Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Reverse (-)

47551482 .. 47552432

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGACGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACAGAGTGCCATTGCTGCCACCTCAGAGTCGACCTCGCCAAATCCTCCAAGAACAACAAGCTTCAGATTCTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAGCAAGTGCTTGGCCCGCGTCGAATCCACCGAGCTCTGCTCCTACTGCTTCAACGACTCGTCGTCCGGCCACTGCTTCTCTTGCCGCCAGTGCAAGCGCAGAGTCCACAGGGACTGCGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCGGGTCGTCGTCTGCCGCCGCCGACGAGGTCTCTGTCTGCGCCGATTGCTGGGTATCGGAGTCGCTGGCGAGGTGGAGGAGAAGTAGAAACATCAGTAGTGGTAGAAAGAATAGGGCGGATTTGGGATTGGGGAGATCTAGGGTTTTGAATTATGAGAGGAAATGTGATCCAAATTCGACTGATTCATCTACAGAGGAGGAGGCTGGGTGTTTGAGACTTGATCATGTTGCAGAAGAAGAAGAGATTGGGGATGATGAGCCTTTGAAGGAAGGACAAGGGAGTTGCTCAAATGGTGTCGAATGGGAGTCTCCACCGTCTTATAAACAAGATGACTGCAACTGTATCACTTTGCCGAAAGTCGAAATTGGGAATGCAAAGCTTGATCCTTATTATTTCAAGTACAGGAGGAGGAGGAGCAGTGTTGATCACTCTCTGTTGACATACAAGAGGAGAAGCATTGTTGACTGCTTTAAGATTGATTGTCCTCTGTTGACATATAAGAGGAGAGGCAGTGTTGACTATCGGTTTATGTTTACGTATAAGAGGAGGAGGAACTTTGATCAATCTATGTTGACATATGAGAGGAGGAGACCTGAAATCGTTTACGCGAGTTCAAAGATGCAGCTTGAGGGTCAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.52

Weight (kDa)

8.72

Isoelectric Point (pI)

