Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Forward (+)

30244368 .. 30245702

Gene Structure 1335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G356600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGCTTCAAAGCGTTGTCGCTGCCAATGATTCAATGAAGAGCAATGAAGAAGCCCAAGCAGCGAAGAAAACGAGAGAGTTGCCCAATCTCTCAGAGTGCCATTCGTGCCACCTGAGAGTCGACATTGCCAACGACAATGCCAAGAGCAAACTTAACGTCCTGTATAGCGAGTGGCGCGTCGTCCTTCTCTGCAAGAAATGCTTCTCTCGCGTCGAGTCCTCGGAGCTCTGCTCCTATTGCTTCTCCACTTCGTTGTCCCAAGAATCTTTCTCTTGCCGCCAGTGTAACCGGAGAGTCCACAGGCATTGCGATTCCGAGTACCAAAGCGTTGTGGTCTTGTCCGATTCTTCTTCGGCCACGGAGTTTTCGGTCTGCGCCGATTGCCGGATTCCGGAGTCGCTGGTCAAGTGGAGAGGGGTTGTGAGCAATAGGAAGGGTCGGAGGACTGGAAAGAGAAGAGTTGGTTTGGGATTGGGTAAATCTAGGGTTTCGGCCATGGTGGATGACGGGGAAATTGATGATGCCTTTGGTGGCGAAGAGGGCTCAAACAGTAGGAGGGATGAGGATGCTGCTGTTGATGATGATGGGCCCTCGAAGGAAGGAGAAATGAGCTGCTCCAATGGTGTTGACTTGGAGTCTCCGACTTTCTGTAAACAAGAGGAATGTATCTGTATTTCCACGCCAAAGGAGCAAAGCTGCAATGCAAGGGTTGATCCCTTTTATTTCAAGTATAGGAAAAGGAGCACTCTTGATTGCTATGTGTTGACATACAAGAAGAGAAGGCCCAAAAACTTCAACCCAAGAGCGCTTGACATTGAAGAAGAGAGTGAAGATGATGATGGGCCGTTGAAGGAAGGAGAAGTGAGCTGCTCCAATGGTGTTGACTTGGAGTCTCCAACTTTCTGTAAACAAGAGCAAGAGGAATGTATCTGTATTACCACGCCAAAGGAGCAAAGGTGCAATGCAAAGCTTGATCCTTTTTTTTTAAAGTATAGGAAAAGGAGCACTCTTGATCGCAATGTGTTAACATACAAGAAGAGAAGGCCCAAAAACCTCAACGCTTCTTCTATGTTAACATATAAGAGAAGGAAACCCAAAAGCCTCTATGCTTGTTATACATTTACGTATAAGAGGAGGAGACCCAGAATTCTGTATGCTCGTTCAACTGGTTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

44.64

Weight (kDa)

8.77

Isoelectric Point (pI)

