Rw3G000980

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002273
Physical Location & Seq
Reverse (-)
796116 .. 799550
3435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000980.1

Sequence Viewer

Length: 1596 bp
ATGGGTTTAGGCACCTGTGGCCTTTATGTCCCTTTTGGAAAGAAAAAGACCAGTGTAGGTCATGAGCATTTGAGCCCCAATCCTCGGAAATATGTTTCTGATAGTTTTGAGTCTTCTCCTTCTCATTCAAATACTAATATGTTGTGTTCTGAATCCCCAAGTGACAGAAATTTGGTCACTGAGAAGGAGTTTTGTCATCGAAGAAGTTCTTCAGTAGGTAACATACATAAACCCCCTCGAAATATTTTGACCTCGGGGAGGTCATCTGATGCAAGTCAAGCTGTAAAGTGGGCAAGTCAAGCTGACAGAGATTTGGTCACCGAGAAGAAGTTTCATCACCAAAGAAGTTTTTCACAAGGTAACTGTTATGAAAACCCTCAAAATAATTTAGTCCCGAGAAGGGCATCTGATGCAAATCAAGCTGCGAAGCAGTGTTTAAGTTCTACCAGATGTCAGTATTACGGCCATGGAAATATCATAAAGGGGTTAAATAGCGTAACAAAACCCCAAGACCCTGAAAGTGTGGAAGAGATCAACAATTTGGGCAACATGAAATATAGAAATGGGTACTTTAAGGAGGCAATATCCTTATATGATAAGGCCATTGCCTTGTGCCCTCAAAATGCTGCTTTCCATTCCAATAAGGCTGCAGCATTTATCAGCCTTGGTAGATTAACTGAAGCTGTGGAAGAGTGCCTAAAGGCAATCAAATGTGAACCATCGTGTTCTCGTGCCCATTATAGGCTTGGAACTCTTTATACTAGGTTTGGTCAAGTTGATAATGCAAGTTGGCATTTCGAGTTATCTGGGAAGAATATTGGCTCAGAAATTAGGCAGCGTCTATCACGTATTGAAGCTCACTACGTAAATACTAACAAGGCCAGGAAGGTTAAAGATTGGGATGGGGTTTTGAGAGAAAGCACTTTATGTATTGAAGCTGGAGTAGATGCATCAAACCAGTTGGTTGCTTTAAAAGCTGAGGCTCTATTTAAGCTTCGAAGGGTAGATGAAGCTTTTGAATTAGTAAATGCTGCAAGTCATTCAGAAGAAAGTAGAGTCACAAAACCTTGCAAGGGGACAGCATGCTTGCTGATAATTGAAACTAAACTCAATTTGTATCTTGGAAGGTTTGAGAAAGGAGTTAAGTCTGCAGAAAGAGCTGTGGACATGGATTCAACCCGGAAGTCTTTAAAGTGGCTGAAGAAAGCTAGGGGTGCCGCAGATGCCAGGAAATGTGGAAATTCTTTCTACAAGGATCAAAAATACTTGGAGGCATGCACAATGTTTGGCCATGGTCTGCAGTATGTTCCTACAAACAATGTCTTACTTTGTGATCGAGCTGCTTGCAGGTCTAAGCTTGGACAGTGGGAAATGGCCATTGAAGATTGCAATGCAGCTCTAAGAGAACGGCCTAATTTCCACAAAGCTCTTCTATGGCGCGCTCACTCTTATGCTAAACTTAGAAGATGGGAGGATTCTTTAAAGGACTATTCTGCATTGAGCAAGGAGTTTCCTGGAGATGAATTTATTGCCAGTTCTCTTGATCAAGTACAAATGGAATTGAAGGCTCAAACTGCAGATAGAAGCCTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

531

Amino Acids

59.59

Weight (kDa)

