Rorug02G0614100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002273
Physical Location & Seq
Forward (+)
73182199 .. 73184095
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0614100.1

Sequence Viewer

Length: 1032 bp
ATGGCTGCACCTCCAAGTGATTCCATACCCTCTGTATATGGGGCTTGGGTCTATTCAGAGTATGGAAAAACTGCAGATGTTCTGAAATTTGATGCAAATGTGGCTGTTCCTGAAATTAAAGAGGACCAGATGCTGATCAAGGTGGTTGCTGCTTCTCTTAACCCAATTGATTCCAGAAGGGCTCTTGGTCTCTACAAGGACATAGAGGGTGATACTACCTTACCAACAGTACCAGGGTATGACGTGGCTGGTGTGGTGGTGAAGGTAGGAAGCCAAGTGCAGAAGTTTAAGGTGCGGGATGAAGTGTATGCTTGTTTGAGTAATAGCATTGAGATTCCCCAATATCATGCTAAGAATAGCCATGGGGATCTCAATGAGAAAGCATTGGTGAAACCAAACAGGCTGGGGTCTTTGGCAGAGTACACGGCTGCAGGAGAAACCATGTTGGCTCTCAAACCCAAAAACCTGAGCTTTATTGAAGCTGCTAGCCTTCCCTTAGCTATTGAGACTGCGTATGGAGCGCTTGAAAGAGCGGAGCTTTCGGCTGGTAAATCCGTCCTTGTTTTGGGAGGCGCTGGGGGTGTTGGAACACATGTGATTCAGCTAGCTAAACATGTTTTTGGGGCATCCAAAGTAGCAGCTACTGCAAGCACTAAAAAACTGGATTTGTTAAGAAGCTTGGGTGCGGATTTGGCTATTGATTACACCAAGGAAAACATCGAAGAGCTGCCAGAGAAATTTGATGTAGTCTATGATGCAGTTGGGCAGACTGACAAGGCAGTGAAGGCGGTGAAGGAAGGTGGGAAGGTAGTGACAATAGTCTTAGGTCCAGTAACTCCTCCGGCGTTCAGATTTGTGCTCACCCCTACAGCGTCTATCTTGGAGAAACTGAAGCCTTACTTGGAGAGCGGGAAGGTGAAGCCAGTGCTTGATCCCACAGGTCCATATCCCTTTTCTAAAGTTGTTGAAGCACTTGGTTACCTTGAGACTTCTAGAGCTACTGGAAAGGTGGTTGTGTACCCTATCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

36.43

Weight (kDa)

6.47

Isoelectric Point (pI)

