Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002273

Physical Location & Seq

Genomic Coordinates Forward (+)

10173836 .. 10176102

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG068300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACGATGAACAGCAGTGAGAAAAAGAAGAAGACTCGGGAGTTGCTGAACCTGACGGAGTGCCATTGCTGCCACCTCAGAGTCGACCTCGCCAAATCCTCCAAGAACAACAAGCTTCAGATTCTCTACAGCGAGTGGCGGATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCCACTGAGCTCTGCTCCTACTGCTTCAACGACTCGTCGTTCGGCCACTGCTTCTCTTGCCGCCAGTACAAGCGGCGAGTCCACTGGGATTGCAATTCTGAGTACCGCAGCGCCGCCATCTGGTCCGGGTCGTTGTCTGCTGCAGCCGACCAGGTCTCTATCTGCGCCGATTGCTGGGTGTCGGAGTCGCTGGCCAGGTGGAGGAGAAGTAGAAACATCAGTAGTAGTGTGATAAGTGGTGATAGTATTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.5

Weight (kDa)

8.87

Isoelectric Point (pI)

69.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01062
malus_domestica	MD04G1236600.v1.1 MD12G1255900.v1.1
prunus_persica	Prupe.6G356600_v2.0.a1 Prupe.7G056800_v2.0.a1
pyrus_communis	pycom04g21050 pycom12g23450
rosa_chinensis	RchiOBHm_Chr3g0448591 RchiOBHm_Chr3g0448601
rosa_laevigata	RLG00000008236 RLG00000012909 RLG00000018358 RLG00000023278 RLG00000024391 RLG00000025884 RLG00000025885 RLG00000034435
rosa_multiflora	Rmu_sc0003116.1_g000041 Rmu_sc0003116.1_g000042 Rmu_sc0008764.1_g000006 Rmu_sc0024708.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426870 Rroxscaffold_6G00426890
rosa_rugosa	Rorug02G0613700 Rorug02G0613800 Rorug02G0613900 Rorug02G0614000 Rorug02G0614100
rosa_samantha	Rh1AG022100 Rh1AG314500 Rh1CG294400 Rh3AG013400 Rh3AG013500 Rh3BG013100 Rh3BG013300 Rh3CG012200 Rh3CG012400 Rh3DG013900 Rh3DG014100 Rh4DG068300
rosa_wichuraiana	Rw0G019910 Rw3G000980 Rw3G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	174
AciI	CCGC	6 cut(s)	139, 172, 241, 253, 286, 294
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	2 cut(s)	223, 372
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	248, 284
AfiI	CCNNNNNNNGG	3 cut(s)	300, 354, 381
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	330, 374
AluBI	AGCT	2 cut(s)	115, 190
AluI	AGCT	2 cut(s)	115, 190
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	3 cut(s)	168, 223, 372
ApeKI	GCWGC	4 cut(s)	69, 288, 320, 323
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspLEI	GCGC	2 cut(s)	293, 347
AspS9I	GGNCC	2 cut(s)	169, 303
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	56, 300, 307, 335
BccI	CCATC	1 cut(s)	305
BciT130I	CCWGG	2 cut(s)	332, 376
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	340
BfmI	CTRYAG	2 cut(s)	127, 321
BfoI	RGCGCY	1 cut(s)	294
BisI	GCNGC	7 cut(s)	70, 241, 254, 289, 294, 321, 324
BlsI	GCNGC	7 cut(s)	71, 242, 255, 290, 295, 322, 325
Bme1390I	CCNGG	3 cut(s)	307, 332, 376
Bme18I	GGWCC	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	169, 303
BmrFI	CCNGG	3 cut(s)	307, 332, 376
BmrI	ACTGGG	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	38
BplI	GAGNNNNNCTC	4 cut(s)	72, 104, 179, 211
BpuMI	CCSGG	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	3 cut(s)	300, 354, 381
Bse1I	ACTGG	2 cut(s)	244, 269
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	2 cut(s)	332, 376
BseLI	CCNNNNNNNGG	3 cut(s)	300, 354, 381
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	3 cut(s)	91, 177, 270
BseNI	ACTGG	2 cut(s)	244, 269
BseRI	GAGGAG	2 cut(s)	140, 397
BseXI	GCAGC	4 cut(s)	56, 300, 307, 335
BseYI	CCCAGC	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	170, 225, 374
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	3 cut(s)	300, 354, 381
BsmAI	GTCTC	1 cut(s)	340
BsnI	GGCC	3 cut(s)	170, 225, 374
Bso31I	GGTCTC	1 cut(s)	340
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	6 cut(s)	139, 172, 241, 253, 286, 294
BspANI	GGCC	3 cut(s)	170, 225, 374
BspCNI	CTCAG	3 cut(s)	90, 178, 271
BspFNI	CGCG	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	244, 269
BssMI	GATC	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	332, 376
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	172, 372
BstDEI	CTNAG	3 cut(s)	77, 186, 279
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	2 cut(s)	293, 347