9.15

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_11 PF13414 182 - 223 2e-07 TPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1338
AccB1I GGYRCC 2 cut(s) 11, 1214
AccII CGCG 1 cut(s) 1440
AciI CCGC 1 cut(s) 1218
AclWI GGATC 1 cut(s) 1263
AcoI YGGCCR 3 cut(s) 463, 1288, 1374
AcsI RAATTY 3 cut(s) 169, 1240, 1523
AcuI CTGAAG 3 cut(s) 195, 699, 1220
AfaI GTAC 2 cut(s) 569, 1551
AfiI CCNNNNNNNGG 5 cut(s) 84, 258, 400, 741, 1073
AgsI TTSAA 8 cut(s) 129, 854, 935, 1019, 1100, 1176, 1382, 1564
AjnI CCWGG 3 cut(s) 881, 1226, 1513
AlwI GGATC 1 cut(s) 1263
Ama87I CYCGRG 2 cut(s) 253, 394
AoxI GGCC 7 cut(s) 19, 463, 600, 879, 1288, 1374, 1409
ApeKI GCWGC 8 cut(s) 422, 626, 647, 650, 835, 1031, 1340, 1394
ApoI RAATTY 3 cut(s) 169, 1240, 1523
Asp700I GAANNNNTTC 3 cut(s) 205, 208, 349
AspLEI GCGC 2 cut(s) 1440, 1442
AsuC2I CCSGG 1 cut(s) 1180
AsuHPI GGTGA 2 cut(s) 310, 329
AsuII TTCGAA 1 cut(s) 997
AvaI CYCGRG 2 cut(s) 253, 394
BaeGI GKGCMC 2 cut(s) 617, 736
BalI TGGCCA 2 cut(s) 1290, 1376
BanI GGYRCC 2 cut(s) 11, 1214
BanII GRGCYC 1 cut(s) 77
BauI CACGAG 1 cut(s) 729
BbsI GAAGAC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 978
BbvI GCAGC 8 cut(s) 409, 613, 634, 662, 847, 1018, 1327, 1406
BccI CCATC 3 cut(s) 727, 896, 1461
BceAI ACGGC 2 cut(s) 478, 1424
BcgI CGANNNNNNTGC 2 cut(s) 1326, 1360
BciT130I CCWGG 3 cut(s) 883, 1228, 1515
BclI TGATCA 1 cut(s) 1543
BcnI CCSGG 1 cut(s) 1180
BfaI CTAG 2 cut(s) 762, 1209
BfmI CTRYAG 4 cut(s) 648, 1149, 1298, 1575
BfuAI ACCTGC 1 cut(s) 1338
BisI GCNGC 9 cut(s) 423, 627, 648, 651, 836, 1032, 1218, 1341, 1395
BlsI GCNGC 9 cut(s) 424, 628, 649, 652, 837, 1033, 1219, 1342, 1396
Bme1390I CCNGG 4 cut(s) 883, 1180, 1228, 1515
BmeT110I CYCGRG 2 cut(s) 253, 394
BmiI GGNNCC 2 cut(s) 13, 1216
BmrFI CCNGG 4 cut(s) 883, 1180, 1228, 1515
BmsI GCATC 6 cut(s) 259, 400, 413, 937, 959, 1213
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 2 cut(s) 960, 1536
Bpu10I CCTNAGC 1 cut(s) 978
Bpu14I TTCGAA 1 cut(s) 997
BpuMI CCSGG 1 cut(s) 1180
BsaAI YACGTR 2 cut(s) 848, 865
BsaBI GATNNNNATC 1 cut(s) 414
BsaJI CCNNGG 5 cut(s) 83, 252, 466, 664, 1291
Bsc4I CCNNNNNNNGG 5 cut(s) 84, 258, 400, 741, 1073
Bse1I ACTGG 3 cut(s) 51, 958, 1533
Bse3DI GCAATG 2 cut(s) 603, 1396
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 3 cut(s) 883, 1228, 1515
BseDI CCNNGG 5 cut(s) 83, 252, 466, 664, 1291
BseGI GGATG 1 cut(s) 907
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 5 cut(s) 84, 258, 400, 741, 1073
BseMI GCAATG 2 cut(s) 603, 1396
BseMII CTCAG 3 cut(s) 171, 837, 969
BseNI ACTGG 3 cut(s) 51, 958, 1533
BsePI GCGCGC 1 cut(s) 1438
BseSI GKGCMC 2 cut(s) 617, 736
BseXI GCAGC 8 cut(s) 409, 613, 634, 662, 847, 1018, 1327, 1406