29.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 41 - 153 2.3e-13 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 167 - 276 1.9e-06 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 194 - 276 3.2e-15 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 227 - 339 2e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 533, 909
AciI CCGC 5 cut(s) 295, 533, 686, 788, 909
AclWI GGATC 2 cut(s) 375, 926
AcsI RAATTY 2 cut(s) 86, 737
AcuI CTGAAG 1 cut(s) 911
AfaI GTAC 3 cut(s) 231, 422, 1019
AfeI AGCGCT 1 cut(s) 522
AfiI CCNNNNNNNGG 1 cut(s) 565
AflIII ACRYGT 2 cut(s) 592, 613
AgsI TTSAA 3 cut(s) 479, 527, 968
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 884, 916
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 3 cut(s) 194, 500, 980
AlwI GGATC 2 cut(s) 375, 926
AlwNI CAGNNNCTG 2 cut(s) 133, 644
Aor51HI AGCGCT 1 cut(s) 522
ApeKI GCWGC 6 cut(s) 5, 149, 428, 482, 638, 727
ApoI RAATTY 2 cut(s) 86, 737
AspLEI GCGC 2 cut(s) 523, 575
AspS9I GGNCC 3 cut(s) 124, 827, 941
AsuHPI GGTGA 6 cut(s) 221, 271, 400, 802, 853, 928
AsuNHI GCTAGC 2 cut(s) 485, 604
AvaII GGWCC 3 cut(s) 124, 827, 941
BanII GRGCYC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 861
BbvI GCAGC 5 cut(s) 136, 415, 469, 650, 714
BceAI ACGGC 1 cut(s) 441
BciT130I CCWGG 1 cut(s) 234
BclI TGATCA 1 cut(s) 135
BcoDI GTCTC 3 cut(s) 194, 500, 980
BfaI CTAG 3 cut(s) 486, 605, 993
BfmI CTRYAG 3 cut(s) 72, 429, 867
BfoI RGCGCY 2 cut(s) 524, 576
BisI GCNGC 6 cut(s) 6, 150, 429, 483, 639, 728
BlsI GCNGC 6 cut(s) 7, 151, 430, 484, 640, 729
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 3 cut(s) 124, 827, 941
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 3 cut(s) 124, 827, 941
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 4 cut(s) 82, 120, 635, 745
BmtI GCTAGC 2 cut(s) 489, 608
BoxI GACNNNNGTC 1 cut(s) 818
Bpu10I CCTNAGC 2 cut(s) 467, 496
BpuEI CTTGAG 1 cut(s) 1004
BsaBI GATNNNNATC 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 233, 361, 708
Bsc4I CCNNNNNNNGG 1 cut(s) 565
Bse1I ACTGG 4 cut(s) 666, 830, 923, 1006
Bse8I GATNNNNATC 1 cut(s) 134
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 233, 361, 708
BseGI GGATG 2 cut(s) 304, 626
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 1 cut(s) 565
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 4 cut(s) 666, 830, 923, 1006
BseRI GAGGAG 1 cut(s) 828
BseXI GCAGC 5 cut(s) 136, 415, 469, 650, 714
BseYI CCCAGC 2 cut(s) 403, 575
BsgI GTGCAG 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 861
BsiSI CCGG 1 cut(s) 842
BslI CCNNNNNNNGG 1 cut(s) 565
BsmAI GTCTC 3 cut(s) 194, 500, 980
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 2 cut(s) 184, 861
Bsp143I GATC 3 cut(s) 135, 367, 931
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 5 cut(s) 295, 533, 686, 788, 909
BspCNI CTCAG 1 cut(s) 459
BspMAI CTGCAG 2 cut(s) 76, 433
BspOI GCTAGC 2 cut(s) 489, 608
BspPI GGATC 2 cut(s) 375, 926
BspQI GCTCTTC 1 cut(s) 717
BspTNI GGTCTC 1 cut(s) 194
BsrBI CCGCTC 2 cut(s) 533, 909
BsrI ACTGG 4 cut(s) 666, 830, 923, 1006
BssECI CCNNGG 3 cut(s) 233, 361, 708
BssMI GATC 3 cut(s) 135, 367, 931
BssT1I CCWWGG 2 cut(s) 361, 708
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 717
BstAPI GCANNNNNTGC 1 cut(s) 644
BstC8I GCNNGC 3 cut(s) 487, 606, 649
BstDEI CTNAG 4 cut(s) 351, 467, 496, 823
BstDSI CCRYGG 1 cut(s) 361
BstEII GGTNACC 1 cut(s) 977
BstF5I GGATG 2 cut(s) 304, 626
BstH2I RGCGCY 2 cut(s) 524, 576
BstHHI GCGC 2 cut(s) 523, 575
BstKTI GATC 3 cut(s) 138, 370, 934
BstMAI GTCTC 3 cut(s) 194, 500, 980
BstMBI GATC 3 cut(s) 135, 367, 931
BstMWI GCNNNNNNNGC 5 cut(s) 101, 518, 644, 692, 785
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 2 cut(s) 596, 617
BstPAI GACNNNNGTC 1 cut(s) 818
BstPI GGTNACC 1 cut(s) 977
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 3 cut(s) 72, 429, 867
BstV1I GCAGC 5 cut(s) 136, 415, 469, 650, 714
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 361
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 2 cut(s) 304, 626
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 2 cut(s) 786, 930
Cac8I GCNNGC 3 cut(s) 487, 606, 649
CaiI CAGNNNCTG 2 cut(s) 133, 644
CfoI GCGC 2 cut(s) 523, 575
Cfr13I GGNCC 3 cut(s) 124, 827, 941
CseI GACGC 1 cut(s) 861
Csp6I GTAC 3 cut(s) 230, 421, 1018
CviAII CATG 6 cut(s) 347, 362, 442, 593, 614, 1029
CviQI GTAC 3 cut(s) 230, 421, 1018
DdeI CTNAG 4 cut(s) 351, 467, 496, 823
DpnI GATC 3 cut(s) 137, 369, 933
DpnII GATC 3 cut(s) 135, 367, 931
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
Eco130I CCWWGG 2 cut(s) 361, 708
