Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g01062 |
| malus_domestica | MD04G1236600.v1.1 MD12G1255900.v1.1 |
| prunus_persica | Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1 |
| pyrus_communis | pycom04g21050 pycom12g23450 |
| rosa_chinensis | RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601 |
| rosa_laevigata | RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435 |
| rosa_multiflora | Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00426870 Rroxscaffold_6G00426890 |
| rosa_rugosa | Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100 |
| rosa_samantha | Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300 |
| rosa_wichuraiana | Rw0G019910 Rw3G000980 Rw3G000990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 56 |
| AcuI | CTGAAG | 1 cut(s) | 219 |
| AluBI | AGCT | 2 cut(s) | 110, 259 |
| AluI | AGCT | 2 cut(s) | 110, 259 |
| ApeKI | GCWGC | 1 cut(s) | 259 |
| ApoI | RAATTY | 1 cut(s) | 56 |
| AspS9I | GGNCC | 1 cut(s) | 103 |
| AvaII | GGWCC | 1 cut(s) | 103 |
| BanII | GRGCYC | 1 cut(s) | 75 |
| BbsI | GAAGAC | 1 cut(s) | 73 |
| BbvI | GCAGC | 1 cut(s) | 246 |
| BisI | GCNGC | 1 cut(s) | 260 |
| BlsI | GCNGC | 1 cut(s) | 261 |
| Bme18I | GGWCC | 1 cut(s) | 103 |
| BmgT120I | GGNCC | 1 cut(s) | 103 |
| BmiI | GGNNCC | 1 cut(s) | 281 |
| BmsI | GCATC | 1 cut(s) | 47 |
| BpiI | GAAGAC | 1 cut(s) | 73 |
| Bpu10I | CCTNAGC | 1 cut(s) | 222 |
| Bsa29I | ATCGAT | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 1 cut(s) | 117 |
| Bse1I | ACTGG | 1 cut(s) | 92 |
| BseCI | ATCGAT | 1 cut(s) | 168 |
| BseDI | CCNNGG | 1 cut(s) | 117 |
| BseGI | GGATG | 1 cut(s) | 38 |
| BseNI | ACTGG | 1 cut(s) | 92 |
| BseRI | GAGGAG | 1 cut(s) | 27 |
| BseXI | GCAGC | 1 cut(s) | 246 |
| BshVI | ATCGAT | 1 cut(s) | 168 |
| BslFI | GGGAC | 1 cut(s) | 281 |
| BsmFI | GGGAC | 1 cut(s) | 281 |
| Bsp1286I | GDGCHC | 1 cut(s) | 75 |
| Bsp143I | GATC | 1 cut(s) | 43 |
| BspDI | ATCGAT | 1 cut(s) | 168 |
| BspLI | GGNNCC | 1 cut(s) | 281 |
| BspQI | GCTCTTC | 1 cut(s) | 80 |
| BsrI | ACTGG | 1 cut(s) | 92 |
| BssECI | CCNNGG | 1 cut(s) | 117 |
| BssMI | GATC | 1 cut(s) | 43 |
| BssT1I | CCWWGG | 1 cut(s) | 117 |
| Bst6I | CTCTTC | 2 cut(s) | 80, 168 |
| BstDEI | CTNAG | 2 cut(s) | 222, 275 |
| BstF5I | GGATG | 1 cut(s) | 38 |
| BstKTI | GATC | 1 cut(s) | 46 |
| BstMBI | GATC | 1 cut(s) | 43 |
| BstV1I | GCAGC | 1 cut(s) | 246 |
| BstV2I | GAAGAC | 1 cut(s) | 73 |
| Bsu15I | ATCGAT | 1 cut(s) | 168 |
| BsuTUI | ATCGAT | 1 cut(s) | 168 |
| BtsCI | GGATG | 1 cut(s) | 38 |
| BtsIMutI | CAGTG | 1 cut(s) | 292 |
| Cfr13I | GGNCC | 1 cut(s) | 103 |
| ClaI | ATCGAT | 1 cut(s) | 168 |