Bsh1236I CGCG 1 cut(s) 1440
BshFI GGCC 7 cut(s) 21, 465, 602, 881, 1290, 1376, 1411
BshNI GGYRCC 2 cut(s) 11, 1214
BsiHKCI CYCGRG 2 cut(s) 253, 394
BsiSI CCGG 1 cut(s) 1180
BslFI GGGAC 3 cut(s) 14, 377, 1090
BslI CCNNNNNNNGG 5 cut(s) 84, 258, 400, 741, 1073
BsmFI GGGAC 3 cut(s) 14, 377, 1090
BsnI GGCC 7 cut(s) 21, 465, 602, 881, 1290, 1376, 1411
BsoBI CYCGRG 2 cut(s) 253, 394
Bsp119I TTCGAA 1 cut(s) 997
Bsp1286I GDGCHC 3 cut(s) 77, 617, 736
Bsp143I GATC 4 cut(s) 531, 1255, 1333, 1543
Bsp19I CCATGG 2 cut(s) 466, 1291
BspACI CCGC 1 cut(s) 1218
BspANI GGCC 7 cut(s) 21, 465, 602, 881, 1290, 1376, 1411
BspCNI CTCAG 3 cut(s) 172, 836, 970
BspFNI CGCG 1 cut(s) 1440
BspHI TCATGA 2 cut(s) 61, 1592
BspLI GGNNCC 2 cut(s) 13, 1216
BspMAI CTGCAG 4 cut(s) 652, 1153, 1302, 1579
BspMI ACCTGC 1 cut(s) 1338
BspPI GGATC 1 cut(s) 1263
BspQI GCTCTTC 1 cut(s) 1434
BspT104I TTCGAA 1 cut(s) 997
BspT107I GGYRCC 2 cut(s) 11, 1214
BsrDI GCAATG 2 cut(s) 603, 1396
BsrI ACTGG 3 cut(s) 51, 958, 1533
BssECI CCNNGG 5 cut(s) 83, 252, 466, 664, 1291
BssHII GCGCGC 1 cut(s) 1438
BssMI GATC 4 cut(s) 531, 1255, 1333, 1543
BssSI CACGAG 1 cut(s) 729
BssT1I CCWWGG 3 cut(s) 466, 664, 1291
Bst2BI CACGAG 1 cut(s) 729
Bst2UI CCWGG 3 cut(s) 883, 1228, 1515
Bst4CI ACNGT 2 cut(s) 365, 1365
Bst6I CTCTTC 3 cut(s) 522, 684, 1434
BstAPI GCANNNNNTGC 1 cut(s) 410
BstBAI YACGTR 2 cut(s) 848, 865
BstBI TTCGAA 1 cut(s) 997
BstC8I GCNNGC 5 cut(s) 1084, 1088, 1276, 1345, 1440
BstDEI CTNAG 6 cut(s) 180, 823, 978, 1353, 1400, 1460
BstDSI CCRYGG 2 cut(s) 466, 1291
BstEII GGTNACC 1 cut(s) 316
BstENI CCTNNNNNAGG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 907
BstFNI CGCG 1 cut(s) 1440
BstHHI GCGC 2 cut(s) 1440, 1442
BstKTI GATC 4 cut(s) 534, 1258, 1336, 1546
BstMBI GATC 4 cut(s) 531, 1255, 1333, 1543
BstNI CCWGG 3 cut(s) 883, 1228, 1515
BstNSI RCATGY 2 cut(s) 1086, 1278
BstPI GGTNACC 1 cut(s) 316
BstSCI CCNGG 4 cut(s) 881, 1178, 1226, 1513
BstSFI CTRYAG 4 cut(s) 648, 1149, 1298, 1575
BstSLI GKGCMC 2 cut(s) 617, 736
BstSNI TACGTA 1 cut(s) 865
BstUI CGCG 1 cut(s) 1440
BstV1I GCAGC 8 cut(s) 409, 613, 634, 662, 847, 1018, 1327, 1406
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 7 cut(s) 21, 465, 602, 881, 1290, 1376, 1411
BtgI CCRYGG 2 cut(s) 466, 1291
BtsCI GGATG 1 cut(s) 907
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 4 cut(s) 58, 177, 437, 1370
BveI ACCTGC 1 cut(s) 1338
Cac8I GCNNGC 5 cut(s) 1084, 1088, 1276, 1345, 1440
CciI TCATGA 2 cut(s) 61, 1592
CfoI GCGC 2 cut(s) 1440, 1442
CseI GACGC 1 cut(s) 827
Csp6I GTAC 2 cut(s) 568, 1550
CviAII CATG 8 cut(s) 62, 467, 550, 1083, 1168, 1275, 1292, 1593
CviQI GTAC 2 cut(s) 568, 1550
DdeI CTNAG 6 cut(s) 180, 823, 978, 1353, 1400, 1460