Eco24I GRGCYC 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 3 cut(s) 124, 827, 941
Eco47III AGCGCT 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 911
Eco91I GGTNACC 1 cut(s) 977
EcoO65I GGTNACC 1 cut(s) 977
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 361, 708
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 2 cut(s) 361, 708
FaeI CATG 6 cut(s) 350, 365, 445, 596, 617, 1032
FalI AAGNNNNNCTT 2 cut(s) 884, 916
FatI CATG 6 cut(s) 346, 361, 441, 592, 613, 1028
FauI CCCGC 2 cut(s) 288, 902
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 6 cut(s) 6, 150, 429, 483, 639, 728
FokI GGATG 2 cut(s) 311, 613
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 6 cut(s) 6, 150, 429, 483, 639, 728
FspBI CTAG 3 cut(s) 486, 605, 993
GlaI GCGC 2 cut(s) 522, 574
GluI GCNGC 6 cut(s) 6, 150, 429, 483, 639, 728
GsaI CCCAGC 2 cut(s) 407, 579
HaeII RGCGCY 2 cut(s) 524, 576
HapII CCGG 1 cut(s) 842
HgaI GACGC 1 cut(s) 861
HhaI GCGC 2 cut(s) 523, 575
Hin1II CATG 6 cut(s) 350, 365, 445, 596, 617, 1032
Hin6I GCGC 2 cut(s) 521, 573
HinP1I GCGC 2 cut(s) 521, 573
HindIII AAGCTT 1 cut(s) 676
HinfI GANTC 4 cut(s) 20, 170, 334, 598
HpaII CCGG 1 cut(s) 842
HphI GGTGA 6 cut(s) 221, 271, 400, 802, 853, 928
Hpy166II GTNNAC 2 cut(s) 423, 1018
Hpy188I TCNGA 3 cut(s) 58, 84, 851
Hpy188III TCNNGA 3 cut(s) 110, 174, 993
Hpy8I GTNNAC 2 cut(s) 423, 1018
HpyAV CCTTC 8 cut(s) 171, 256, 500, 778, 787, 791, 799, 907
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 7 cut(s) 8, 74, 95, 280, 431, 647, 758
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 518, 644, 692, 785
HpyF3I CTNAG 4 cut(s) 351, 467, 496, 823
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 6 cut(s) 350, 365, 445, 596, 617, 1032
HspAI GCGC 2 cut(s) 521, 573
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 3 cut(s) 135, 367, 931
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 2 cut(s) 518, 535
Lsp1109I GCAGC 5 cut(s) 136, 415, 469, 650, 714
LweI GCATC 4 cut(s) 82, 120, 635, 745
MaeI CTAG 3 cut(s) 486, 605, 993
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 3 cut(s) 811, 832, 977
MalI GATC 3 cut(s) 137, 369, 933
MbiI CCGCTC 2 cut(s) 533, 909
MboI GATC 3 cut(s) 135, 367, 931
MboII GAAGA 1 cut(s) 734
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 184, 861
MluCI AATT 4 cut(s) 86, 114, 165, 737
MmeI TCCRAC 1 cut(s) 565
MnlI CCTC 6 cut(s) 21, 40, 115, 199, 563, 849
MseI TTAA 4 cut(s) 117, 159, 288, 671
MspI CCGG 1 cut(s) 842
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 5 cut(s) 101, 518, 644, 692, 785
NcoI CCATGG 1 cut(s) 361
NdeII GATC 3 cut(s) 135, 367, 931
NheI GCTAGC 2 cut(s) 485, 604
NlaIII CATG 6 cut(s) 350, 365, 445, 596, 617, 1032
NmuCI GTSAC 1 cut(s) 811
NspI RCATGY 2 cut(s) 596, 617
PciI ACATGT 2 cut(s) 592, 613
PciSI GCTCTTC 1 cut(s) 717
PfeI GAWTC 4 cut(s) 20, 170, 334, 598
PkrI GCNGC 6 cut(s) 7, 151, 430, 484, 640, 729
PscI ACATGT 2 cut(s) 592, 613
PshAI GACNNNNGTC 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 232
PspEI GGTNACC 1 cut(s) 977
PspFI CCCAGC 2 cut(s) 403, 575
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 3 cut(s) 124, 827, 941
PstI CTGCAG 2 cut(s) 76, 433
PstNI CAGNNNCTG 2 cut(s) 133, 644
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 3 cut(s) 231, 422, 1019
RsaNI GTAC 3 cut(s) 230, 421, 1018
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 4 cut(s) 117, 159, 288, 671
SatI GCNGC 6 cut(s) 6, 150, 429, 483, 639, 728
Sau3AI GATC 3 cut(s) 135, 367, 931
Sau96I GGNCC 3 cut(s) 124, 827, 941
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 2 cut(s) 184, 861
SfaNI GCATC 4 cut(s) 82, 120, 635, 745
SfcI CTRYAG 3 cut(s) 72, 429, 867
SinI GGWCC 3 cut(s) 124, 827, 941
SmlI CTYRAG 1 cut(s) 983
SmoI CTYRAG 1 cut(s) 983
Sse9I AATT 4 cut(s) 86, 114, 165, 737
SsiI CCGC 5 cut(s) 295, 533, 686, 788, 909
SspMI CTAG 3 cut(s) 486, 605, 993
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 2 cut(s) 361, 708
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 720
TasI AATT 4 cut(s) 86, 114, 165, 737
TatI WGTACW 1 cut(s) 420
TfiI GAWTC 4 cut(s) 20, 170, 334, 598
Tru1I TTAA 4 cut(s) 117, 159, 288, 671
Tru9I TTAA 4 cut(s) 117, 159, 288, 671
TscAI CASTG 2 cut(s) 786, 930
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 6 cut(s) 5, 149, 428, 482, 638, 727
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 2 cut(s) 786, 930
VpaK11BI GGWCC 3 cut(s) 124, 827, 941
XapI RAATTY 2 cut(s) 86, 737
XbaI TCTAGA 1 cut(s) 992
XceI RCATGY 2 cut(s) 596, 617
XspI CTAG 3 cut(s) 486, 605, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.