| CviAII | CATG | 1 cut(s) | 68 |
| CviJI | RGCY | 3 cut(s) | 73, 110, 259 |
| CviKI_1 | RGCY | 3 cut(s) | 73, 110, 259 |
| DdeI | CTNAG | 2 cut(s) | 222, 275 |
| DpnI | GATC | 1 cut(s) | 45 |
| DpnII | GATC | 1 cut(s) | 43 |
| Eam1104I | CTCTTC | 2 cut(s) | 80, 168 |
| EarI | CTCTTC | 2 cut(s) | 80, 168 |
| Eco130I | CCWWGG | 1 cut(s) | 117 |
| Eco24I | GRGCYC | 1 cut(s) | 75 |
| Eco47I | GGWCC | 1 cut(s) | 103 |
| Eco57I | CTGAAG | 1 cut(s) | 219 |
| EcoT14I | CCWWGG | 1 cut(s) | 117 |
| EcoT38I | GRGCYC | 1 cut(s) | 75 |
| ErhI | CCWWGG | 1 cut(s) | 117 |
| FaeI | CATG | 1 cut(s) | 71 |
| FaiI | YATR | 4 cut(s) | 69, 94, 206, 239 |
| FaqI | GGGAC | 1 cut(s) | 281 |
| FatI | CATG | 1 cut(s) | 67 |
| Fnu4HI | GCNGC | 1 cut(s) | 260 |
| FokI | GGATG | 1 cut(s) | 25 |
| FriOI | GRGCYC | 1 cut(s) | 75 |
| Fsp4HI | GCNGC | 1 cut(s) | 260 |
| GluI | GCNGC | 1 cut(s) | 260 |
| Hin1II | CATG | 1 cut(s) | 71 |
| HinfI | GANTC | 2 cut(s) | 215, 289 |
| Hpy188I | TCNGA | 5 cut(s) | 11, 43, 48, 163, 199 |
| Hpy188III | TCNNGA | 1 cut(s) | 253 |
| HpyCH4V | TGCA | 2 cut(s) | 67, 262 |
| HpyF3I | CTNAG | 2 cut(s) | 222, 275 |
| Hsp92II | CATG | 1 cut(s) | 71 |
| Kzo9I | GATC | 1 cut(s) | 43 |
| LguI | GCTCTTC | 1 cut(s) | 80 |
| LpnPI | CCDG | 1 cut(s) | 73 |
| Lsp1109I | GCAGC | 1 cut(s) | 246 |
| LweI | GCATC | 1 cut(s) | 47 |
| MalI | GATC | 1 cut(s) | 45 |
| MboI | GATC | 1 cut(s) | 43 |
| MboII | GAAGA | 6 cut(s) | 32, 44, 67, 73, 185, 212 |
| MhlI | GDGCHC | 1 cut(s) | 75 |
| MluCI | AATT | 2 cut(s) | 56, 98 |
| MlyI | GAGTC | 1 cut(s) | 224 |
| MnlI | CCTC | 3 cut(s) | 5, 10, 169 |
| NdeII | GATC | 1 cut(s) | 43 |
| NlaIII | CATG | 1 cut(s) | 71 |
| NlaIV | GGNNCC | 1 cut(s) | 281 |
| PciSI | GCTCTTC | 1 cut(s) | 80 |
| PfeI | GAWTC | 1 cut(s) | 289 |
| PkrI | GCNGC | 1 cut(s) | 261 |
| PleI | GAGTC | 1 cut(s) | 223 |
| PpsI | GAGTC | 1 cut(s) | 223 |
| PspN4I | GGNNCC | 1 cut(s) | 281 |
| PspPI | GGNCC | 1 cut(s) | 103 |
| SapI | GCTCTTC | 1 cut(s) | 80 |
| SatI | GCNGC | 1 cut(s) | 260 |
| Sau3AI | GATC | 1 cut(s) | 43 |
| Sau96I | GGNCC | 1 cut(s) | 103 |
| SchI | GAGTC | 1 cut(s) | 224 |
| SduI | GDGCHC | 1 cut(s) | 75 |
| SetI | ASST | 7 cut(s) | 112, 123, 159, 180, 252, 261, 285 |
| SfaNI | GCATC | 1 cut(s) | 47 |
| SgeI | CNNG | 5 cut(s) | 80, 100, 119, 130, 265 |
| SinI | GGWCC | 1 cut(s) | 103 |
| Sse9I | AATT | 2 cut(s) | 56, 98 |
| StyI | CCWWGG | 1 cut(s) | 117 |
| TaqI | TCGA | 2 cut(s) | 84, 168 |
| TasI | AATT | 2 cut(s) | 56, 98 |
| TfiI | GAWTC | 1 cut(s) | 289 |
| TseI | GCWGC | 1 cut(s) | 259 |
| TspDTI | ATGAA | 3 cut(s) | 17, 186, 206 |
| VpaK11BI | GGWCC | 1 cut(s) | 103 |
| XapI | RAATTY | 1 cut(s) | 56 |