74.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	2 cut(s)	177, 210
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	2 cut(s)	707, 968
AcoI	YGGCCR	2 cut(s)	354, 492
AcsI	RAATTY	1 cut(s)	1146
AfaI	GTAC	1 cut(s)	320
AfeI	AGCGCT	1 cut(s)	807
AfiI	CCNNNNNNNGG	2 cut(s)	384, 391
AgsI	TTSAA	7 cut(s)	8, 33, 727, 796, 818, 850, 1164
AhdI	GACNNNNNGTC	2 cut(s)	634, 889
AluBI	AGCT	5 cut(s)	226, 612, 696, 867, 970
AluI	AGCT	5 cut(s)	226, 612, 696, 867, 970
Alw21I	GWGCWC	3 cut(s)	228, 746, 1007
Alw26I	GTCTC	3 cut(s)	642, 897, 1132
AlwI	GGATC	2 cut(s)	707, 968
Aor13HI	TCCGGA	1 cut(s)	391
Aor51HI	AGCGCT	1 cut(s)	807
AoxI	GGCC	6 cut(s)	354, 492, 587, 782, 842, 1043
ApaI	GGGCCC	1 cut(s)	591
ApeKI	GCWGC	6 cut(s)	20, 59, 569, 612, 696, 867
ApoI	RAATTY	1 cut(s)	1146
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	3 cut(s)	177, 377, 808
AspS9I	GGNCC	5 cut(s)	587, 588, 783, 842, 1044
BaeGI	GKGCMC	1 cut(s)	591
BanII	GRGCYC	3 cut(s)	228, 545, 591
Bbv12I	GWGCWC	3 cut(s)	228, 746, 1007
BbvI	GCAGC	6 cut(s)	7, 71, 556, 599, 683, 854
BccI	CCATC	2 cut(s)	578, 833
BceAI	ACGGC	1 cut(s)	829
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BcoDI	GTCTC	3 cut(s)	642, 897, 1132
BfaI	CTAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	809
BisI	GCNGC	7 cut(s)	21, 60, 277, 570, 613, 697, 868
BlsI	GCNGC	7 cut(s)	22, 61, 278, 571, 614, 698, 869
BmeRI	GACNNNNNGTC	2 cut(s)	634, 889
BmgT120I	GGNCC	5 cut(s)	587, 588, 783, 842, 1044
BmiI	GGNNCC	1 cut(s)	589
BmsI	GCATC	2 cut(s)	511, 556
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BsaAI	YACGTR	1 cut(s)	1125
BsaI	GGTCTC	1 cut(s)	1132
BsaJI	CCNNGG	3 cut(s)	219, 357, 495
BsaWI	WCCGGW	2 cut(s)	288, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	941, 971
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 391
Bse1I	ACTGG	3 cut(s)	280, 451, 1171
Bse3DI	GCAATG	6 cut(s)	49, 123, 304, 706, 967, 1024
BseAI	TCCGGA	1 cut(s)	391
BseDI	CCNNGG	3 cut(s)	219, 357, 495
BseGI	GGATG	3 cut(s)	508, 565, 571
BseLI	CCNNNNNNNGG	2 cut(s)	384, 391
BseMI	GCAATG	6 cut(s)	49, 123, 304, 706, 967, 1024
BseMII	CTCAG	2 cut(s)	104, 105
BseNI	ACTGG	3 cut(s)	280, 451, 1171
BseRI	GAGGAG	2 cut(s)	1147, 1150
BseSI	GKGCMC	1 cut(s)	591
BseXI	GCAGC	6 cut(s)	7, 71, 556, 599, 683, 854
Bsh1236I	CGCG	2 cut(s)	177, 210
BshFI	GGCC	6 cut(s)	356, 494, 589, 784, 844, 1045
BsiHKAI	GWGCWC	3 cut(s)	228, 746, 1007
BsiSI	CCGG	3 cut(s)	289, 385, 392
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	384, 391
BsmAI	GTCTC	3 cut(s)	642, 897, 1132
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	6 cut(s)	356, 494, 589, 784, 844, 1045
Bso31I	GGTCTC	1 cut(s)	1132
Bsp120I	GGGCCC	1 cut(s)	587
Bsp1286I	GDGCHC	5 cut(s)	228, 545, 591, 746, 1007
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	712, 973, 1012
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	6 cut(s)	356, 494, 589, 784, 844, 1045
BspCNI	CTCAG	2 cut(s)	104, 105