79.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	2 cut(s)	177, 917
AciI	CCGC	8 cut(s)	142, 175, 244, 289, 297, 324, 327, 425
AclWI	GGATC	3 cut(s)	152, 470, 686
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	287, 710
AfiI	CCNNNNNNNGG	2 cut(s)	303, 357
AgsI	TTSAA	5 cut(s)	211, 457, 574, 706, 924
AhdI	GACNNNNNGTC	1 cut(s)	220
AjuI	GAANNNNNNNTTGG	2 cut(s)	537, 569
AluBI	AGCT	4 cut(s)	118, 193, 688, 934
AluI	AGCT	4 cut(s)	118, 193, 688, 934
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	4 cut(s)	343, 517, 621, 892
AlwI	GGATC	3 cut(s)	152, 470, 686
AlwNI	CAGNNNCTG	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	2 cut(s)	171, 226
ApeKI	GCWGC	4 cut(s)	72, 159, 291, 931
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	3 cut(s)	258, 296, 350
AspS9I	GGNCC	2 cut(s)	172, 306
AsuC2I	CCSGG	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	4 cut(s)	59, 171, 303, 943
BceAI	ACGGC	1 cut(s)	284
BclI	TGATCA	3 cut(s)	529, 733, 868
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	4 cut(s)	343, 517, 621, 892
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	3 cut(s)	130, 157, 498
BfoI	RGCGCY	1 cut(s)	297
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	8 cut(s)	73, 160, 244, 292, 297, 324, 327, 932
BlsI	GCNGC	8 cut(s)	74, 161, 245, 293, 298, 325, 328, 933
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	306
BmeRI	GACNNNNNGTC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	172, 306
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	918
BpiI	GAAGAC	1 cut(s)	41
BplI	GAGNNNNNCTC	4 cut(s)	75, 107, 182, 214
BpuMI	CCSGG	1 cut(s)	310
BsaAI	YACGTR	1 cut(s)	846
BsaI	GGTCTC	2 cut(s)	343, 892
BsaXI	ACNNNNNCTCC	8 cut(s)	376, 406, 500, 530, 712, 742, 805, 835
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 357
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	303, 357
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	4 cut(s)	59, 171, 303, 943
BseYI	CCCAGC	2 cut(s)	357, 512
Bsh1236I	CGCG	2 cut(s)	177, 917
BshFI	GGCC	2 cut(s)	173, 228
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	225, 309
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	303, 357
BsmAI	GTCTC	4 cut(s)	343, 517, 621, 892
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	2 cut(s)	173, 228
Bso31I	GGTCTC	2 cut(s)	343, 892
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	7 cut(s)	144, 443, 475, 529, 691, 733, 868
BspACI	CCGC	8 cut(s)	142, 175, 244, 289, 297, 324, 327, 425
BspANI	GGCC	2 cut(s)	173, 228
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	177, 917
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	3 cut(s)	152, 470, 686
BspTNI	GGTCTC	2 cut(s)	343, 892
BsrDI	GCAATG	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	7 cut(s)	144, 443, 475, 529, 691, 733, 868
Bst4CI	ACNGT	2 cut(s)	624, 650
Bst6I	CTCTTC	1 cut(s)	543
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	846
BstC8I	GCNNGC	3 cut(s)	175, 254, 375
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	565
BstFNI	CGCG	2 cut(s)	177, 917
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	3 cut(s)	258, 296, 350
BstKTI	GATC	7 cut(s)	147, 446, 478, 532, 694, 736, 871
BstMAI	GTCTC	4 cut(s)	343, 517, 621, 892
BstMBI	GATC	7 cut(s)	144, 443, 475, 529, 691, 733, 868
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 165, 174, 204, 240, 249, 354
BstSCI	CCNGG	1 cut(s)	308
BstSFI	CTRYAG	3 cut(s)	130, 157, 498
BstSNI	TACGTA	1 cut(s)	846
BstUI	CGCG	2 cut(s)	177, 917
BstV1I	GCAGC	4 cut(s)	59, 171, 303, 943
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	173, 228
BtsCI	GGATG	1 cut(s)	565
BtsI	GCAGTG	4 cut(s)	25, 229, 733, 826
BtsIMutI	CAGTG	6 cut(s)	25, 229, 254, 733, 826, 950
Cac8I	GCNNGC	3 cut(s)	175, 254, 375
CaiI	CAGNNNCTG	1 cut(s)	273
CfoI	GCGC	3 cut(s)	258, 296, 350
Cfr13I	GGNCC	2 cut(s)	172, 306
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	286, 709
CviAII	CATG	1 cut(s)	533
CviJI	RGCY	8 cut(s)	118, 173, 193, 228, 512, 568, 688, 934
CviKI_1	RGCY	8 cut(s)	118, 173, 193, 228, 512, 568, 688, 934
CviQI	GTAC	2 cut(s)	286, 709
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	7 cut(s)	146, 445, 477, 531, 693, 735, 870
DpnII	GATC	7 cut(s)	144, 443, 475, 529, 691, 733, 868
DriI	GACNNNNNGTC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	543
Eam1105I	GACNNNNNGTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	2 cut(s)	157, 440
Ecl136II	GAGCTC	1 cut(s)	193