DpnI GATC 4 cut(s) 533, 1257, 1335, 1545
DpnII GATC 4 cut(s) 531, 1255, 1333, 1543
DraI TTTAAA 3 cut(s) 972, 1191, 1482
EaeI YGGCCR 3 cut(s) 463, 1288, 1374
Eam1104I CTCTTC 3 cut(s) 522, 684, 1434
EarI CTCTTC 3 cut(s) 522, 684, 1434
Eco105I TACGTA 1 cut(s) 865
Eco130I CCWWGG 3 cut(s) 466, 664, 1291
Eco24I GRGCYC 1 cut(s) 77
Eco57I CTGAAG 3 cut(s) 195, 699, 1220
Eco88I CYCGRG 2 cut(s) 253, 394
Eco91I GGTNACC 1 cut(s) 316
EcoNI CCTNNNNNAGG 1 cut(s) 256
EcoO65I GGTNACC 1 cut(s) 316
EcoRII CCWGG 3 cut(s) 881, 1226, 1513
EcoT14I CCWWGG 3 cut(s) 466, 664, 1291
EcoT22I ATGCAT 1 cut(s) 952
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 3 cut(s) 466, 664, 1291
FaeI CATG 8 cut(s) 65, 470, 553, 1086, 1171, 1278, 1295, 1596
FalI AAGNNNNNCTT 2 cut(s) 193, 225
FaqI GGGAC 3 cut(s) 14, 377, 1090
FatI CATG 8 cut(s) 61, 466, 549, 1082, 1167, 1274, 1291, 1592
FbaI TGATCA 1 cut(s) 1543
Fnu4HI GCNGC 9 cut(s) 423, 627, 648, 651, 836, 1032, 1218, 1341, 1395
FokI GGATG 1 cut(s) 914
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 9 cut(s) 423, 627, 648, 651, 836, 1032, 1218, 1341, 1395
FspBI CTAG 2 cut(s) 762, 1209
GlaI GCGC 2 cut(s) 1439, 1441
GluI GCNGC 9 cut(s) 423, 627, 648, 651, 836, 1032, 1218, 1341, 1395
GsuI CTGGAG 2 cut(s) 960, 1536
HaeIII GGCC 7 cut(s) 21, 465, 602, 881, 1290, 1376, 1411
HapII CCGG 1 cut(s) 1180
HgaI GACGC 1 cut(s) 827
HhaI GCGC 2 cut(s) 1440, 1442
Hin1II CATG 8 cut(s) 65, 470, 553, 1086, 1171, 1278, 1295, 1596
Hin6I GCGC 2 cut(s) 1438, 1440
HinP1I GCGC 2 cut(s) 1438, 1440
HindIII AAGCTT 3 cut(s) 992, 1011, 1355
HinfI GANTC 5 cut(s) 110, 152, 1056, 1172, 1475
HpaII CCGG 1 cut(s) 1180
HphI GGTGA 2 cut(s) 310, 329
Hpy166II GTNNAC 2 cut(s) 716, 1165
Hpy188I TCNGA 7 cut(s) 87, 100, 151, 268, 409, 826, 1045
Hpy188III TCNNGA 4 cut(s) 62, 394, 1541, 1593
Hpy8I GTNNAC 2 cut(s) 716, 1165
HpyAV CCTTC 7 cut(s) 129, 178, 393, 880, 993, 1119, 1558
HpyCH4III ACNGT 2 cut(s) 365, 1365
HpyCH4IV ACGT 2 cut(s) 847, 864
HpyF3I CTNAG 6 cut(s) 180, 823, 978, 1353, 1400, 1460
HpySE526I ACGT 2 cut(s) 847, 864
Hsp92II CATG 8 cut(s) 65, 470, 553, 1086, 1171, 1278, 1295, 1596
HspAI GCGC 2 cut(s) 1438, 1440
Ksp22I TGATCA 1 cut(s) 1543
Kzo9I GATC 4 cut(s) 531, 1255, 1333, 1543
LguI GCTCTTC 1 cut(s) 1434
Lsp1109I GCAGC 8 cut(s) 409, 613, 634, 662, 847, 1018, 1327, 1406
LweI GCATC 6 cut(s) 259, 400, 413, 937, 959, 1213
MaeI CTAG 2 cut(s) 762, 1209
MaeII ACGT 2 cut(s) 847, 864
MaeIII GTNAC 7 cut(s) 161, 175, 218, 316, 359, 496, 1057
MalI GATC 4 cut(s) 533, 1257, 1335, 1545
MboI GATC 4 cut(s) 531, 1255, 1333, 1543
MhlI GDGCHC 3 cut(s) 77, 617, 736
MlsI TGGCCA 2 cut(s) 1290, 1376
MluNI TGGCCA 2 cut(s) 1290, 1376
MlyI GAGTC 2 cut(s) 119, 1065