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	2 cut(s)	177, 210
BspLI	GGNNCC	1 cut(s)	589
BspPI	GGATC	2 cut(s)	707, 968
BspQI	GCTCTTC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	1132
BsrDI	GCAATG	6 cut(s)	49, 123, 304, 706, 967, 1024
BsrI	ACTGG	3 cut(s)	280, 451, 1171
BssECI	CCNNGG	3 cut(s)	219, 357, 495
BssMI	GATC	3 cut(s)	712, 973, 1012
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	6 cut(s)	32, 451, 531, 770, 816, 1031
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	1125
BstDEI	CTNAG	2 cut(s)	91, 113
BstDSI	CCRYGG	2 cut(s)	357, 495
BstF5I	GGATG	3 cut(s)	508, 565, 571
BstFNI	CGCG	2 cut(s)	177, 210
BstH2I	RGCGCY	1 cut(s)	809
BstHHI	GCGC	3 cut(s)	177, 377, 808
BstKTI	GATC	3 cut(s)	715, 976, 1015
BstMAI	GTCTC	3 cut(s)	642, 897, 1132
BstMBI	GATC	3 cut(s)	712, 973, 1012
BstSLI	GKGCMC	1 cut(s)	591
BstSNI	TACGTA	1 cut(s)	1125
BstUI	CGCG	2 cut(s)	177, 210
BstV1I	GCAGC	6 cut(s)	7, 71, 556, 599, 683, 854
BsuRI	GGCC	6 cut(s)	356, 494, 589, 784, 844, 1045
BtgI	CCRYGG	2 cut(s)	357, 495
BtsCI	GGATG	3 cut(s)	508, 565, 571
BtsIMutI	CAGTG	1 cut(s)	287
CfoI	GCGC	3 cut(s)	177, 377, 808
Cfr13I	GGNCC	5 cut(s)	587, 588, 783, 842, 1044
CseI	GACGC	2 cut(s)	166, 199
Csp6I	GTAC	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	287, 322
CviAII	CATG	1 cut(s)	496
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	2 cut(s)	91, 113
DpnI	GATC	3 cut(s)	714, 975, 1014
DpnII	GATC	3 cut(s)	712, 973, 1012
DraI	TTTAAA	1 cut(s)	987
DriI	GACNNNNNGTC	2 cut(s)	634, 889
EaeI	YGGCCR	2 cut(s)	354, 492
Eam1104I	CTCTTC	6 cut(s)	32, 451, 531, 770, 816, 1031
Eam1105I	GACNNNNNGTC	2 cut(s)	634, 889
EarI	CTCTTC	6 cut(s)	32, 451, 531, 770, 816, 1031
Ecl136II	GAGCTC	1 cut(s)	226
Eco105I	TACGTA	1 cut(s)	1125
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	3 cut(s)	228, 545, 591
Eco31I	GGTCTC	1 cut(s)	1132
Eco47III	AGCGCT	1 cut(s)	807
Eco53kI	GAGCTC	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	1146
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	3 cut(s)	228, 545, 591
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	1 cut(s)	499
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	7 cut(s)	21, 60, 277, 570, 613, 697, 868
FokI	GGATG	3 cut(s)	515, 572, 578
FriOI	GRGCYC	3 cut(s)	228, 545, 591
Fsp4HI	GCNGC	7 cut(s)	21, 60, 277, 570, 613, 697, 868
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	3 cut(s)	176, 376, 807
GluI	GCNGC	7 cut(s)	21, 60, 277, 570, 613, 697, 868
HaeII	RGCGCY	1 cut(s)	809
HaeIII	GGCC	6 cut(s)	356, 494, 589, 784, 844, 1045
HapII	CCGG	3 cut(s)	289, 385, 392
HgaI	GACGC	2 cut(s)	166, 199
HhaI	GCGC	3 cut(s)	177, 377, 808
Hin1II	CATG	1 cut(s)	499
Hin6I	GCGC	3 cut(s)	175, 375, 806
HinP1I	GCGC	3 cut(s)	175, 375, 806
HincII	GTYRAC	6 cut(s)	121, 628, 765, 883, 1026, 1074
HindII	GTYRAC	6 cut(s)	121, 628, 765, 883, 1026, 1074
HindIII	AAGCTT	1 cut(s)	968
HpaI	GTTAAC	2 cut(s)	1026, 1074
HpaII	CCGG	3 cut(s)	289, 385, 392
Hpy166II	GTNNAC	9 cut(s)	121, 298, 628, 653, 765, 883, 908, 1026, 1074
