, 472, 694, 733, 868
NheI GCTAGC 1 cut(s) 370
NotI GCGGCCGC 1 cut(s) 321
NruI TCGCGA 1 cut(s) 917
PaeR7I CTCGAG 1 cut(s) 935
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 688
PfeI GAWTC 6 cut(s) 121, 141, 179, 275, 488, 611
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 8 cut(s) 71, 242, 255, 290, 295, 322, 325, 933
PleI GAGTC 6 cut(s) 28, 89, 206, 266, 373, 625
PpsI GAGTC 6 cut(s) 28, 89, 206, 266, 373, 625
Ppu21I YACGTR 1 cut(s) 846
PsiI TTATAA 1 cut(s) 633
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 374
PspFI CCCAGC 1 cut(s) 354
PspGI CCWGG 1 cut(s) 374
PspPI GGNCC 2 cut(s) 169, 303
PspXI VCTCGAGB 1 cut(s) 935
PstNI CAGNNNCTG 2 cut(s) 270, 742
PsuI RGATCY 1 cut(s) 440
PsyI GACNNNGTC 1 cut(s) 332
RruI TCGCGA 1 cut(s) 917
RsaI GTAC 3 cut(s) 284, 409, 713
RsaNI GTAC 3 cut(s) 283, 408, 712
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 780
SatI GCNGC 8 cut(s) 70, 241, 254, 289, 294, 321, 324, 932
Sau3AI GATC 5 cut(s) 440, 472, 694, 733, 868
Sau96I GGNCC 2 cut(s) 169, 303
SchI GAGTC 6 cut(s) 28, 90, 206, 267, 374, 626
ScrFI CCNGG 3 cut(s) 307, 376, 511
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 1 cut(s) 918
SfcI CTRYAG 2 cut(s) 127, 495
Sfr274I CTCGAG 1 cut(s) 935
SinI GGWCC 1 cut(s) 303
SlaI CTCGAG 1 cut(s) 935
SmlI CTYRAG 2 cut(s) 517, 935
SmoI CTYRAG 2 cut(s) 517, 935
SnaBI TACGTA 1 cut(s) 846
Sse9I AATT 2 cut(s) 478, 675
SsiI CCGC 8 cut(s) 172, 241, 253, 286, 294, 320, 324, 422
SspMI CTAG 2 cut(s) 371, 444
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 305, 374, 509
TaaI ACNGT 2 cut(s) 627, 653
TaiI ACGT 2 cut(s) 399, 848
TaqI TCGA 6 cut(s) 84, 177, 482, 609, 672, 936
TasI AATT 2 cut(s) 478, 675
TatI WGTACW 1 cut(s) 711
TauI GCSGC 5 cut(s) 243, 256, 296, 323, 326
TfiI GAWTC 6 cut(s) 121, 141, 179, 275, 488, 611
Tru1I TTAA 1 cut(s) 780
Tru9I TTAA 1 cut(s) 780
TscAI CASTG 5 cut(s) 22, 233, 251, 733, 950
TseI GCWGC 3 cut(s) 69, 288, 931
TspDTI ATGAA 1 cut(s) 480
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 5 cut(s) 22, 233, 251, 733, 950
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 303
XapI RAATTY 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 935
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 2 cut(s) 371, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.