Rh1AG314500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002273
Physical Location & Seq
Forward (+)
54726374 .. 54726718
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG314500.1

Sequence Viewer

Length: 345 bp
ATGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAGAGTCGACCTCGCCAAATCCTCCAAGAACAACAAGCTTCAGATTCTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCTACCGAGCTCTGCTCCAACTGCTTCAACGACTCGTCGTTCGGCCACTGCTTCTCTTGCCGCCAGTACAAGCGGCGAGTCCACCGGGATTGCTATTCCGAGTACCGCAGCGCCGCCATCTGGTCCGGGTCATTGTCTGCTGCCGCCGACCAGGTCTCTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.08

Weight (kDa)

8.98

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AccII CGCG 1 cut(s) 174
AciI CCGC 7 cut(s) 139, 172, 241, 253, 286, 294, 324
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 2 cut(s) 248, 284
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 2 cut(s) 115, 190
AluI AGCT 2 cut(s) 115, 190
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 2 cut(s) 168, 223
ApeKI GCWGC 3 cut(s) 69, 288, 320
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 169, 303
AsuC2I CCSGG 2 cut(s) 266, 307
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 3 cut(s) 56, 300, 307
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 332
BcnI CCSGG 2 cut(s) 266, 307
BcoDI GTCTC 1 cut(s) 340
BfmI CTRYAG 1 cut(s) 127
BfoI RGCGCY 1 cut(s) 294
BisI GCNGC 7 cut(s) 70, 241, 254, 289, 294, 321, 324
BlsI GCNGC 7 cut(s) 71, 242, 255, 290, 295, 322, 325
Bme1390I CCNGG 3 cut(s) 266, 307, 332
Bme18I GGWCC 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 169, 303
BmrFI CCNGG 3 cut(s) 266, 307, 332
BpiI GAAGAC 1 cut(s) 38
BplI GAGNNNNNCTC 4 cut(s) 72, 104, 179, 211
BpuMI CCSGG 2 cut(s) 266, 307
BsaI GGTCTC 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 332
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 3 cut(s) 56, 300, 307
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 170, 225
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 2 cut(s) 265, 306
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 340
BsnI GGCC 2 cut(s) 170, 225
Bso31I GGTCTC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 7 cut(s) 139, 172, 241, 253, 286, 294, 324
BspANI GGCC 2 cut(s) 170, 225
BspCNI CTCAG 1 cut(s) 90
BspFNI CGCG 1 cut(s) 174
BspPI GGATC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 1 cut(s) 244
BssMI GATC 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 77
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 5 cut(s) 69, 162, 171, 201, 237
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 3 cut(s) 264, 305, 330
BstSFI CTRYAG 1 cut(s) 127
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 56, 300, 307
BstV2I GAAGAC 1 cut(s) 38
BsuRI GGCC 2 cut(s) 170, 225
BtsI GCAGTG 2 cut(s) 22, 226
BtsIMutI CAGTG 2 cut(s) 22, 226
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 169, 303
CseI GACGC 1 cut(s) 163
CsiI ACCWGGT 1 cut(s) 330
Csp6I GTAC 2 cut(s) 247, 283
CspCI CAANNNNNGTGG 2 cut(s) 251, 286
CviJI RGCY 4 cut(s) 115, 170, 190, 225
CviKI_1 RGCY 4 cut(s) 115, 170, 190, 225
CviQI GTAC 2 cut(s) 247, 283
DdeI CTNAG 1 cut(s) 77
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 223
EciI GGCGGA 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 192
FauI CCCGC 1 cut(s) 179
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 7 cut(s) 70, 241, 254, 289, 294, 321, 324
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 7 cut(s) 70, 241, 254, 289, 294, 321, 324
GlaI GCGC 1 cut(s) 292
GluI GCNGC 7 cut(s) 70, 241, 254, 289, 294, 321, 324
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 2 cut(s) 170, 225
HapII CCGG 2 cut(s) 265, 306
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 293
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 6 cut(s) 34, 81, 121, 179, 212, 258
HpaII CCGG 2 cut(s) 265, 306
Hpy166II GTNNAC 2 cut(s) 85, 262
Hpy188I TCNGA 4 cut(s) 80, 120, 280, 344
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 2 cut(s) 85, 262
Hpy99I CGWCG 4 cut(s) 10, 13, 179, 220
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 5 cut(s) 69, 162, 171, 201, 237
HpyF3I CTNAG 1 cut(s) 77
HspAI GCGC 1 cut(s) 291
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 6 cut(s) 65, 257, 278, 286, 317, 319
Lsp1109I GCAGC 3 cut(s) 56, 300, 307
MabI ACCWGGT 1 cut(s) 330
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 4 cut(s) 34, 37, 40, 43
MhlI GDGCHC 1 cut(s) 192
MlyI GAGTC 4 cut(s) 28, 90, 206, 267
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 5 cut(s) 86, 98, 109, 158, 161
MspI CCGG 2 cut(s) 265, 306
MspR9I CCNGG 3 cut(s) 266, 307, 332
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 5 cut(s) 69, 162, 171, 201, 237
NciI CCSGG 2 cut(s) 266, 307
NdeII GATC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 2 cut(s) 121, 179
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 7 cut(s) 71, 242, 255, 290, 295, 322, 325
PleI GAGTC 4 cut(s) 28, 89, 206, 266
PpsI GAGTC 4 cut(s) 28, 89, 206, 266
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspPI GGNCC 2 cut(s) 169, 303
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 2 cut(s) 248, 284
RsaNI GTAC 2 cut(s) 247, 283
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 83
SatI GCNGC 7 cut(s) 70, 241, 254, 289, 294, 321, 324
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 2 cut(s) 169, 303
SchI GAGTC 4 cut(s) 28, 90, 206, 267
ScrFI CCNGG 3 cut(s) 266, 307, 332
SduI GDGCHC 1 cut(s) 192
SetI ASST 6 cut(s) 54, 78, 90, 117, 192, 336
SexAI ACCWGGT 1 cut(s) 330
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 1 cut(s) 303
SsiI CCGC 7 cut(s) 139, 172, 241, 253, 286, 294, 324
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 264, 305, 330
TaqI TCGA 2 cut(s) 84, 177
TatI WGTACW 1 cut(s) 246
TauI GCSGC 4 cut(s) 243, 256, 296, 326
TfiI GAWTC 2 cut(s) 121, 179
TscAI CASTG 2 cut(s) 22, 233
TseI GCWGC 3 cut(s) 69, 288, 320
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 2 cut(s) 22, 233
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.