Hpy188I	TCNGA	6 cut(s)	94, 223, 316, 343, 441, 642
Hpy188III	TCNNGA	4 cut(s)	392, 749, 1010, 1176
Hpy8I	GTNNAC	9 cut(s)	121, 298, 628, 653, 765, 883, 908, 1026, 1074
Hpy99I	CGWCG	2 cut(s)	182, 215
HpyAV	CCTTC	9 cut(s)	194, 427, 589, 593, 774, 844, 848, 1035, 1080
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	2 cut(s)	156, 1124
HpyCH4V	TGCA	5 cut(s)	192, 699, 704, 960, 965
HpyF3I	CTNAG	2 cut(s)	91, 113
HpySE526I	ACGT	2 cut(s)	156, 1124
Hsp92II	CATG	1 cut(s)	499
HspAI	GCGC	3 cut(s)	175, 375, 806
Kpn2I	TCCGGA	1 cut(s)	391
KspAI	GTTAAC	2 cut(s)	1026, 1074
Kzo9I	GATC	3 cut(s)	712, 973, 1012
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	8 cut(s)	223, 236, 620, 688, 741, 875, 949, 1002
Lsp1109I	GCAGC	6 cut(s)	7, 71, 556, 599, 683, 854
LweI	GCATC	2 cut(s)	511, 556
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	2 cut(s)	156, 1124
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	3 cut(s)	714, 975, 1014
MboI	GATC	3 cut(s)	712, 973, 1012
MhlI	GDGCHC	5 cut(s)	228, 545, 591, 746, 1007
MluCI	AATT	2 cut(s)	513, 1146
MlyI	GAGTC	6 cut(s)	126, 224, 303, 404, 644, 899
MmeI	TCCRAC	3 cut(s)	419, 665, 920
MroI	TCCGGA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	4 cut(s)	153, 986, 1025, 1073
MspI	CCGG	3 cut(s)	289, 385, 392
MvnI	CGCG	2 cut(s)	177, 210
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	3 cut(s)	712, 973, 1012
NlaIII	CATG	1 cut(s)	499
NlaIV	GGNNCC	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	5 cut(s)	29, 263, 311, 344, 388
PkrI	GCNGC	7 cut(s)	22, 61, 278, 571, 614, 698, 869
PleI	GAGTC	6 cut(s)	125, 223, 302, 403, 643, 898
PpsI	GAGTC	6 cut(s)	125, 223, 302, 403, 643, 898
Ppu21I	YACGTR	1 cut(s)	1125
Psp124BI	GAGCTC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	589
PspOMI	GGGCCC	1 cut(s)	587
PspPI	GGNCC	5 cut(s)	587, 588, 783, 842, 1044
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	4 cut(s)	153, 986, 1025, 1073
SatI	GCNGC	7 cut(s)	21, 60, 277, 570, 613, 697, 868
Sau3AI	GATC	3 cut(s)	712, 973, 1012
Sau96I	GGNCC	5 cut(s)	587, 588, 783, 842, 1044
SchI	GAGTC	6 cut(s)	126, 224, 303, 404, 644, 899
SduI	GDGCHC	5 cut(s)	228, 545, 591, 746, 1007
SfaNI	GCATC	2 cut(s)	511, 556
SnaBI	TACGTA	1 cut(s)	1125
Sse9I	AATT	2 cut(s)	513, 1146
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	1 cut(s)	483
SstI	GAGCTC	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	2 cut(s)	159, 1127
TaqI	TCGA	3 cut(s)	120, 213, 593
TaqII	GACCGA	1 cut(s)	358
TasI	AATT	2 cut(s)	513, 1146
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	5 cut(s)	29, 263, 311, 344, 388
Tru1I	TTAA	4 cut(s)	153, 986, 1025, 1073
Tru9I	TTAA	4 cut(s)	153, 986, 1025, 1073
TscAI	CASTG	1 cut(s)	287
TseI	GCWGC	6 cut(s)	20, 59, 569, 612, 696, 867
TspDTI	ATGAA	3 cut(s)	50, 60, 1161
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	287
XapI	RAATTY	1 cut(s)	1146
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.