Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Reverse (-)

28716349 .. 28716987

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018358

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAGAGTCGACCTCGCCAAATCCTCCAAGAACAACAAGCTTCAGATACTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCCACCGAGCTCTGCTCCTACTGCTTCAACGACTCGTCGTTCGACCACTGCTTCTCTTGCCGCCAGTACAAGCGGCGAGTCCACCGGGATTGCGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCGGGTCGTTGTCTGCTGCCGCCGACCAGAGTAATGCAATCAAAACAAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.49

Weight (kDa)

8.83

Isoelectric Point (pI)

65.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	168
AciI	CCGC	7 cut(s)	133, 166, 235, 247, 280, 288, 318
AclWI	GGATC	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	2 cut(s)	242, 278
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	202
AluBI	AGCT	2 cut(s)	109, 184
AluI	AGCT	2 cut(s)	109, 184
Alw21I	GWGCWC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	63, 282, 314
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	163, 297
AsuC2I	CCSGG	2 cut(s)	260, 301
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	50, 294, 301
BceAI	ACGGC	1 cut(s)	275
BcnI	CCSGG	2 cut(s)	260, 301
BfmI	CTRYAG	1 cut(s)	121
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	7 cut(s)	64, 235, 248, 283, 288, 315, 318
BlsI	GCNGC	7 cut(s)	65, 236, 249, 284, 289, 316, 319
Bme1390I	CCNGG	2 cut(s)	260, 301
Bme18I	GGWCC	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	163, 297
BmrFI	CCNGG	2 cut(s)	260, 301
BpiI	GAAGAC	1 cut(s)	32
BplI	GAGNNNNNCTC	4 cut(s)	66, 98, 173, 205
BpuMI	CCSGG	2 cut(s)	260, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	50, 294, 301
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	259, 300
BslI	CCNNNNNNNGG	1 cut(s)	294
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	7 cut(s)	133, 166, 235, 247, 280, 288, 318
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	168
BspPI	GGATC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 156, 165, 195, 231
BstSCI	CCNGG	2 cut(s)	258, 299
BstSFI	CTRYAG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	50, 294, 301
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	164
BtsI	GCAGTG	2 cut(s)	16, 220
BtsIMutI	CAGTG	2 cut(s)	16, 220
Cac8I	GCNNGC	1 cut(s)	166
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	163, 297
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	241, 277
CspCI	CAANNNNNGTGG	2 cut(s)	245, 280
CviJI	RGCY	3 cut(s)	109, 164, 184
CviKI_1	RGCY	3 cut(s)	109, 164, 184
CviQI	GTAC	2 cut(s)	241, 277
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	148
Ecl136II	GAGCTC	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	186
FauI	CCCGC	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	7 cut(s)	64, 235, 248, 283, 288, 315, 318
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	7 cut(s)	64, 235, 248, 283, 288, 315, 318
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	7 cut(s)	64, 235, 248, 283, 288, 315, 318
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	2 cut(s)	259, 300
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	6 cut(s)	28, 75, 173, 206, 252, 269
HpaII	CCGG	2 cut(s)	259, 300
Hpy166II	GTNNAC	2 cut(s)	79, 256
Hpy188I	TCNGA	3 cut(s)	74, 114, 274
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	2 cut(s)	79, 256
Hpy99I	CGWCG	2 cut(s)	173, 214
HpyCH4V	TGCA	2 cut(s)	150, 335
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 156, 165, 195, 231
HpyF3I	CTNAG	1 cut(s)	71
HspAI	GCGC	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	6 cut(s)	59, 251, 272, 280, 313, 338
Lsp1109I	GCAGC	3 cut(s)	50, 294, 301
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	4 cut(s)	28, 31, 34, 37
MhlI	GDGCHC	1 cut(s)	186
MlyI	GAGTC	4 cut(s)	22, 84, 200, 261
MnlI	CCTC	5 cut(s)	80, 92, 103, 152, 155
MspI	CCGG	2 cut(s)	259, 300
MspR9I	CCNGG	2 cut(s)	260, 301
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	5 cut(s)	63, 156, 165, 195, 231
NciI	CCSGG	2 cut(s)	260, 301
NdeII	GATC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	173, 269
PkrI	GCNGC	7 cut(s)	65, 236, 249, 284, 289, 316, 319
PleI	GAGTC	4 cut(s)	22, 83, 200, 260
PpsI	GAGTC	4 cut(s)	22, 83, 200, 260
Psp124BI	GAGCTC	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	163, 297
RsaI	GTAC	2 cut(s)	242, 278
RsaNI	GTAC	2 cut(s)	241, 277
SacI	GAGCTC	1 cut(s)	186
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	7 cut(s)	64, 235, 248, 283, 288, 315, 318
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	2 cut(s)	163, 297
SchI	GAGTC	4 cut(s)	22, 84, 200, 261
ScrFI	CCNGG	2 cut(s)	260, 301
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	5 cut(s)	48, 72, 84, 111, 186
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	297
SsiI	CCGC	7 cut(s)	133, 166, 235, 247, 280, 288, 318
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	258, 299
TaqI	TCGA	3 cut(s)	78, 171, 216
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	4 cut(s)	237, 250, 290, 320
TfiI	GAWTC	2 cut(s)	173, 269
TscAI	CASTG	2 cut(s)	16, 227
TseI	GCWGC	3 cut(s)	63, 282, 314
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	16, 227
VpaK11BI	GGWCC	1 cut(s)	297
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.