Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Forward (+)

24039093 .. 24039819

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAAGAACAACGAAGATCTGCAATCGCAATCGACAAAGAAAACCAGAGAGTTGCCGAATCTGTCAGAGTGCCATTGTTGCCACCTGAGAGTAGACATTGCCAACGCCAGCGCCAAGAGCAAGCTTCAGATCCTCTACAGCGAGTGGCGCGTCGTCCTCCTCTGCAAGAAATGCCTCACGCGCGTCGAGTCCTCGGAGCTCTGCTCCTACTGCTTCGCCGCCACCTCGCCGTCGCAGGAGGACTCCTTCACTTGCTGCCAGTGTAATCGGAGAGTGCACAGGCGTTGCGATTCCGAGTATCGAGGGATTGCGCTGTTGTCTCAGAATTCTTGCTTGGCGGTGGAGGCTGAGGTTTGTGCCGATTGCTGGCTGCCGGAGTCGCTTGCGCGGTGGAGAGGGGTTGTGAGGAGTCGGAAGGCGCGGAGGAGTGGAAAGGGGAGAGCTTGTTTGGGATTGGGGAAGTATAGGGTTTCGGCCGTGGTGGATGGCAGGAAAATTTGTGATGTGTCTGGTGCTGAAGAGGGCTCAAAGGATGCGGCTTTCGATGATGATGATGATGACGACGACGACGACGACGACGATGATGGGCAGTTGGCTGCCATGAATGGCTCTGCTAAGAAACTGCGTTTGCGGAGTTTGAGAGTCTGGATATCGAAGAGGAGAATGGGGACGATGACGGGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.46

Weight (kDa)

8.12

Isoelectric Point (pI)