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	6 cut(s)	69, 162, 171, 201, 237, 351
BstNI	CCWGG	2 cut(s)	332, 376
BstSCI	CCNGG	3 cut(s)	305, 330, 374
BstSFI	CTRYAG	2 cut(s)	127, 321
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	4 cut(s)	56, 300, 307, 335
BstV2I	GAAGAC	1 cut(s)	38
BsuRI	GGCC	3 cut(s)	170, 225, 374
BtsI	GCAGTG	2 cut(s)	22, 226
BtsIMutI	CAGTG	4 cut(s)	22, 183, 226, 262
Cac8I	GCNNGC	2 cut(s)	172, 372
CfoI	GCGC	2 cut(s)	293, 347
Cfr13I	GGNCC	2 cut(s)	169, 303
CseI	GACGC	1 cut(s)	163
CsiI	ACCWGGT	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	247, 283
CspCI	CAANNNNNGTGG	2 cut(s)	251, 286
CviJI	RGCY	6 cut(s)	115, 170, 190, 225, 326, 374
CviKI_1	RGCY	6 cut(s)	115, 170, 190, 225, 326, 374
CviQI	GTAC	2 cut(s)	247, 283
DdeI	CTNAG	3 cut(s)	77, 186, 279
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	2 cut(s)	223, 372
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	330, 374
EcoT38I	GRGCYC	1 cut(s)	192
FaiI	YATR	1 cut(s)	433
FauI	CCCGC	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	7 cut(s)	70, 241, 254, 289, 294, 321, 324
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	7 cut(s)	70, 241, 254, 289, 294, 321, 324
GlaI	GCGC	2 cut(s)	292, 346
GluI	GCNGC	7 cut(s)	70, 241, 254, 289, 294, 321, 324
GsaI	CCCAGC	1 cut(s)	358
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	170, 225, 374
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	2 cut(s)	293, 347
Hin6I	GCGC	2 cut(s)	291, 345
HinP1I	GCGC	2 cut(s)	291, 345
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	7 cut(s)	34, 81, 121, 179, 212, 258, 365
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	2 cut(s)	85, 262
Hpy188I	TCNGA	4 cut(s)	80, 120, 280, 364
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	2 cut(s)	85, 262
Hpy99I	CGWCG	2 cut(s)	179, 220
HpyCH4V	TGCA	3 cut(s)	156, 273, 323
HpyF10VI	GCNNNNNNNGC	6 cut(s)	69, 162, 171, 201, 237, 351
HpyF3I	CTNAG	3 cut(s)	77, 186, 279
HspAI	GCGC	2 cut(s)	291, 345
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	4 cut(s)	56, 300, 307, 335
MabI	ACCWGGT	1 cut(s)	330
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	2 cut(s)	40, 43
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	1 cut(s)	274
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	5 cut(s)	28, 90, 206, 267, 374
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	6 cut(s)	86, 98, 109, 158, 161, 375
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	3 cut(s)	307, 332, 376
MvaI	CCWGG	2 cut(s)	332, 376
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	6 cut(s)	69, 162, 171, 201, 237, 351
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	121, 179
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	7 cut(s)	71, 242, 255, 290, 295, 322, 325
PleI	GAGTC	5 cut(s)	28, 89, 206, 266, 373
PpsI	GAGTC	5 cut(s)	28, 89, 206, 266, 373
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	330, 374
PspFI	CCCAGC	1 cut(s)	354
PspGI	CCWGG	2 cut(s)	330, 374
PspPI	GGNCC	2 cut(s)	169, 303
PstI	CTGCAG	1 cut(s)	325
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	2 cut(s)	248, 284
RsaNI	GTAC	2 cut(s)	247, 283
SacI	GAGCTC	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	83
SatI	GCNGC	7 cut(s)	70, 241, 254, 289, 294, 321, 324
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	169, 303
SchI	GAGTC	5 cut(s)	28, 90, 206, 267, 374
ScrFI	CCNGG	3 cut(s)	307, 332, 376
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	7 cut(s)	54, 78, 90, 117, 192, 336, 380
SexAI	ACCWGGT	1 cut(s)	330
SfcI	CTRYAG	2 cut(s)	127, 321
SinI	GGWCC	1 cut(s)	303
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	6 cut(s)	139, 172, 241, 253, 286, 294
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	3 cut(s)	305, 330, 374
TaqI	TCGA	2 cut(s)	84, 177
TasI	AATT	1 cut(s)	274
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	3 cut(s)	243, 256, 296
TfiI	GAWTC	2 cut(s)	121, 179
TscAI	CASTG	4 cut(s)	22, 190, 233, 269
TseI	GCWGC	4 cut(s)	69, 288, 320, 323
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	4 cut(s)	22, 190, 233, 269
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.