Eco105I	TACGTA	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	2 cut(s)	343, 892
Eco47I	GGWCC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	1 cut(s)	536
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	1 cut(s)	532
FauI	CCCGC	1 cut(s)	182
FauNDI	CATATG	1 cut(s)	886
FbaI	TGATCA	3 cut(s)	529, 733, 868
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	8 cut(s)	73, 160, 244, 292, 297, 324, 327, 932
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	8 cut(s)	73, 160, 244, 292, 297, 324, 327, 932
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	3 cut(s)	257, 295, 349
GluI	GCNGC	8 cut(s)	73, 160, 244, 292, 297, 324, 327, 932
GsaI	CCCAGC	2 cut(s)	361, 516
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	173, 228
HapII	CCGG	2 cut(s)	225, 309
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	3 cut(s)	258, 296, 350
Hin1II	CATG	1 cut(s)	536
Hin6I	GCGC	3 cut(s)	256, 294, 348
HinP1I	GCGC	3 cut(s)	256, 294, 348
HincII	GTYRAC	6 cut(s)	88, 747, 772, 801, 826, 882
HindII	GTYRAC	6 cut(s)	88, 747, 772, 801, 826, 882
HindIII	AAGCTT	2 cut(s)	116, 686
HpaII	CCGG	2 cut(s)	225, 309
Hpy166II	GTNNAC	9 cut(s)	88, 265, 747, 772, 801, 826, 843, 882, 913
Hpy188I	TCNGA	4 cut(s)	83, 123, 283, 367
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	9 cut(s)	88, 265, 747, 772, 801, 826, 843, 882, 913
Hpy99I	CGWCG	7 cut(s)	10, 13, 16, 182, 223, 319, 335
HpyAV	CCTTC	2 cut(s)	568, 572
HpyCH4III	ACNGT	2 cut(s)	624, 650
HpyCH4IV	ACGT	1 cut(s)	845
HpyCH4V	TGCA	6 cut(s)	159, 252, 539, 645, 683, 931
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 165, 174, 204, 240, 249, 354
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	845
Hsp92II	CATG	1 cut(s)	536
HspAI	GCGC	3 cut(s)	256, 294, 348
Ksp22I	TGATCA	3 cut(s)	529, 733, 868
Kzo9I	GATC	7 cut(s)	144, 443, 475, 529, 691, 733, 868
LmnI	GCTCC	2 cut(s)	203, 723
Lsp1109I	GCAGC	4 cut(s)	59, 171, 303, 943
LweI	GCATC	1 cut(s)	918
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	1 cut(s)	845
MalI	GATC	7 cut(s)	146, 445, 477, 531, 693, 735, 870
MboI	GATC	7 cut(s)	144, 443, 475, 529, 691, 733, 868
MboII	GAAGA	7 cut(s)	37, 40, 43, 46, 554, 557, 560
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	3 cut(s)	457, 481, 672
MlyI	GAGTC	6 cut(s)	31, 93, 209, 270, 377, 623
MseI	TTAA	1 cut(s)	780
MspI	CCGG	2 cut(s)	225, 309
MspR9I	CCNGG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	685
MvnI	CGCG	2 cut(s)	177, 917
MwoI	GCNNNNNNNGC	7 cut(s)	72, 165, 174, 204, 240, 249, 354
NciI	CCSGG	1 cut(s)	310
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	7 cut(s)	144, 443, 475, 529, 691, 733, 868
NlaIII	CATG	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 186
PctI	GAATGC	1 cut(s)	685
PfeI	GAWTC	4 cut(s)	124, 182, 278, 491
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	8 cut(s)	74, 161, 245, 293, 298, 325, 328, 933
PleI	GAGTC	6 cut(s)	31, 92, 209, 269, 376, 622
PpsI	GAGTC	6 cut(s)	31, 92, 209, 269, 376, 622
Ppu21I	YACGTR	1 cut(s)	846
PsiI	TTATAA	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	195
PspFI	CCCAGC	2 cut(s)	357, 512
PspPI	GGNCC	2 cut(s)	172, 306
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	443
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	2 cut(s)	287, 710
RsaNI	GTAC	2 cut(s)	286, 709
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	780
SatI	GCNGC	8 cut(s)	73, 160, 244, 292, 297, 324, 327, 932
Sau3AI	GATC	7 cut(s)	144, 443, 475, 529, 691, 733, 868
Sau96I	GGNCC	2 cut(s)	172, 306
SchI	GAGTC	6 cut(s)	31, 93, 209, 270, 377, 623
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	918
SfcI	CTRYAG	3 cut(s)	130, 157, 498
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	935
SmoI	CTYRAG	1 cut(s)	935
SnaBI	TACGTA	1 cut(s)	846
Sse9I	AATT	3 cut(s)	457, 481, 672
SsiI	CCGC	8 cut(s)	142, 175, 244, 289, 297, 324, 327, 425
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	624, 650
TaiI	ACGT	1 cut(s)	848
TaqI	TCGA	5 cut(s)	87, 180, 485, 606, 669
TasI	AATT	3 cut(s)	457, 481, 672
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	4 cut(s)	246, 299, 326, 329
TfiI	GAWTC	4 cut(s)	124, 182, 278, 491
Tru1I	TTAA	1 cut(s)	780
Tru9I	TTAA	1 cut(s)	780
TscAI	CASTG	6 cut(s)	25, 236, 254, 733, 826, 950
TseI	GCWGC	4 cut(s)	72, 159, 291, 931
TspDTI	ATGAA	1 cut(s)	483
TspRI	CASTG	6 cut(s)	25, 236, 254, 733, 826, 950
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.