Mox20I TGGCCA 2 cut(s) 1290, 1376
Mph1103I ATGCAT 1 cut(s) 952
MroXI GAANNNNTTC 3 cut(s) 205, 208, 349
MscI TGGCCA 2 cut(s) 1290, 1376
MslI CAYNNNNRTG 1 cut(s) 1449
Msp20I TGGCCA 2 cut(s) 1290, 1376
MspI CCGG 1 cut(s) 1180
MspR9I CCNGG 4 cut(s) 883, 1180, 1228, 1515
MvaI CCWGG 3 cut(s) 883, 1228, 1515
MvnI CGCG 1 cut(s) 1440
NciI CCSGG 1 cut(s) 1180
NcoI CCATGG 2 cut(s) 466, 1291
NdeII GATC 4 cut(s) 531, 1255, 1333, 1543
NlaIII CATG 8 cut(s) 65, 470, 553, 1086, 1171, 1278, 1295, 1596
NlaIV GGNNCC 2 cut(s) 13, 1216
NmuCI GTSAC 4 cut(s) 161, 175, 316, 1057
NsiI ATGCAT 1 cut(s) 952
NspI RCATGY 2 cut(s) 1086, 1278
NspV TTCGAA 1 cut(s) 997
PaeI GCATGC 2 cut(s) 1086, 1278
PagI TCATGA 2 cut(s) 61, 1592
PauI GCGCGC 1 cut(s) 1438
PciSI GCTCTTC 1 cut(s) 1434
PdmI GAANNNNTTC 3 cut(s) 205, 208, 349
PfeI GAWTC 3 cut(s) 152, 1172, 1475
PfoI TCCNGGA 1 cut(s) 1513
PkrI GCNGC 9 cut(s) 424, 628, 649, 652, 837, 1033, 1219, 1342, 1396
PleI GAGTC 2 cut(s) 118, 1064
PpsI GAGTC 2 cut(s) 118, 1064
Ppu21I YACGTR 2 cut(s) 848, 865
Psp6I CCWGG 3 cut(s) 881, 1226, 1513
PspEI GGTNACC 1 cut(s) 316
PspGI CCWGG 3 cut(s) 881, 1226, 1513
PspN4I GGNNCC 2 cut(s) 13, 1216
PsrI GAACNNNNNNTAC 2 cut(s) 742, 774
PstI CTGCAG 4 cut(s) 652, 1153, 1302, 1579
PteI GCGCGC 1 cut(s) 1438
RsaI GTAC 2 cut(s) 569, 1551
RsaNI GTAC 2 cut(s) 568, 1550
RseI CAYNNNNRTG 1 cut(s) 1449
SapI GCTCTTC 1 cut(s) 1434
SatI GCNGC 9 cut(s) 423, 627, 648, 651, 836, 1032, 1218, 1341, 1395
Sau3AI GATC 4 cut(s) 531, 1255, 1333, 1543
SchI GAGTC 2 cut(s) 119, 1065
ScrFI CCNGG 4 cut(s) 883, 1180, 1228, 1515
SduI GDGCHC 3 cut(s) 77, 617, 736
SfaNI GCATC 6 cut(s) 259, 400, 413, 937, 959, 1213
SfcI CTRYAG 4 cut(s) 648, 1149, 1298, 1575
SfuI TTCGAA 1 cut(s) 997
SmiMI CAYNNNNRTG 1 cut(s) 1449
SnaBI TACGTA 1 cut(s) 865
SphI GCATGC 2 cut(s) 1086, 1278
SsiI CCGC 1 cut(s) 1218
SspI AATATT 2 cut(s) 244, 817
SspMI CTAG 2 cut(s) 762, 1209
StyD4I CCNGG 4 cut(s) 881, 1178, 1226, 1513
StyI CCWWGG 3 cut(s) 466, 664, 1291
TaaI ACNGT 2 cut(s) 365, 1365
TaiI ACGT 2 cut(s) 850, 867
TaqI TCGA 5 cut(s) 199, 238, 798, 997, 1336
TatI WGTACW 1 cut(s) 1549
TauI GCSGC 1 cut(s) 1220
TfiI GAWTC 3 cut(s) 152, 1172, 1475
TscAI CASTG 4 cut(s) 58, 184, 437, 1370
TseFI GTSAC 4 cut(s) 161, 175, 316, 1057
TseI GCWGC 8 cut(s) 422, 626, 647, 650, 835, 1031, 1340, 1394
Tsp45I GTSAC 4 cut(s) 161, 175, 316, 1057
TspDTI ATGAA 5 cut(s) 323, 384, 566, 1023, 1536
TspRI CASTG 4 cut(s) 58, 184, 437, 1370
XagI CCTNNNNNAGG 1 cut(s) 256
XapI RAATTY 3 cut(s) 169, 1240, 1523
XceI RCATGY 2 cut(s) 1086, 1278
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XmnI GAANNNNTTC 3 cut(s) 205, 208, 349
XspI CTAG 2 cut(s) 762, 1209
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.