65.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	5 cut(s)	150, 181, 183, 388, 421
AciI	CCGC	6 cut(s)	219, 338, 388, 421, 536, 631
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	2 cut(s)	325, 495
AcuI	CTGAAG	2 cut(s)	110, 537
AfiI	CCNNNNNNNGG	1 cut(s)	366
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	3 cut(s)	124, 199, 443
AluI	AGCT	3 cut(s)	124, 199, 443
Alw21I	GWGCWC	2 cut(s)	201, 279
Alw26I	GTCTC	1 cut(s)	324
Alw44I	GTGCAC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	474
ApaLI	GTGCAC	1 cut(s)	275
ApeKI	GCWGC	3 cut(s)	255, 370, 596
ApoI	RAATTY	2 cut(s)	325, 495
AspLEI	GCGC	6 cut(s)	113, 150, 183, 313, 388, 421
BaeGI	GKGCMC	1 cut(s)	279
BanII	GRGCYC	2 cut(s)	201, 527
Bbv12I	GWGCWC	2 cut(s)	201, 279
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	242, 357, 583
BccI	CCATC	2 cut(s)	479, 578
BceAI	ACGGC	2 cut(s)	214, 461
BcoDI	GTCTC	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	136
BfoI	RGCGCY	1 cut(s)	114
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	5 cut(s)	219, 256, 371, 537, 597
BlsI	GCNGC	5 cut(s)	220, 257, 372, 538, 598
BmsI	GCATC	1 cut(s)	523
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu10I	CCTNAGC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	192, 477
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	192, 477
BseGI	GGATG	2 cut(s)	490, 538
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	3 cut(s)	77, 335, 339
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	4 cut(s)	149, 421, 439, 673
BseSI	GKGCMC	1 cut(s)	279
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	3 cut(s)	242, 357, 583
Bsh1236I	CGCG	5 cut(s)	150, 181, 183, 388, 421
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	1 cut(s)	476
BsiEI	CGRYCG	1 cut(s)	477
BsiHKAI	GWGCWC	2 cut(s)	201, 279
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	476
Bsp1286I	GDGCHC	3 cut(s)	201, 279, 527
Bsp143I	GATC	2 cut(s)	16, 129
BspACI	CCGC	6 cut(s)	219, 338, 388, 421, 536, 631
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	3 cut(s)	78, 334, 340
BspFNI	CGCG	5 cut(s)	150, 181, 183, 388, 421
BspPI	GGATC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	192, 477
BssMI	GATC	2 cut(s)	16, 129
Bst6I	CTCTTC	2 cut(s)	513, 650
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstC8I	GCNNGC	4 cut(s)	109, 122, 368, 384
BstDEI	CTNAG	4 cut(s)	86, 321, 348, 615
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	490, 538
BstFNI	CGCG	5 cut(s)	150, 181, 183, 388, 421
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	6 cut(s)	113, 150, 183, 313, 388, 421
BstKTI	GATC	2 cut(s)	19, 132
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	2 cut(s)	16, 129
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	8 cut(s)	78, 117, 147, 171, 180, 210, 344, 379
BstSFI	CTRYAG	1 cut(s)	136
BstSLI	GKGCMC	1 cut(s)	279
BstUI	CGCG	5 cut(s)	150, 181, 183, 388, 421
BstV1I	GCAGC	3 cut(s)	242, 357, 583
BstX2I	RGATCY	2 cut(s)	16, 129
BstYI	RGATCY	2 cut(s)	16, 129
BstZI	CGGCCG	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	490, 538
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	4 cut(s)	109, 122, 368, 384
CfoI	GCGC	6 cut(s)	113, 150, 183, 313, 388, 421
CseI	GACGC	2 cut(s)	139, 172
CviAII	CATG	1 cut(s)	601
DdeI	CTNAG	4 cut(s)	86, 321, 348, 615
DpnI	GATC	2 cut(s)	18, 131
DpnII	GATC	2 cut(s)	16, 129
EaeI	YGGCCR	1 cut(s)	474
EagI	CGGCCG	1 cut(s)	474
Eam1104I	CTCTTC	2 cut(s)	513, 650
EarI	CTCTTC	2 cut(s)	513, 650
Ecl136II	GAGCTC	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	474
Eco24I	GRGCYC	2 cut(s)	201, 527
Eco32I	GATATC	1 cut(s)	651
Eco52I	CGGCCG	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	110, 537
EcoICRI	GAGCTC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	201, 527
FaeI	CATG	1 cut(s)	604
FaiI	YATR	2 cut(s)	465, 602
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	5 cut(s)	219, 256, 371, 537, 597
FokI	GGATG	2 cut(s)	497, 545
FriOI	GRGCYC	2 cut(s)	201, 527
Fsp4HI	GCNGC	5 cut(s)	219, 256, 371, 537, 597
GlaI	GCGC	6 cut(s)	112, 149, 182, 312, 387, 420
GluI	GCNGC	5 cut(s)	219, 256, 371, 537, 597
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	2 cut(s)	139, 172
HhaI	GCGC	6 cut(s)	113, 150, 183, 313, 388, 421
Hin1II	CATG	1 cut(s)	604
Hin6I	GCGC	6 cut(s)	111, 148, 181, 311, 386, 419
HinP1I	GCGC	6 cut(s)	111, 148, 181, 311, 386, 419
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	7 cut(s)	58, 188, 242, 290, 377, 409, 642
HpaII	CCGG	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	94, 277
Hpy188I	TCNGA	7 cut(s)	67, 129, 196, 270, 295, 324, 414
Hpy188III	TCNNGA	1 cut(s)	646
Hpy8I	GTNNAC	2 cut(s)	94, 277
Hpy99I	CGWCG	9 cut(s)	155, 188, 235, 566, 569, 572, 575, 578, 581
HpyAV	CCTTC	2 cut(s)	256, 409
HpyCH4V	TGCA	3 cut(s)	22, 165, 277
HpyF10VI	GCNNNNNNNGC	8 cut(s)	78, 117, 147, 171, 180, 210, 344, 379
HpyF3I	CTNAG	4 cut(s)	86, 321, 348, 615
Hsp92II	CATG	1 cut(s)	604
HspAI	GCGC	6 cut(s)	111, 148, 181, 311, 386, 419
Kzo9I	GATC	2 cut(s)	16, 129
LmnI	GCTCC	2 cut(s)	196, 209
Lsp1109I	GCAGC	3 cut(s)	242, 357, 583
LweI	GCATC	1 cut(s)	523
MalI	GATC	2 cut(s)	18, 131
MboI	GATC	2 cut(s)	16, 129
MboII	GAAGA	4 cut(s)	16, 26, 530, 667
MflI	RGATCY	2 cut(s)	16, 129
MhlI	GDGCHC	3 cut(s)	201, 279, 527
MluCI	AATT	2 cut(s)	325, 495
MlyI	GAGTC	5 cut(s)	197, 236, 386, 418, 651
MmeI	TCCRAC	1 cut(s)	392
MspI	CCGG	1 cut(s)	374
MvnI	CGCG	5 cut(s)	150, 181, 183, 388, 421
MwoI	GCNNNNNNNGC	8 cut(s)	78, 117, 147, 171, 180, 210, 344, 379
NdeII	GATC	2 cut(s)	16, 129
NlaIII	CATG	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	4 cut(s)	567, 570, 573, 576
PfeI	GAWTC	2 cut(s)	58, 290
PkrI	GCNGC	5 cut(s)	220, 257, 372, 538, 598
PleI	GAGTC	5 cut(s)	196, 236, 385, 417, 650
PpsI	GAGTC	5 cut(s)	196, 236, 385, 417, 650
Psp124BI	GAGCTC	1 cut(s)	201
PsuI	RGATCY	2 cut(s)	16, 129
SacI	GAGCTC	1 cut(s)	201
SatI	GCNGC	5 cut(s)	219, 256, 371, 537, 597
Sau3AI	GATC	2 cut(s)	16, 129
SchI	GAGTC	5 cut(s)	197, 236, 386, 418, 651
SduI	GDGCHC	3 cut(s)	201, 279, 527
SetI	ASST	6 cut(s)	87, 126, 201, 227, 354, 445
SfaNI	GCATC	1 cut(s)	523
SfcI	CTRYAG	1 cut(s)	136
Sse9I	AATT	2 cut(s)	325, 495
SsiI	CCGC	6 cut(s)	219, 338, 388, 421, 536, 631
SstI	GAGCTC	1 cut(s)	201
TaqI	TCGA	5 cut(s)	32, 186, 301, 543, 653
TasI	AATT	2 cut(s)	325, 495
TauI	GCSGC	2 cut(s)	221, 539
TfiI	GAWTC	2 cut(s)	58, 290
TscAI	CASTG	1 cut(s)	266
TseI	GCWGC	3 cut(s)	255, 370, 596
TspDTI	ATGAA	2 cut(s)	17, 617
TspRI	CASTG	1 cut(s)	266
VneI	GTGCAC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	325, 495
XmiI	GTMKAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.